RNA–Protein interactions for RNA: ENST00000615540.4

PDLIM5-222, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 6,219 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-222ENST00000615540 KRT14P02533 472 aa9.52□□□□□ -0.89
PDLIM5-222ENST00000615540 INHBAP08476 426 aa9.52□□□□□ -0.89
PDLIM5-222ENST00000615540 RGS7P49802 495 aa9.52□□□□□ -0.89
PDLIM5-222ENST00000615540 LMNB2Q03252 620 aa9.52□□□□□ -0.89
PDLIM5-222ENST00000615540 ARHGEF18Q6ZSZ5 1173 aa9.52□□□□□ -0.89
PDLIM5-222ENST00000615540 FBXO16Q8IX29 292 aaPredicted RBP9.52□□□□□ -0.89
PDLIM5-222ENST00000615540 CCDC197Q8NCU1 140 aa9.52□□□□□ -0.89
PDLIM5-222ENST00000615540 OR6J1Q8NGC5 347 aa9.52□□□□□ -0.89
PDLIM5-222ENST00000615540 SCYL1Q96KG9 808 aa9.52□□□□□ -0.89
PDLIM5-222ENST00000615540 PNMA3Q9UL41 463 aa9.52□□□□□ -0.89
PDLIM5-222ENST00000615540 DYNC1LI1Q9Y6G9 523 aaKnown RBP9.52□□□□□ -0.89
PDLIM5-222ENST00000615540 GRAP2O75791 330 aa9.51□□□□□ -0.89
PDLIM5-222ENST00000615540 DGAT1O75907 488 aa9.51□□□□□ -0.89
PDLIM5-222ENST00000615540 DLG4P78352 724 aa9.51□□□□□ -0.89
PDLIM5-222ENST00000615540 GPS1Q13098 491 aa9.51□□□□□ -0.89
PDLIM5-222ENST00000615540 OTOP1Q7RTM1 612 aa9.51□□□□□ -0.89
PDLIM5-222ENST00000615540 HACE1Q8IYU2 909 aa9.51□□□□□ -0.89
PDLIM5-222ENST00000615540 USP38Q8NB14 1042 aa9.51□□□□□ -0.89
PDLIM5-222ENST00000615540 SYTL5Q8TDW5 730 aaPredicted RBP9.51□□□□□ -0.89
PDLIM5-222ENST00000615540 DEPDC1BQ8WUY9 529 aa9.51□□□□□ -0.89
PDLIM5-222ENST00000615540 KCND2Q9NZV8 630 aa9.51□□□□□ -0.89
PDLIM5-222ENST00000615540 INPP5FQ9Y2H2 1132 aa9.51□□□□□ -0.89
PDLIM5-222ENST00000615540 CCDC195A0A1B0GUA6 201 aa9.51□□□□□ -0.89
PDLIM5-222ENST00000615540 MEIS2O14770 477 aa9.51□□□□□ -0.89
PDLIM5-222ENST00000615540 CRCPO75575 148 aa9.51□□□□□ -0.89
PDLIM5-222ENST00000615540 NCOA4Q13772 614 aa9.51□□□□□ -0.89
PDLIM5-222ENST00000615540 SURF1Q15526 300 aa9.51□□□□□ -0.89
PDLIM5-222ENST00000615540 LY6KQ17RY6 165 aa9.51□□□□□ -0.89
PDLIM5-222ENST00000615540 SMTNL2Q2TAL5 461 aa9.51□□□□□ -0.89
PDLIM5-222ENST00000615540 XKR3Q5GH77 459 aa9.51□□□□□ -0.89
PDLIM5-222ENST00000615540 RBBP8NLQ8NC74 664 aaPredicted RBP9.51□□□□□ -0.89
PDLIM5-222ENST00000615540 FAM193BQ96PV7 902 aaPredicted RBP9.51□□□□□ -0.89
PDLIM5-222ENST00000615540 IP6K2Q9UHH9 426 aa9.51□□□□□ -0.89
PDLIM5-222ENST00000615540 BCL9LQ86UU0 1499 aa9.51□□□□□ -0.89
PDLIM5-222ENST00000615540 MIF4GDA9UHW6 222 aaKnown RBP9.51□□□□□ -0.89
PDLIM5-222ENST00000615540 C19orf81C9J6K1 198 aa9.51□□□□□ -0.89
PDLIM5-222ENST00000615540 RNF225M0QZC1 329 aaPredicted RBP9.51□□□□□ -0.89
PDLIM5-222ENST00000615540 CLTAP09496 248 aa9.51□□□□□ -0.89
PDLIM5-222ENST00000615540 TBXAS1P24557 533 aaPredicted RBP9.51□□□□□ -0.89
PDLIM5-222ENST00000615540 HOXA10P31260 410 aaPredicted RBP9.51□□□□□ -0.89
PDLIM5-222ENST00000615540 NPTX2P47972 431 aa9.51□□□□□ -0.89
PDLIM5-222ENST00000615540 NME3Q13232 169 aa9.51□□□□□ -0.89
PDLIM5-222ENST00000615540 LONRF1Q17RB8 773 aa9.51□□□□□ -0.89
PDLIM5-222ENST00000615540 CCDC62Q6P9F0 684 aa9.51□□□□□ -0.89
PDLIM5-222ENST00000615540 ZNF720Q7Z2F6 126 aa9.51□□□□□ -0.89
PDLIM5-222ENST00000615540 MAP7D3Q8IWC1 876 aa9.51□□□□□ -0.89
PDLIM5-222ENST00000615540 SIX6OS1Q8N1H7 587 aa9.51□□□□□ -0.89
PDLIM5-222ENST00000615540 GGT7Q9UJ14 662 aa9.51□□□□□ -0.89
PDLIM5-222ENST00000615540 SLC26A4O43511 780 aa9.51□□□□□ -0.89
PDLIM5-222ENST00000615540 CREB3O43889 395 aa9.51□□□□□ -0.89
PDLIM5-222ENST00000615540 EXTL3O43909 919 aa9.51□□□□□ -0.89
PDLIM5-222ENST00000615540 PSMC4P43686 418 aa9.51□□□□□ -0.89
PDLIM5-222ENST00000615540 BACE1P56817 501 aa9.51□□□□□ -0.89
PDLIM5-222ENST00000615540 SESN3P58005 492 aa9.51□□□□□ -0.89
PDLIM5-222ENST00000615540 NFX1Q12986 1120 aaKnown RBP9.51□□□□□ -0.89
PDLIM5-222ENST00000615540 EFCAB12Q6NXP0 572 aa9.51□□□□□ -0.89
PDLIM5-222ENST00000615540 C15orf52Q6ZUT6 534 aaKnown RBP9.51□□□□□ -0.89
PDLIM5-222ENST00000615540 TRIM59Q8IWR1 403 aa9.51□□□□□ -0.89
PDLIM5-222ENST00000615540 UBA3Q8TBC4 463 aa9.51□□□□□ -0.89
PDLIM5-222ENST00000615540 STMN2Q93045 179 aa9.51□□□□□ -0.89
PDLIM5-222ENST00000615540 MCUR1Q96AQ8 359 aa9.51□□□□□ -0.89
PDLIM5-222ENST00000615540 C18orf8Q96DM3 657 aa9.51□□□□□ -0.89
PDLIM5-222ENST00000615540 SNF8Q96H20 258 aa9.51□□□□□ -0.89
PDLIM5-222ENST00000615540 NDC80O14777 642 aa9.51□□□□□ -0.89
PDLIM5-222ENST00000615540 SLC4A1P02730 911 aa9.51□□□□□ -0.89
PDLIM5-222ENST00000615540 NUMBP49757 651 aa9.51□□□□□ -0.89
PDLIM5-222ENST00000615540 LGSNQ5TDP6 509 aa9.51□□□□□ -0.89
PDLIM5-222ENST00000615540 ATP6V1G3Q96LB4 118 aa9.51□□□□□ -0.89
PDLIM5-222ENST00000615540 CFAP57Q96MR6 1250 aa9.51□□□□□ -0.89
PDLIM5-222ENST00000615540 CICQ96RK0 1608 aaPredicted RBP9.51□□□□□ -0.89
PDLIM5-222ENST00000615540 PRMT1Q99873 361 aaKnown RBP9.51□□□□□ -0.89
PDLIM5-222ENST00000615540 ELAC2Q9BQ52 826 aaKnown RBP9.51□□□□□ -0.89
PDLIM5-222ENST00000615540 TMEM8AQ9HCN3 771 aa9.51□□□□□ -0.89
PDLIM5-222ENST00000615540 DBR1Q9UK59 544 aaKnown RBP9.51□□□□□ -0.89
PDLIM5-222ENST00000615540 H3BQF6 201 aa9.5□□□□□ -0.89
PDLIM5-222ENST00000615540 PHF2O75151 1096 aa9.5□□□□□ -0.89
PDLIM5-222ENST00000615540 CSDE1O75534 798 aaKnown RBP9.5□□□□□ -0.89
PDLIM5-222ENST00000615540 CALB1P05937 261 aa9.5□□□□□ -0.89
PDLIM5-222ENST00000615540 ZSCAN20P17040 1043 aaPredicted RBP9.5□□□□□ -0.89
PDLIM5-222ENST00000615540 FAM102AQ5T9C2 384 aaPredicted RBP9.5□□□□□ -0.89
PDLIM5-222ENST00000615540 DLK2Q6UY11 383 aa9.5□□□□□ -0.89
PDLIM5-222ENST00000615540 ZIM3Q96PE6 472 aa9.5□□□□□ -0.89
PDLIM5-222ENST00000615540 TARS2Q9BW92 718 aaKnown RBP9.5□□□□□ -0.89
PDLIM5-222ENST00000615540 PARVAQ9NVD7 372 aa9.5□□□□□ -0.89
PDLIM5-222ENST00000615540 ZRANB2O95218 330 aaKnown RBP eCLIP9.5□□□□□ -0.89
PDLIM5-222ENST00000615540 MYBL1P10243 752 aa9.5□□□□□ -0.89
PDLIM5-222ENST00000615540 RFX1P22670 979 aa9.5□□□□□ -0.89
PDLIM5-222ENST00000615540 GTF2H1P32780 548 aa9.5□□□□□ -0.89
PDLIM5-222ENST00000615540 IL9RQ01113 521 aa9.5□□□□□ -0.89
PDLIM5-222ENST00000615540 TNFAIP2Q03169 654 aa9.5□□□□□ -0.89
PDLIM5-222ENST00000615540 AMHR2Q16671 573 aa9.5□□□□□ -0.89
PDLIM5-222ENST00000615540 ZBED8Q8IZ13 594 aa9.5□□□□□ -0.89
PDLIM5-222ENST00000615540 MMTAG2Q9BU76 263 aaKnown RBP9.5□□□□□ -0.89
PDLIM5-222ENST00000615540 EDEM3Q9BZQ6 932 aa9.5□□□□□ -0.89
PDLIM5-222ENST00000615540 RCCD1A6NED2 376 aa9.5□□□□□ -0.89
PDLIM5-222ENST00000615540 ADM5C9JUS6 153 aa9.5□□□□□ -0.89
PDLIM5-222ENST00000615540 PODXLO00592 558 aa9.5□□□□□ -0.89
PDLIM5-222ENST00000615540 HSPA6P17066 643 aa9.5□□□□□ -0.89
PDLIM5-222ENST00000615540 CHRNA3P32297 505 aa9.5□□□□□ -0.89
PDLIM5-222ENST00000615540 WDR72Q3MJ13 1102 aa9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms