RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 N4BP3O15049 544 aa12.81□□□□□ -0.36
CLN3-257ENST00000637110 HIP1RO75146 1068 aa12.81□□□□□ -0.36
CLN3-257ENST00000637110 NR1I2O75469 434 aa12.81□□□□□ -0.36
CLN3-257ENST00000637110 CXCL14O95715 111 aa12.81□□□□□ -0.36
CLN3-257ENST00000637110 BMP15O95972 392 aa12.81□□□□□ -0.36
CLN3-257ENST00000637110 GALTP07902 379 aa12.81□□□□□ -0.36
CLN3-257ENST00000637110 AOC1P19801 751 aa12.81□□□□□ -0.36
CLN3-257ENST00000637110 UBA7P41226 1012 aa12.81□□□□□ -0.36
CLN3-257ENST00000637110 OR1G1P47890 313 aa12.81□□□□□ -0.36
CLN3-257ENST00000637110 SLC11A1P49279 550 aa12.81□□□□□ -0.36
CLN3-257ENST00000637110 AFF1P51825 1210 aaKnown RBP12.81□□□□□ -0.36
CLN3-257ENST00000637110 EFNA5P52803 228 aa12.81□□□□□ -0.36
CLN3-257ENST00000637110 PEX3P56589 373 aa12.81□□□□□ -0.36
CLN3-257ENST00000637110 KCNC3Q14003 757 aa12.81□□□□□ -0.36
CLN3-257ENST00000637110 SMC1AQ14683 1233 aaKnown RBP12.81□□□□□ -0.36
CLN3-257ENST00000637110 SF3A1Q15459 793 aaKnown RBP12.81□□□□□ -0.36
CLN3-257ENST00000637110 CDCA2Q69YH5 1023 aaPredicted RBP12.81□□□□□ -0.36
CLN3-257ENST00000637110 PPP4R3CPQ6ZMV5 832 aa12.81□□□□□ -0.36
CLN3-257ENST00000637110 CABP7Q86V35 215 aa12.81□□□□□ -0.36
CLN3-257ENST00000637110 VPS52Q8N1B4 723 aa12.81□□□□□ -0.36
CLN3-257ENST00000637110 PLCD3Q8N3E9 789 aa12.81□□□□□ -0.36
CLN3-257ENST00000637110 CALML4Q96GE6 196 aa12.81□□□□□ -0.36
CLN3-257ENST00000637110 DRC1Q96MC2 740 aa12.81□□□□□ -0.36
CLN3-257ENST00000637110 RPS6KC1Q96S38 1066 aa12.81□□□□□ -0.36
CLN3-257ENST00000637110 MMTAG2Q9BU76 263 aaKnown RBP12.81□□□□□ -0.36
CLN3-257ENST00000637110 FZD8Q9H461 694 aa12.81□□□□□ -0.36
CLN3-257ENST00000637110 NXF3Q9H4D5 531 aaKnown RBP12.81□□□□□ -0.36
CLN3-257ENST00000637110 KLK14Q9P0G3 267 aa12.81□□□□□ -0.36
CLN3-257ENST00000637110 USP20Q9Y2K6 914 aa12.81□□□□□ -0.36
CLN3-257ENST00000637110 ARL5CA6NH57 179 aa12.8□□□□□ -0.36
CLN3-257ENST00000637110 HIDE1A8MVS5 230 aa12.8□□□□□ -0.36
CLN3-257ENST00000637110 K7ERI5 159 aa12.8□□□□□ -0.36
CLN3-257ENST00000637110 ACKR2O00590 384 aa12.8□□□□□ -0.36
CLN3-257ENST00000637110 DDHD2O94830 711 aa12.8□□□□□ -0.36
CLN3-257ENST00000637110 SYT1P21579 422 aa12.8□□□□□ -0.36
CLN3-257ENST00000637110 MTHFRP42898 656 aa12.8□□□□□ -0.36
CLN3-257ENST00000637110 SCNN1GP51170 649 aa12.8□□□□□ -0.36
CLN3-257ENST00000637110 CEBPZQ03701 1054 aaKnown RBP12.8□□□□□ -0.36
CLN3-257ENST00000637110 RAD51AP2Q09MP3 1159 aa12.8□□□□□ -0.36
CLN3-257ENST00000637110 DMP1Q13316 513 aaPredicted RBP12.8□□□□□ -0.36
CLN3-257ENST00000637110 DHX8Q14562 1220 aaKnown RBP12.8□□□□□ -0.36
CLN3-257ENST00000637110 RINT1Q6NUQ1 792 aa12.8□□□□□ -0.36
CLN3-257ENST00000637110 ZC3H14Q6PJT7 736 aaKnown RBP12.8□□□□□ -0.36
CLN3-257ENST00000637110 KCNK18Q7Z418 384 aa12.8□□□□□ -0.36
CLN3-257ENST00000637110 APBB1IPQ7Z5R6 666 aaPredicted RBP12.8□□□□□ -0.36
CLN3-257ENST00000637110 HSCBQ8IWL3 235 aa12.8□□□□□ -0.36
CLN3-257ENST00000637110 ZDHHC14Q8IZN3 488 aa12.8□□□□□ -0.36
CLN3-257ENST00000637110 DTWD2Q8NBA8 298 aa12.8□□□□□ -0.36
CLN3-257ENST00000637110 INTS4Q96HW7 963 aaKnown RBP12.8□□□□□ -0.36
CLN3-257ENST00000637110 IGSF21Q96ID5 467 aa12.8□□□□□ -0.36
CLN3-257ENST00000637110 ZFP42Q96MM3 310 aa12.8□□□□□ -0.36
CLN3-257ENST00000637110 PNMA5Q96PV4 448 aa12.8□□□□□ -0.36
CLN3-257ENST00000637110 TMEM175Q9BSA9 504 aa12.8□□□□□ -0.36
CLN3-257ENST00000637110 RUSC1Q9BVN2 902 aa12.8□□□□□ -0.36
CLN3-257ENST00000637110 ADAM7Q9H2U9 754 aa12.8□□□□□ -0.36
CLN3-257ENST00000637110 POMKQ9H5K3 350 aa12.8□□□□□ -0.36
CLN3-257ENST00000637110 KMT5AQ9NQR1 393 aa12.8□□□□□ -0.36
CLN3-257ENST00000637110 DLL3Q9NYJ7 618 aa12.8□□□□□ -0.36
CLN3-257ENST00000637110 GIT1Q9Y2X7 761 aa12.8□□□□□ -0.36
CLN3-257ENST00000637110 PRG3Q9Y2Y8 225 aaPredicted RBP12.8□□□□□ -0.36
CLN3-257ENST00000637110 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP12.79□□□□□ -0.36
CLN3-257ENST00000637110 SFI1A8K8P3 1242 aa12.79□□□□□ -0.36
CLN3-257ENST00000637110 NRP1O14786 923 aa12.79□□□□□ -0.36
CLN3-257ENST00000637110 PLA2G4BP0C869 781 aa12.79□□□□□ -0.36
CLN3-257ENST00000637110 FAM187BQ17R55 369 aa12.79□□□□□ -0.36
CLN3-257ENST00000637110 CWF19L1Q69YN2 538 aaKnown RBP12.79□□□□□ -0.36
CLN3-257ENST00000637110 DDX53Q86TM3 631 aaKnown RBP12.79□□□□□ -0.36
CLN3-257ENST00000637110 TMEM173Q86WV6 379 aaPredicted RBP12.79□□□□□ -0.36
CLN3-257ENST00000637110 MRPL43Q8N983 215 aaKnown RBP12.79□□□□□ -0.36
CLN3-257ENST00000637110 AUTS2Q8WXX7 1259 aa12.79□□□□□ -0.36
CLN3-257ENST00000637110 AK8Q96MA6 479 aa12.79□□□□□ -0.36
CLN3-257ENST00000637110 SMOC2Q9H3U7 446 aa12.79□□□□□ -0.36
CLN3-257ENST00000637110 PDZD7Q9H5P4 517 aa12.79□□□□□ -0.36
CLN3-257ENST00000637110 C2orf71A6NGG8 1288 aa12.78□□□□□ -0.36
CLN3-257ENST00000637110 SPDYE4A6NLX3 237 aa12.78□□□□□ -0.36
CLN3-257ENST00000637110 TTLL13PA6NNM8 815 aa12.78□□□□□ -0.36
CLN3-257ENST00000637110 KRT18P05783 430 aaKnown RBP12.78□□□□□ -0.36
CLN3-257ENST00000637110 ASGR2P07307 311 aa12.78□□□□□ -0.36
CLN3-257ENST00000637110 SDHBP21912 280 aa12.78□□□□□ -0.36
CLN3-257ENST00000637110 LONP1P36776 959 aaKnown RBP12.78□□□□□ -0.36
CLN3-257ENST00000637110 NPTX2P47972 431 aa12.78□□□□□ -0.36
CLN3-257ENST00000637110 SMTNP53814 917 aa12.78□□□□□ -0.36
CLN3-257ENST00000637110 CACNB1Q02641 598 aaPredicted RBP12.78□□□□□ -0.36
CLN3-257ENST00000637110 GIT2Q14161 759 aa12.78□□□□□ -0.36
CLN3-257ENST00000637110 ATF7IP2Q5U623 682 aa12.78□□□□□ -0.36
CLN3-257ENST00000637110 FAM173BQ6P4H8 233 aa12.78□□□□□ -0.36
CLN3-257ENST00000637110 C1orf186Q6ZWK4 172 aa12.78□□□□□ -0.36
CLN3-257ENST00000637110 KCTD17Q8N5Z5 321 aa12.78□□□□□ -0.36
CLN3-257ENST00000637110 SYT2Q8N9I0 419 aaPredicted RBP12.78□□□□□ -0.36
CLN3-257ENST00000637110 BCL7CQ8WUZ0 217 aaPredicted RBP12.78□□□□□ -0.36
CLN3-257ENST00000637110 RUBCNQ92622 972 aa12.78□□□□□ -0.36
CLN3-257ENST00000637110 TCHPQ9BT92 498 aa12.78□□□□□ -0.36
CLN3-257ENST00000637110 TIPINQ9BVW5 301 aa12.78□□□□□ -0.36
CLN3-257ENST00000637110 COLEC11Q9BWP8 271 aa12.78□□□□□ -0.36
CLN3-257ENST00000637110 CCDC113Q9H0I3 377 aa12.78□□□□□ -0.36
CLN3-257ENST00000637110 MIOSQ9NXC5 875 aa12.78□□□□□ -0.36
CLN3-257ENST00000637110 SNTG2Q9NY99 539 aa12.78□□□□□ -0.36
CLN3-257ENST00000637110 LIMD1Q9UGP4 676 aa12.78□□□□□ -0.36
CLN3-257ENST00000637110 KCNG1Q9UIX4 513 aa12.78□□□□□ -0.36
CLN3-257ENST00000637110 FBXL21Q9UKT6 434 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms