RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 OSTNP61366 133 aa18.09■□□□□ 0.49
CCDC28A-202ENST00000611852 PNOCQ13519 176 aa18.09■□□□□ 0.49
CCDC28A-202ENST00000611852 ZNF507Q8TCN5 953 aa18.09■□□□□ 0.49
CCDC28A-202ENST00000611852 GUCD1Q96NT3 240 aa18.09■□□□□ 0.49
CCDC28A-202ENST00000611852 CCDC94Q9BW85 323 aaPredicted RBP18.09■□□□□ 0.49
CCDC28A-202ENST00000611852 TMEM206Q9H813 350 aa18.09■□□□□ 0.49
CCDC28A-202ENST00000611852 SLC39A2Q9NP94 309 aa18.09■□□□□ 0.49
CCDC28A-202ENST00000611852 KINO60870 393 aaKnown RBP18.08■□□□□ 0.49
CCDC28A-202ENST00000611852 HOXD13P35453 343 aa18.08■□□□□ 0.49
CCDC28A-202ENST00000611852 SCNN1GP51170 649 aa18.08■□□□□ 0.49
CCDC28A-202ENST00000611852 RNASELQ05823 741 aaKnown RBP18.08■□□□□ 0.49
CCDC28A-202ENST00000611852 STK4Q13043 487 aa18.08■□□□□ 0.49
CCDC28A-202ENST00000611852 PSMD2Q13200 908 aa18.08■□□□□ 0.49
CCDC28A-202ENST00000611852 SPOUT1Q5T280 376 aaKnown RBP18.08■□□□□ 0.49
CCDC28A-202ENST00000611852 ELOA2Q8IYF1 753 aaPredicted RBP18.08■□□□□ 0.49
CCDC28A-202ENST00000611852 SYCP3Q8IZU3 236 aa18.08■□□□□ 0.49
CCDC28A-202ENST00000611852 FBXO22Q8NEZ5 403 aa18.08■□□□□ 0.49
CCDC28A-202ENST00000611852 SCFD1Q8WVM8 642 aa18.08■□□□□ 0.49
CCDC28A-202ENST00000611852 PLVAPQ9BX97 442 aa18.08■□□□□ 0.49
CCDC28A-202ENST00000611852 CXCL16Q9H2A7 254 aa18.08■□□□□ 0.49
CCDC28A-202ENST00000611852 MIOSQ9NXC5 875 aa18.08■□□□□ 0.49
CCDC28A-202ENST00000611852 RFXAPO00287 272 aa18.08■□□□□ 0.48
CCDC28A-202ENST00000611852 FAM189A1O60320 539 aa18.08■□□□□ 0.48
CCDC28A-202ENST00000611852 B4GALT3O60512 393 aa18.08■□□□□ 0.48
CCDC28A-202ENST00000611852 RHOBTB3O94955 611 aa18.08■□□□□ 0.48
CCDC28A-202ENST00000611852 RB1P06400 928 aa18.08■□□□□ 0.48
CCDC28A-202ENST00000611852 LAG3P18627 525 aa18.08■□□□□ 0.48
CCDC28A-202ENST00000611852 ADSSP30520 456 aa18.08■□□□□ 0.48
CCDC28A-202ENST00000611852 KCNB1Q14721 858 aa18.08■□□□□ 0.48
CCDC28A-202ENST00000611852 SEZ6Q53EL9 994 aa18.08■□□□□ 0.48
CCDC28A-202ENST00000611852 SLFN12LQ6IEE8 588 aa18.08■□□□□ 0.48
CCDC28A-202ENST00000611852 ZNF280BQ86YH2 543 aa18.08■□□□□ 0.48
CCDC28A-202ENST00000611852 COLGALT1Q8NBJ5 622 aa18.08■□□□□ 0.48
CCDC28A-202ENST00000611852 KIAA0895Q8NCT3 520 aa18.08■□□□□ 0.48
CCDC28A-202ENST00000611852 ACAP3Q96P50 834 aa18.08■□□□□ 0.48
CCDC28A-202ENST00000611852 CDX2Q99626 313 aaPredicted RBP18.08■□□□□ 0.48
CCDC28A-202ENST00000611852 MSTO1Q9BUK6 570 aa18.08■□□□□ 0.48
CCDC28A-202ENST00000611852 NRDE2Q9H7Z3 1164 aa18.08■□□□□ 0.48
CCDC28A-202ENST00000611852 AAASQ9NRG9 546 aa18.08■□□□□ 0.48
CCDC28A-202ENST00000611852 UBE4BO95155 1302 aa18.07■□□□□ 0.48
CCDC28A-202ENST00000611852 H3BNC9 293 aa18.07■□□□□ 0.48
CCDC28A-202ENST00000611852 PTGESO14684 152 aa18.07■□□□□ 0.48
CCDC28A-202ENST00000611852 OGTO15294 1046 aa18.07■□□□□ 0.48
CCDC28A-202ENST00000611852 LPXNO60711 386 aa18.07■□□□□ 0.48
CCDC28A-202ENST00000611852 ZC3H11AO75152 810 aaKnown RBP eCLIP18.07■□□□□ 0.48
CCDC28A-202ENST00000611852 DDHD2O94830 711 aa18.07■□□□□ 0.48
CCDC28A-202ENST00000611852 YARSP54577 528 aaKnown RBP18.07■□□□□ 0.48
CCDC28A-202ENST00000611852 BMT2Q1RMZ1 405 aa18.07■□□□□ 0.48
CCDC28A-202ENST00000611852 KCNT2Q6UVM3 1135 aa18.07■□□□□ 0.48
CCDC28A-202ENST00000611852 GDPD5Q8WTR4 605 aa18.07■□□□□ 0.48
CCDC28A-202ENST00000611852 P2RX5Q93086 422 aa18.07■□□□□ 0.48
CCDC28A-202ENST00000611852 CCDC47Q96A33 483 aaKnown RBP18.07■□□□□ 0.48
CCDC28A-202ENST00000611852 RPS6KC1Q96S38 1066 aa18.07■□□□□ 0.48
CCDC28A-202ENST00000611852 TOPORSQ9NS56 1045 aaPredicted RBP18.07■□□□□ 0.48
CCDC28A-202ENST00000611852 LMBRD1Q9NUN5 540 aa18.07■□□□□ 0.48
CCDC28A-202ENST00000611852 DNAJB4Q9UDY4 337 aa18.07■□□□□ 0.48
CCDC28A-202ENST00000611852 HOOK1Q9UJC3 728 aaKnown RBP18.07■□□□□ 0.48
CCDC28A-202ENST00000611852 PLAGL2Q9UPG8 496 aa18.07■□□□□ 0.48
CCDC28A-202ENST00000611852 PCDHB12Q9Y5F1 795 aa18.07■□□□□ 0.48
CCDC28A-202ENST00000611852 TDRD15B5MCY1 1934 aaKnown RBP18.06■□□□□ 0.48
CCDC28A-202ENST00000611852 MEFVO15553 781 aaPredicted RBP18.06■□□□□ 0.48
CCDC28A-202ENST00000611852 PBX3P40426 434 aa18.06■□□□□ 0.48
CCDC28A-202ENST00000611852 TNFSF9P41273 254 aa18.06■□□□□ 0.48
CCDC28A-202ENST00000611852 BCAR1P56945 870 aa18.06■□□□□ 0.48
CCDC28A-202ENST00000611852 GRIK3Q13003 919 aa18.06■□□□□ 0.48
CCDC28A-202ENST00000611852 ZBTB41Q5SVQ8 909 aa18.06■□□□□ 0.48
CCDC28A-202ENST00000611852 ALKAL1Q6UXT8 129 aa18.06■□□□□ 0.48
CCDC28A-202ENST00000611852 KLHL23Q8NBE8 558 aa18.06■□□□□ 0.48
CCDC28A-202ENST00000611852 SPATA20Q8TB22 786 aa18.06■□□□□ 0.48
CCDC28A-202ENST00000611852 POMGNT1Q8WZA1 660 aa18.06■□□□□ 0.48
CCDC28A-202ENST00000611852 ERCC4Q92889 916 aaPredicted RBP18.06■□□□□ 0.48
CCDC28A-202ENST00000611852 ZNF558Q96NG5 402 aa18.06■□□□□ 0.48
CCDC28A-202ENST00000611852 C11orf84Q9BUA3 381 aaPredicted RBP18.06■□□□□ 0.48
CCDC28A-202ENST00000611852 GBP3Q9H0R5 595 aa18.06■□□□□ 0.48
CCDC28A-202ENST00000611852 TRIP11Q15643 1979 aa18.05■□□□□ 0.48
CCDC28A-202ENST00000611852 CITO14578 2027 aa18.05■□□□□ 0.48
CCDC28A-202ENST00000611852 CLTAP09496 248 aa18.05■□□□□ 0.48
CCDC28A-202ENST00000611852 ALDH7A1P49419 539 aaKnown RBP18.05■□□□□ 0.48
CCDC28A-202ENST00000611852 DSC1Q08554 894 aa18.05■□□□□ 0.48
CCDC28A-202ENST00000611852 GPM6BQ13491 265 aa18.05■□□□□ 0.48
CCDC28A-202ENST00000611852 ADGRE1Q14246 886 aa18.05■□□□□ 0.48
CCDC28A-202ENST00000611852 KYAT1Q16773 422 aa18.05■□□□□ 0.48
CCDC28A-202ENST00000611852 SLC10A6Q3KNW5 377 aa18.05■□□□□ 0.48
CCDC28A-202ENST00000611852 XKR4Q5GH76 650 aa18.05■□□□□ 0.48
CCDC28A-202ENST00000611852 NELFCDQ8IXH7 590 aa18.05■□□□□ 0.48
CCDC28A-202ENST00000611852 MYLIPQ8WY64 445 aa18.05■□□□□ 0.48
CCDC28A-202ENST00000611852 SNX27Q96L92 541 aa18.05■□□□□ 0.48
CCDC28A-202ENST00000611852 FAM193BQ96PV7 902 aaPredicted RBP18.05■□□□□ 0.48
CCDC28A-202ENST00000611852 GSDMAQ96QA5 445 aa18.05■□□□□ 0.48
CCDC28A-202ENST00000611852 AGO2Q9UKV8 859 aaKnown RBP18.05■□□□□ 0.48
CCDC28A-202ENST00000611852 PCDHA5Q9Y5H7 936 aa18.05■□□□□ 0.48
CCDC28A-202ENST00000611852 COL4A4P53420 1690 aaPredicted RBP18.05■□□□□ 0.48
CCDC28A-202ENST00000611852 TRANK1O15050 2925 aa18.05■□□□□ 0.48
CCDC28A-202ENST00000611852 TGFB1I1O43294 461 aa18.04■□□□□ 0.48
CCDC28A-202ENST00000611852 ITGB1P05556 798 aa18.04■□□□□ 0.48
CCDC28A-202ENST00000611852 THP07101 528 aa18.04■□□□□ 0.48
CCDC28A-202ENST00000611852 GALTP07902 379 aa18.04■□□□□ 0.48
CCDC28A-202ENST00000611852 CXCL8P10145 99 aa18.04■□□□□ 0.48
CCDC28A-202ENST00000611852 GARTP22102 1010 aa18.04■□□□□ 0.48
CCDC28A-202ENST00000611852 NAB2Q15742 525 aa18.04■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms