RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 URGCPQ8TCY9 931 aa21.12■□□□□ 0.97
UPF1-209ENST00000600310 POMGNT1Q8WZA1 660 aa21.12■□□□□ 0.97
UPF1-209ENST00000600310 ACAP3Q96P50 834 aa21.12■□□□□ 0.97
UPF1-209ENST00000600310 MSTO1Q9BUK6 570 aa21.12■□□□□ 0.97
UPF1-209ENST00000600310 KLK14Q9P0G3 267 aa21.12■□□□□ 0.97
UPF1-209ENST00000600310 KANSL3Q9P2N6 904 aa21.12■□□□□ 0.97
UPF1-209ENST00000600310 INPP5FQ9Y2H2 1132 aa21.12■□□□□ 0.97
UPF1-209ENST00000600310 MRPL42Q9Y6G3 142 aaKnown RBP21.12■□□□□ 0.97
UPF1-209ENST00000600310 KIF20AO95235 890 aa21.11■□□□□ 0.97
UPF1-209ENST00000600310 CLTAP09496 248 aa21.11■□□□□ 0.97
UPF1-209ENST00000600310 LINC00271P0C7V0 271 aa21.11■□□□□ 0.97
UPF1-209ENST00000600310 OSTNP61366 133 aa21.11■□□□□ 0.97
UPF1-209ENST00000600310 GUF1Q8N442 669 aaKnown RBP21.11■□□□□ 0.97
UPF1-209ENST00000600310 GSTCDQ8NEC7 633 aa21.11■□□□□ 0.97
UPF1-209ENST00000600310 CLP1Q92989 425 aaKnown RBP21.11■□□□□ 0.97
UPF1-209ENST00000600310 ZFP42Q96MM3 310 aa21.11■□□□□ 0.97
UPF1-209ENST00000600310 NUP62CLQ9H1M0 184 aa21.11■□□□□ 0.97
UPF1-209ENST00000600310 TYW1Q9NV66 732 aaKnown RBP21.11■□□□□ 0.97
UPF1-209ENST00000600310 TBC1D13Q9NVG8 400 aa21.11■□□□□ 0.97
UPF1-209ENST00000600310 MIOSQ9NXC5 875 aa21.11■□□□□ 0.97
UPF1-209ENST00000600310 KIAA1468Q9P260 1216 aa21.11■□□□□ 0.97
UPF1-209ENST00000600310 CGNQ9P2M7 1197 aaKnown RBP21.11■□□□□ 0.97
UPF1-209ENST00000600310 AGO2Q9UKV8 859 aaKnown RBP21.11■□□□□ 0.97
UPF1-209ENST00000600310 KIAA0391O15091 583 aaKnown RBP21.1■□□□□ 0.97
UPF1-209ENST00000600310 YARSP54577 528 aaKnown RBP21.1■□□□□ 0.97
UPF1-209ENST00000600310 ERVK-21P61565 698 aa21.1■□□□□ 0.97
UPF1-209ENST00000600310 SEZ6Q53EL9 994 aa21.1■□□□□ 0.97
UPF1-209ENST00000600310 COBLL1Q53SF7 1204 aa21.1■□□□□ 0.97
UPF1-209ENST00000600310 XKR4Q5GH76 650 aa21.1■□□□□ 0.97
UPF1-209ENST00000600310 ZBTB41Q5SVQ8 909 aa21.1■□□□□ 0.97
UPF1-209ENST00000600310 ARMCX5Q6P1M9 558 aa21.1■□□□□ 0.97
UPF1-209ENST00000600310 HS2ST1Q7LGA3 356 aa21.1■□□□□ 0.97
UPF1-209ENST00000600310 SAMD11Q96NU1 681 aa21.1■□□□□ 0.97
UPF1-209ENST00000600310 TGS1Q96RS0 853 aaKnown RBP21.1■□□□□ 0.97
UPF1-209ENST00000600310 CBWD1Q9BRT8 395 aa21.1■□□□□ 0.97
UPF1-209ENST00000600310 KCTD10Q9H3F6 313 aa21.1■□□□□ 0.97
UPF1-209ENST00000600310 ZNF576Q9H609 170 aa21.1■□□□□ 0.97
UPF1-209ENST00000600310 CWH43Q9H720 699 aa21.1■□□□□ 0.97
UPF1-209ENST00000600310 AGPAT3Q9NRZ7 376 aa21.1■□□□□ 0.97
UPF1-209ENST00000600310 TOPORSQ9NS56 1045 aaPredicted RBP21.1■□□□□ 0.97
UPF1-209ENST00000600310 POU5F1Q01860 360 aaKnown RBP21.09■□□□□ 0.97
UPF1-209ENST00000600310 SLC10A6Q3KNW5 377 aa21.09■□□□□ 0.97
UPF1-209ENST00000600310 ALKAL1Q6UXT8 129 aa21.09■□□□□ 0.97
UPF1-209ENST00000600310 SMYD4Q8IYR2 804 aaPredicted RBP21.09■□□□□ 0.97
UPF1-209ENST00000600310 GOLGA5Q8TBA6 731 aa21.09■□□□□ 0.97
UPF1-209ENST00000600310 SNX27Q96L92 541 aa21.09■□□□□ 0.97
UPF1-209ENST00000600310 RPS6KC1Q96S38 1066 aa21.09■□□□□ 0.97
UPF1-209ENST00000600310 HCSTQ9UBK5 93 aa21.09■□□□□ 0.97
UPF1-209ENST00000600310 CPSF3Q9UKF6 684 aaKnown RBP21.09■□□□□ 0.97
UPF1-209ENST00000600310 MAPK8IP1Q9UQF2 711 aa21.09■□□□□ 0.97
UPF1-209ENST00000600310 RWDD3Q9Y3V2 267 aa21.09■□□□□ 0.97
UPF1-209ENST00000600310 PTGESO14684 152 aa21.08■□□□□ 0.97
UPF1-209ENST00000600310 MEFVO15553 781 aaPredicted RBP21.08■□□□□ 0.97
UPF1-209ENST00000600310 LDHAP00338 332 aaKnown RBP21.08■□□□□ 0.97
UPF1-209ENST00000600310 POMCP01189 267 aa21.08■□□□□ 0.97
UPF1-209ENST00000600310 TNFSF9P41273 254 aa21.08■□□□□ 0.97
UPF1-209ENST00000600310 SCNN1GP51170 649 aa21.08■□□□□ 0.97
UPF1-209ENST00000600310 GRIK3Q13003 919 aa21.08■□□□□ 0.97
UPF1-209ENST00000600310 MORC3Q14149 939 aa21.08■□□□□ 0.97
UPF1-209ENST00000600310 ZNF697Q5TEC3 545 aa21.08■□□□□ 0.97
UPF1-209ENST00000600310 SPRED2Q7Z698 418 aa21.08■□□□□ 0.97
UPF1-209ENST00000600310 C12orf56Q8IXR9 622 aa21.08■□□□□ 0.97
UPF1-209ENST00000600310 TRIML1Q8N9V2 468 aa21.08■□□□□ 0.97
UPF1-209ENST00000600310 GBF1Q92538 1859 aa21.08■□□□□ 0.97
UPF1-209ENST00000600310 CXCL16Q9H2A7 254 aa21.08■□□□□ 0.97
UPF1-209ENST00000600310 TTYH1Q9H313 450 aaPredicted RBP21.08■□□□□ 0.97
UPF1-209ENST00000600310 RPF1Q9H9Y2 349 aaKnown RBP21.08■□□□□ 0.97
UPF1-209ENST00000600310 PLEKHA5Q9HAU0 1116 aa21.08■□□□□ 0.97
UPF1-209ENST00000600310 COL6A3P12111 3177 aa21.07■□□□□ 0.96
UPF1-209ENST00000600310 FNDC1Q4ZHG4 1894 aaPredicted RBP21.07■□□□□ 0.96
UPF1-209ENST00000600310 PDXKO00764 312 aa21.07■□□□□ 0.96
UPF1-209ENST00000600310 EXTL3O43909 919 aa21.07■□□□□ 0.96
UPF1-209ENST00000600310 ADRB2P07550 413 aa21.07■□□□□ 0.96
UPF1-209ENST00000600310 LAG3P18627 525 aa21.07■□□□□ 0.96
UPF1-209ENST00000600310 BMPR1AP36894 532 aa21.07■□□□□ 0.96
UPF1-209ENST00000600310 PRCPP42785 496 aa21.07■□□□□ 0.96
UPF1-209ENST00000600310 ACOT2P49753 483 aa21.07■□□□□ 0.96
UPF1-209ENST00000600310 RNASELQ05823 741 aaKnown RBP21.07■□□□□ 0.96
UPF1-209ENST00000600310 ENOX2Q16206 610 aaKnown RBP21.07■□□□□ 0.96
UPF1-209ENST00000600310 SPOUT1Q5T280 376 aaKnown RBP21.07■□□□□ 0.96
UPF1-209ENST00000600310 ISM2Q6H9L7 571 aa21.07■□□□□ 0.96
UPF1-209ENST00000600310 CRELD2Q6UXH1 353 aaPredicted RBP21.07■□□□□ 0.96
UPF1-209ENST00000600310 C17orf80Q9BSJ5 609 aa21.07■□□□□ 0.96
UPF1-209ENST00000600310 PCIF1Q9H4Z3 704 aa21.07■□□□□ 0.96
UPF1-209ENST00000600310 NRDE2Q9H7Z3 1164 aa21.07■□□□□ 0.96
UPF1-209ENST00000600310 AAASQ9NRG9 546 aa21.07■□□□□ 0.96
UPF1-209ENST00000600310 CNTN3Q9P232 1028 aa21.07■□□□□ 0.96
UPF1-209ENST00000600310 PLAGL2Q9UPG8 496 aa21.07■□□□□ 0.96
UPF1-209ENST00000600310 TRAF3IP3Q9Y228 551 aa21.07■□□□□ 0.96
UPF1-209ENST00000600310 TTC26A0AVF1 554 aa21.06■□□□□ 0.96
UPF1-209ENST00000600310 BIN1O00499 593 aa21.06■□□□□ 0.96
UPF1-209ENST00000600310 CLIC2O15247 247 aa21.06■□□□□ 0.96
UPF1-209ENST00000600310 DDHD2O94830 711 aa21.06■□□□□ 0.96
UPF1-209ENST00000600310 RB1P06400 928 aa21.06■□□□□ 0.96
UPF1-209ENST00000600310 CXCL8P10145 99 aa21.06■□□□□ 0.96
UPF1-209ENST00000600310 KCNE1P15382 129 aa21.06■□□□□ 0.96
UPF1-209ENST00000600310 BMP6P22004 513 aa21.06■□□□□ 0.96
UPF1-209ENST00000600310 DSC1Q08554 894 aa21.06■□□□□ 0.96
UPF1-209ENST00000600310 EPC2Q52LR7 807 aa21.06■□□□□ 0.96
UPF1-209ENST00000600310 ZNF280BQ86YH2 543 aa21.06■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms