RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 EIF1ADQ8N9N8 165 aaKnown RBP9.41□□□□□ -0.9
VCL-206ENST00000623461 KCNB2Q92953 911 aa9.41□□□□□ -0.9
VCL-206ENST00000623461 ADPGKQ9BRR6 497 aa9.41□□□□□ -0.9
VCL-206ENST00000623461 POLD4Q9HCU8 107 aa9.41□□□□□ -0.9
VCL-206ENST00000623461 NEU2Q9Y3R4 380 aa9.41□□□□□ -0.9
VCL-206ENST00000623461 RNF17Q9BXT8 1623 aaKnown RBP9.41□□□□□ -0.9
VCL-206ENST00000623461 PDXKO00764 312 aa9.41□□□□□ -0.9
VCL-206ENST00000623461 MAGEA4P43358 317 aa9.41□□□□□ -0.9
VCL-206ENST00000623461 SLC34A1Q06495 639 aa9.41□□□□□ -0.9
VCL-206ENST00000623461 SLFN12LQ6IEE8 588 aa9.41□□□□□ -0.9
VCL-206ENST00000623461 EXOC8Q8IYI6 725 aa9.41□□□□□ -0.9
VCL-206ENST00000623461 XXYLT1Q8NBI6 393 aa9.41□□□□□ -0.9
VCL-206ENST00000623461 SMARCAL1Q9NZC9 954 aa9.41□□□□□ -0.9
VCL-206ENST00000623461 CCPG1Q9ULG6 757 aa9.41□□□□□ -0.9
VCL-206ENST00000623461 ABCB11O95342 1321 aa9.41□□□□□ -0.9
VCL-206ENST00000623461 CES2O00748 559 aa9.41□□□□□ -0.9
VCL-206ENST00000623461 TBC1D4O60343 1298 aa9.41□□□□□ -0.9
VCL-206ENST00000623461 CERKLQ49MI3 558 aaPredicted RBP9.41□□□□□ -0.9
VCL-206ENST00000623461 NLRP9Q7RTR0 991 aa9.41□□□□□ -0.9
VCL-206ENST00000623461 TMC4Q7Z404 712 aa9.41□□□□□ -0.9
VCL-206ENST00000623461 CENPTQ96BT3 561 aa9.41□□□□□ -0.9
VCL-206ENST00000623461 TRIM9Q9C026 710 aa9.41□□□□□ -0.9
VCL-206ENST00000623461 CNGB3Q9NQW8 809 aa9.41□□□□□ -0.9
VCL-206ENST00000623461 VAMP7P51809 220 aa9.41□□□□□ -0.9
VCL-206ENST00000623461 YWHAHQ04917 246 aaPredicted RBP9.41□□□□□ -0.9
VCL-206ENST00000623461 TRMT5Q32P41 509 aaKnown RBP9.41□□□□□ -0.9
VCL-206ENST00000623461 RNF25Q96BH1 459 aaPredicted RBP9.41□□□□□ -0.9
VCL-206ENST00000623461 FAM8A1Q9UBU6 413 aa9.41□□□□□ -0.9
VCL-206ENST00000623461 MCM8Q9UJA3 840 aa9.41□□□□□ -0.9
VCL-206ENST00000623461 TESPA1A2RU30 521 aaPredicted RBP9.41□□□□□ -0.9
VCL-206ENST00000623461 ZNF839A8K0R7 811 aa9.41□□□□□ -0.9
VCL-206ENST00000623461 POTECB2RU33 542 aa9.41□□□□□ -0.9
VCL-206ENST00000623461 H7C1W4 665 aa9.41□□□□□ -0.9
VCL-206ENST00000623461 ZCCHC18P0CG32 403 aa9.41□□□□□ -0.9
VCL-206ENST00000623461 TFDP1Q14186 410 aa9.41□□□□□ -0.9
VCL-206ENST00000623461 CDR2LQ86X02 465 aaPredicted RBP9.41□□□□□ -0.9
VCL-206ENST00000623461 NOD1Q9Y239 953 aa9.41□□□□□ -0.9
VCL-206ENST00000623461 NCAPD2Q15021 1401 aa9.41□□□□□ -0.9
VCL-206ENST00000623461 RARGP13631 454 aa9.4□□□□□ -0.9
VCL-206ENST00000623461 DAB2P98082 770 aa9.4□□□□□ -0.9
VCL-206ENST00000623461 MDH1BQ5I0G3 518 aa9.4□□□□□ -0.9
VCL-206ENST00000623461 STOX1Q6ZVD7 989 aa9.4□□□□□ -0.9
VCL-206ENST00000623461 DDX42Q86XP3 938 aaKnown RBP eCLIP9.4□□□□□ -0.91e-10■■□□□ 12.4
VCL-206ENST00000623461 RHPN2Q8IUC4 686 aa9.4□□□□□ -0.9
VCL-206ENST00000623461 BBS5Q8N3I7 341 aa9.4□□□□□ -0.9
VCL-206ENST00000623461 MAGEC3Q8TD91 643 aa9.4□□□□□ -0.9
VCL-206ENST00000623461 COA7Q96BR5 231 aa9.4□□□□□ -0.9
VCL-206ENST00000623461 ZNF212Q9UDV6 495 aa9.4□□□□□ -0.9
VCL-206ENST00000623461 PLAGL2Q9UPG8 496 aa9.4□□□□□ -0.9
VCL-206ENST00000623461 M0R3G1 203 aa9.4□□□□□ -0.9
VCL-206ENST00000623461 ABLIM1O14639 778 aa9.4□□□□□ -0.9
VCL-206ENST00000623461 SEC24DO94855 1032 aaPredicted RBP9.4□□□□□ -0.9
VCL-206ENST00000623461 TBXAS1P24557 533 aaPredicted RBP9.4□□□□□ -0.9
VCL-206ENST00000623461 TNFRSF8P28908 595 aa9.4□□□□□ -0.9
VCL-206ENST00000623461 COPAP53621 1224 aa9.4□□□□□ -0.9
VCL-206ENST00000623461 DYNLL1P63167 89 aaKnown RBP9.4□□□□□ -0.9
VCL-206ENST00000623461 OR6B2Q6IFH4 312 aa9.4□□□□□ -0.9
VCL-206ENST00000623461 PRUNE1Q86TP1 453 aa9.4□□□□□ -0.9
VCL-206ENST00000623461 CDKL3Q8IVW4 592 aaPredicted RBP9.4□□□□□ -0.9
VCL-206ENST00000623461 FAM81AQ8TBF8 368 aa9.4□□□□□ -0.9
VCL-206ENST00000623461 STK32AQ8WU08 396 aa9.4□□□□□ -0.9
VCL-206ENST00000623461 NCLNQ969V3 563 aa9.4□□□□□ -0.9
VCL-206ENST00000623461 PRPF18Q99633 342 aaKnown RBP9.4□□□□□ -0.9
VCL-206ENST00000623461 FCER1AP12319 257 aa9.4□□□□□ -0.9
VCL-206ENST00000623461 OSBPP22059 807 aa9.4□□□□□ -0.9
VCL-206ENST00000623461 HMOX2P30519 316 aa9.4□□□□□ -0.9
VCL-206ENST00000623461 ABCE1P61221 599 aaKnown RBP9.4□□□□□ -0.9
VCL-206ENST00000623461 ZNF200P98182 395 aaPredicted RBP9.4□□□□□ -0.9
VCL-206ENST00000623461 PDIA5Q14554 519 aa9.4□□□□□ -0.9
VCL-206ENST00000623461 P3H1Q32P28 736 aa9.4□□□□□ -0.9
VCL-206ENST00000623461 MTHFD1LQ6UB35 978 aa9.4□□□□□ -0.9
VCL-206ENST00000623461 NLRP10Q86W26 655 aa9.4□□□□□ -0.9
VCL-206ENST00000623461 MPP4Q96JB8 637 aa9.4□□□□□ -0.9
VCL-206ENST00000623461 BHMT2Q9H2M3 363 aa9.4□□□□□ -0.9
VCL-206ENST00000623461 PARVAQ9NVD7 372 aa9.4□□□□□ -0.9
VCL-206ENST00000623461 PSMC3P17980 439 aa9.4□□□□□ -0.9
VCL-206ENST00000623461 COILP38432 576 aaPredicted RBP9.4□□□□□ -0.9
VCL-206ENST00000623461 NPEPPSP55786 919 aa9.4□□□□□ -0.9
VCL-206ENST00000623461 TTC39BQ5VTQ0 682 aaPredicted RBP9.4□□□□□ -0.9
VCL-206ENST00000623461 CD302Q8IX05 232 aa9.4□□□□□ -0.9
VCL-206ENST00000623461 PSPC1Q8WXF1 523 aaKnown RBP9.4□□□□□ -0.9
VCL-206ENST00000623461 PHF20Q9BVI0 1012 aa9.4□□□□□ -0.9
VCL-206ENST00000623461 ADNPQ9H2P0 1102 aa9.4□□□□□ -0.9
VCL-206ENST00000623461 A1CFQ9NQ94 594 aaKnown RBP9.4□□□□□ -0.9
VCL-206ENST00000623461 TSPOAP1O95153 1857 aa9.4□□□□□ -0.9
VCL-206ENST00000623461 TLR3O15455 904 aaKnown RBP9.4□□□□□ -0.91
VCL-206ENST00000623461 AKAP10O43572 662 aa9.4□□□□□ -0.91
VCL-206ENST00000623461 TRAPPC3O43617 180 aa9.4□□□□□ -0.91
VCL-206ENST00000623461 PMS1P54277 932 aaKnown RBP9.4□□□□□ -0.91
VCL-206ENST00000623461 FAM160B1Q5W0V3 765 aa9.4□□□□□ -0.91
VCL-206ENST00000623461 CCDC80Q76M96 950 aa9.4□□□□□ -0.91
VCL-206ENST00000623461 CPXCR1Q8N123 301 aa9.4□□□□□ -0.91
VCL-206ENST00000623461 C4orf33Q8N1A6 199 aa9.4□□□□□ -0.91
VCL-206ENST00000623461 FAM20AQ96MK3 541 aa9.4□□□□□ -0.91
VCL-206ENST00000623461 TEKT2Q9UIF3 430 aa9.4□□□□□ -0.91
VCL-206ENST00000623461 NLRP1Q9C000 1473 aa9.4□□□□□ -0.91
VCL-206ENST00000623461 UBAP1LF5GYI3 381 aa9.4□□□□□ -0.91
VCL-206ENST00000623461 XPO1O14980 1071 aaKnown RBP9.4□□□□□ -0.91
VCL-206ENST00000623461 CAND2O75155 1236 aa9.4□□□□□ -0.91
VCL-206ENST00000623461 AP1G2O75843 785 aa9.4□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms