RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 FTLP02792 175 aaPredicted RBP16.87■□□□□ 0.29
CLN3-251ENST00000636853 MYBL2P10244 700 aa16.87■□□□□ 0.29
CLN3-251ENST00000636853 TNNI1P19237 187 aa16.87■□□□□ 0.29
CLN3-251ENST00000636853 MCM3P25205 808 aa16.87■□□□□ 0.29
CLN3-251ENST00000636853 GPR162Q16538 588 aa16.87■□□□□ 0.29
CLN3-251ENST00000636853 MAP1SQ66K74 1059 aaPredicted RBP16.87■□□□□ 0.29
CLN3-251ENST00000636853 LRRC71Q8N4P6 559 aa16.87■□□□□ 0.29
CLN3-251ENST00000636853 FNBP1Q96RU3 617 aa16.87■□□□□ 0.29
CLN3-251ENST00000636853 KIAA1586Q9HCI6 787 aa16.87■□□□□ 0.29
CLN3-251ENST00000636853 NOCTQ9UK39 431 aaKnown RBP16.87■□□□□ 0.29
CLN3-251ENST00000636853 ANKRD62A6NC57 917 aa16.86■□□□□ 0.29
CLN3-251ENST00000636853 TTLL13PA6NNM8 815 aa16.86■□□□□ 0.29
CLN3-251ENST00000636853 PIGRP01833 764 aa16.86■□□□□ 0.29
CLN3-251ENST00000636853 HARSP12081 509 aaKnown RBP16.86■□□□□ 0.29
CLN3-251ENST00000636853 PTPRJQ12913 1337 aa16.86■□□□□ 0.29
CLN3-251ENST00000636853 SMC1AQ14683 1233 aaKnown RBP16.86■□□□□ 0.29
CLN3-251ENST00000636853 PSMD6Q15008 389 aa16.86■□□□□ 0.29
CLN3-251ENST00000636853 SEZ6Q53EL9 994 aa16.86■□□□□ 0.29
CLN3-251ENST00000636853 CCDC62Q6P9F0 684 aa16.86■□□□□ 0.29
CLN3-251ENST00000636853 KCNV1Q6PIU1 500 aa16.86■□□□□ 0.29
CLN3-251ENST00000636853 MSTO1Q9BUK6 570 aa16.86■□□□□ 0.29
CLN3-251ENST00000636853 TSPYL1Q9H0U9 437 aa16.86■□□□□ 0.29
CLN3-251ENST00000636853 STXBP5LQ9Y2K9 1186 aa16.86■□□□□ 0.29
CLN3-251ENST00000636853 A0A0U1RQG5 324 aaPredicted RBP16.86■□□□□ 0.29
CLN3-251ENST00000636853 ZBTB42B2RXF5 422 aa16.86■□□□□ 0.29
CLN3-251ENST00000636853 TULP2O00295 520 aa16.86■□□□□ 0.29
CLN3-251ENST00000636853 ADCY3O60266 1144 aa16.86■□□□□ 0.29
CLN3-251ENST00000636853 LGR5O75473 907 aa16.86■□□□□ 0.29
CLN3-251ENST00000636853 MMEP08473 750 aa16.86■□□□□ 0.29
CLN3-251ENST00000636853 TXNP10599 105 aaKnown RBP16.86■□□□□ 0.29
CLN3-251ENST00000636853 MKRN4PQ13434 485 aaPredicted RBP16.86■□□□□ 0.29
CLN3-251ENST00000636853 CASP8Q14790 479 aa16.86■□□□□ 0.29
CLN3-251ENST00000636853 C15orf39Q6ZRI6 1047 aa16.86■□□□□ 0.29
CLN3-251ENST00000636853 NT5DC3Q86UY8 548 aa16.86■□□□□ 0.29
CLN3-251ENST00000636853 METTL13Q8N6R0 699 aa16.86■□□□□ 0.29
CLN3-251ENST00000636853 BBXQ8WY36 941 aaPredicted RBP16.86■□□□□ 0.29
CLN3-251ENST00000636853 KCNN1Q92952 543 aa16.86■□□□□ 0.29
CLN3-251ENST00000636853 FAM167AQ96KS9 214 aa16.86■□□□□ 0.29
CLN3-251ENST00000636853 TMEM134Q9H6X4 195 aa16.86■□□□□ 0.29
CLN3-251ENST00000636853 COG5Q9UP83 839 aa16.86■□□□□ 0.29
CLN3-251ENST00000636853 IQCA1LA6NCM1 817 aa16.85■□□□□ 0.29
CLN3-251ENST00000636853 CALCAP01258 141 aa16.85■□□□□ 0.29
CLN3-251ENST00000636853 SRGAP2CP0DJJ0 459 aa16.85■□□□□ 0.29
CLN3-251ENST00000636853 SLFN12LQ6IEE8 588 aa16.85■□□□□ 0.29
CLN3-251ENST00000636853 CCNI2Q6ZMN8 369 aaPredicted RBP16.85■□□□□ 0.29
CLN3-251ENST00000636853 SYCE1Q8N0S2 351 aa16.85■□□□□ 0.29
CLN3-251ENST00000636853 TRAPPC12Q8WVT3 735 aa16.85■□□□□ 0.29
CLN3-251ENST00000636853 GDAP1L1Q96MZ0 367 aa16.85■□□□□ 0.29
CLN3-251ENST00000636853 ISCUQ9H1K1 167 aa16.85■□□□□ 0.29
CLN3-251ENST00000636853 RBAKQ9NYW8 714 aaPredicted RBP16.85■□□□□ 0.29
CLN3-251ENST00000636853 CHORDC1Q9UHD1 332 aaPredicted RBP16.85■□□□□ 0.29
CLN3-251ENST00000636853 SCN4AP35499 1836 aa16.85■□□□□ 0.29
CLN3-251ENST00000636853 A0A0B4J269 797 aa16.85■□□□□ 0.29
CLN3-251ENST00000636853 CEP104O60308 925 aa16.85■□□□□ 0.29
CLN3-251ENST00000636853 ZBTB48P10074 688 aaPredicted RBP16.85■□□□□ 0.29
CLN3-251ENST00000636853 CYP11B1P15538 503 aa16.85■□□□□ 0.29
CLN3-251ENST00000636853 CLDN10P78369 228 aa16.85■□□□□ 0.29
CLN3-251ENST00000636853 PLCB4Q15147 1175 aa16.85■□□□□ 0.29
CLN3-251ENST00000636853 TDRD10Q5VZ19 366 aaKnown RBP16.85■□□□□ 0.29
CLN3-251ENST00000636853 C8orf74Q6P047 294 aa16.85■□□□□ 0.29
CLN3-251ENST00000636853 ATP8B4Q8TF62 1192 aa16.85■□□□□ 0.29
CLN3-251ENST00000636853 ZBTB10Q96DT7 871 aa16.85■□□□□ 0.29
CLN3-251ENST00000636853 UBXN6Q9BZV1 441 aa16.85■□□□□ 0.29
CLN3-251ENST00000636853 PLEKHA4Q9H4M7 779 aa16.85■□□□□ 0.29
CLN3-251ENST00000636853 SUCLA2Q9P2R7 463 aaPredicted RBP16.85■□□□□ 0.29
CLN3-251ENST00000636853 C4BPAP04003 597 aaKnown RBP16.84■□□□□ 0.29
CLN3-251ENST00000636853 KRT5P13647 590 aa16.84■□□□□ 0.29
CLN3-251ENST00000636853 FMO1Q01740 532 aa16.84■□□□□ 0.29
CLN3-251ENST00000636853 ENPEPQ07075 957 aa16.84■□□□□ 0.29
CLN3-251ENST00000636853 BIRC3Q13489 604 aa16.84■□□□□ 0.29
CLN3-251ENST00000636853 ZACNQ401N2 412 aa16.84■□□□□ 0.29
CLN3-251ENST00000636853 GJC2Q5T442 439 aaPredicted RBP16.84■□□□□ 0.29
CLN3-251ENST00000636853 USP38Q8NB14 1042 aa16.84■□□□□ 0.29
CLN3-251ENST00000636853 MORC4Q8TE76 937 aa16.84■□□□□ 0.29
CLN3-251ENST00000636853 ZNF668Q96K58 619 aaPredicted RBP16.84■□□□□ 0.29
CLN3-251ENST00000636853 PBKQ96KB5 322 aa16.84■□□□□ 0.29
CLN3-251ENST00000636853 AMFRQ9UKV5 643 aa16.84■□□□□ 0.29
CLN3-251ENST00000636853 PNMA3Q9UL41 463 aa16.84■□□□□ 0.29
CLN3-251ENST00000636853 ADGRA2Q96PE1 1338 aa16.84■□□□□ 0.29
CLN3-251ENST00000636853 PDHXO00330 501 aa16.84■□□□□ 0.29
CLN3-251ENST00000636853 CES2O00748 559 aa16.84■□□□□ 0.29
CLN3-251ENST00000636853 KIAA0391O15091 583 aaKnown RBP16.84■□□□□ 0.29
CLN3-251ENST00000636853 RTN2O75298 545 aa16.84■□□□□ 0.29
CLN3-251ENST00000636853 HLA-DRAP01903 254 aa16.84■□□□□ 0.29
CLN3-251ENST00000636853 GJB1P08034 283 aa16.84■□□□□ 0.29
CLN3-251ENST00000636853 SCP2P22307 547 aa16.84■□□□□ 0.29
CLN3-251ENST00000636853 TNNT3P45378 269 aaPredicted RBP16.84■□□□□ 0.29
CLN3-251ENST00000636853 LAMTOR4Q0VGL1 99 aa16.84■□□□□ 0.29
CLN3-251ENST00000636853 MAP9Q49MG5 647 aa16.84■□□□□ 0.29
CLN3-251ENST00000636853 IER5Q5VY09 327 aa16.84■□□□□ 0.29
CLN3-251ENST00000636853 SPOPLQ6IQ16 392 aa16.84■□□□□ 0.29
CLN3-251ENST00000636853 ARMCX2Q7L311 632 aa16.84■□□□□ 0.29
CLN3-251ENST00000636853 PLPPR4Q7Z2D5 763 aa16.84■□□□□ 0.29
CLN3-251ENST00000636853 ZBTB33Q86T24 672 aa16.84■□□□□ 0.29
CLN3-251ENST00000636853 PNMA8AQ86V59 439 aaPredicted RBP16.84■□□□□ 0.29
CLN3-251ENST00000636853 RNF149Q8NC42 400 aa16.84■□□□□ 0.29
CLN3-251ENST00000636853 SHCBP1Q8NEM2 672 aa16.84■□□□□ 0.29
CLN3-251ENST00000636853 GPRC5AQ8NFJ5 357 aa16.84■□□□□ 0.29
CLN3-251ENST00000636853 KRT12Q99456 494 aa16.84■□□□□ 0.29
CLN3-251ENST00000636853 C1orf112Q9NSG2 853 aa16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms