RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 ADPGKQ9BRR6 497 aa21.38■■□□□ 1.01
SHKBP1-221ENST00000599833 C11orf84Q9BUA3 381 aaPredicted RBP21.38■■□□□ 1.01
SHKBP1-221ENST00000599833 ALG13Q9NP73 1137 aaKnown RBP21.38■■□□□ 1.01
SHKBP1-221ENST00000599833 LMCD1Q9NZU5 365 aa21.38■■□□□ 1.01
SHKBP1-221ENST00000599833 KLK14Q9P0G3 267 aa21.38■■□□□ 1.01
SHKBP1-221ENST00000599833 STYXL1Q9Y6J8 313 aa21.38■■□□□ 1.01
SHKBP1-221ENST00000599833 ANKRD63C9JTQ0 380 aa21.37■■□□□ 1.01
SHKBP1-221ENST00000599833 EFEMP2O95967 443 aa21.37■■□□□ 1.01
SHKBP1-221ENST00000599833 PRR29P0C7W0 189 aa21.37■■□□□ 1.01
SHKBP1-221ENST00000599833 AFMP43652 599 aa21.37■■□□□ 1.01
SHKBP1-221ENST00000599833 SLC11A1P49279 550 aa21.37■■□□□ 1.01
SHKBP1-221ENST00000599833 PLCB3Q01970 1234 aa21.37■■□□□ 1.01
SHKBP1-221ENST00000599833 HERC4Q5GLZ8 1057 aaPredicted RBP21.37■■□□□ 1.01
SHKBP1-221ENST00000599833 UNC13DQ70J99 1090 aa21.37■■□□□ 1.01
SHKBP1-221ENST00000599833 SLC17A8Q8NDX2 589 aa21.37■■□□□ 1.01
SHKBP1-221ENST00000599833 HVCN1Q96D96 273 aa21.37■■□□□ 1.01
SHKBP1-221ENST00000599833 VN1R3Q9BXE9 311 aa21.37■■□□□ 1.01
SHKBP1-221ENST00000599833 LRRC27Q9C0I9 530 aa21.37■■□□□ 1.01
SHKBP1-221ENST00000599833 MRPL44Q9H9J2 332 aaKnown RBP21.37■■□□□ 1.01
SHKBP1-221ENST00000599833 USP25Q9UHP3 1055 aa21.37■■□□□ 1.01
SHKBP1-221ENST00000599833 FGF18O76093 207 aa21.36■■□□□ 1.01
SHKBP1-221ENST00000599833 GALTP07902 379 aa21.36■■□□□ 1.01
SHKBP1-221ENST00000599833 ADSSP30520 456 aa21.36■■□□□ 1.01
SHKBP1-221ENST00000599833 AMPD3Q01432 767 aa21.36■■□□□ 1.01
SHKBP1-221ENST00000599833 ZBTB41Q5SVQ8 909 aa21.36■■□□□ 1.01
SHKBP1-221ENST00000599833 L1TD1Q5T7N2 865 aaKnown RBP21.36■■□□□ 1.01
SHKBP1-221ENST00000599833 ZBTB33Q86T24 672 aa21.36■■□□□ 1.01
SHKBP1-221ENST00000599833 CCDC65Q8IXS2 484 aa21.36■■□□□ 1.01
SHKBP1-221ENST00000599833 MRPL38Q96DV4 380 aaKnown RBP21.36■■□□□ 1.01
SHKBP1-221ENST00000599833 MARCH5Q9NX47 278 aa21.36■■□□□ 1.01
SHKBP1-221ENST00000599833 PARP2Q9UGN5 583 aa21.36■■□□□ 1.01
SHKBP1-221ENST00000599833 C5orf42Q9H799 3197 aa21.35■■□□□ 1.01
SHKBP1-221ENST00000599833 A0A0B4J269 797 aa21.35■■□□□ 1.01
SHKBP1-221ENST00000599833 NT5C1B-RDH14C9J2C7 533 aa21.35■■□□□ 1.01
SHKBP1-221ENST00000599833 ZNF202O95125 648 aa21.35■■□□□ 1.01
SHKBP1-221ENST00000599833 IGFBP4P22692 258 aa21.35■■□□□ 1.01
SHKBP1-221ENST00000599833 IRS1P35568 1242 aa21.35■■□□□ 1.01
SHKBP1-221ENST00000599833 ASIC1P78348 528 aa21.35■■□□□ 1.01
SHKBP1-221ENST00000599833 NOLC1Q14978 699 aaKnown RBP eCLIP21.35■■□□□ 1.01
SHKBP1-221ENST00000599833 TMEM132AQ24JP5 1023 aa21.35■■□□□ 1.01
SHKBP1-221ENST00000599833 SEZ6Q53EL9 994 aa21.35■■□□□ 1.01
SHKBP1-221ENST00000599833 KRBA2Q6ZNG9 492 aa21.35■■□□□ 1.01
SHKBP1-221ENST00000599833 HACE1Q8IYU2 909 aa21.35■■□□□ 1.01
SHKBP1-221ENST00000599833 URGCPQ8TCY9 931 aa21.35■■□□□ 1.01
SHKBP1-221ENST00000599833 POF1BQ8WVV4 589 aa21.35■■□□□ 1.01
SHKBP1-221ENST00000599833 ZNF558Q96NG5 402 aa21.35■■□□□ 1.01
SHKBP1-221ENST00000599833 KANSL3Q9P2N6 904 aa21.35■■□□□ 1.01
SHKBP1-221ENST00000599833 ANKFY1Q9P2R3 1169 aa21.35■■□□□ 1.01
SHKBP1-221ENST00000599833 GDAQ9Y2T3 454 aa21.35■■□□□ 1.01
SHKBP1-221ENST00000599833 PCDHB12Q9Y5F1 795 aa21.35■■□□□ 1.01
SHKBP1-221ENST00000599833 PVALEFA0A1B0GWK0 134 aa21.34■■□□□ 1.01
SHKBP1-221ENST00000599833 F8W810 466 aa21.34■■□□□ 1.01
SHKBP1-221ENST00000599833 FSCN2O14926 492 aa21.34■■□□□ 1.01
SHKBP1-221ENST00000599833 ZC3H11AO75152 810 aaKnown RBP eCLIP21.34■■□□□ 1.01
SHKBP1-221ENST00000599833 GADD45BO75293 160 aaPredicted RBP21.34■■□□□ 1.01
SHKBP1-221ENST00000599833 ABCD1P33897 745 aa21.34■■□□□ 1.01
SHKBP1-221ENST00000599833 TNFSF9P41273 254 aa21.34■■□□□ 1.01
SHKBP1-221ENST00000599833 DPYDQ12882 1025 aa21.34■■□□□ 1.01
SHKBP1-221ENST00000599833 CEP57L1Q8IYX8 460 aa21.34■■□□□ 1.01
SHKBP1-221ENST00000599833 MAFAQ8NHW3 353 aaPredicted RBP21.34■■□□□ 1.01
SHKBP1-221ENST00000599833 SNX27Q96L92 541 aa21.34■■□□□ 1.01
SHKBP1-221ENST00000599833 ZMAT2Q96NC0 199 aaKnown RBP21.34■■□□□ 1.01
SHKBP1-221ENST00000599833 PPP1R10Q96QC0 940 aaKnown RBP21.34■■□□□ 1.01
SHKBP1-221ENST00000599833 TMEM175Q9BSA9 504 aa21.34■■□□□ 1.01
SHKBP1-221ENST00000599833 LMAN2LQ9H0V9 348 aa21.34■■□□□ 1.01
SHKBP1-221ENST00000599833 AAASQ9NRG9 546 aa21.34■■□□□ 1.01
SHKBP1-221ENST00000599833 CACNG4Q9UBN1 327 aa21.34■■□□□ 1.01
SHKBP1-221ENST00000599833 HNRNPDLO14979 420 aaKnown RBP21.33■■□□□ 1.01
SHKBP1-221ENST00000599833 GTPBP6O43824 516 aaPredicted RBP21.33■■□□□ 1.01
SHKBP1-221ENST00000599833 GCNT3O95395 438 aa21.33■■□□□ 1.01
SHKBP1-221ENST00000599833 ADRB2P07550 413 aa21.33■■□□□ 1.01
SHKBP1-221ENST00000599833 LIG4P49917 911 aa21.33■■□□□ 1.01
SHKBP1-221ENST00000599833 ERVFC1P60507 584 aa21.33■■□□□ 1.01
SHKBP1-221ENST00000599833 GRIK3Q13003 919 aa21.33■■□□□ 1.01
SHKBP1-221ENST00000599833 CSPP1Q1MSJ5 1256 aa21.33■■□□□ 1.01
SHKBP1-221ENST00000599833 SLC10A6Q3KNW5 377 aa21.33■■□□□ 1.01
SHKBP1-221ENST00000599833 TPRNQ4KMQ1 711 aa21.33■■□□□ 1.01
SHKBP1-221ENST00000599833 SPOUT1Q5T280 376 aaKnown RBP21.33■■□□□ 1.01
SHKBP1-221ENST00000599833 THNSL1Q8IYQ7 743 aa21.33■■□□□ 1.01
SHKBP1-221ENST00000599833 RNF168Q8IYW5 571 aaPredicted RBP21.33■■□□□ 1.01
SHKBP1-221ENST00000599833 IGSF21Q96ID5 467 aa21.33■■□□□ 1.01
SHKBP1-221ENST00000599833 PAAF1Q9BRP4 392 aa21.33■■□□□ 1.01
SHKBP1-221ENST00000599833 CNTN3Q9P232 1028 aa21.33■■□□□ 1.01
SHKBP1-221ENST00000599833 LZTS1Q9Y250 596 aa21.33■■□□□ 1.01
SHKBP1-221ENST00000599833 PCDHGC5Q9Y5F6 944 aa21.33■■□□□ 1.01
SHKBP1-221ENST00000599833 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP21.32■■□□□ 1
SHKBP1-221ENST00000599833 NRP1O14786 923 aa21.32■■□□□ 1
SHKBP1-221ENST00000599833 CLDN3O15551 220 aa21.32■■□□□ 1
SHKBP1-221ENST00000599833 PRPF6O94906 941 aaKnown RBP21.32■■□□□ 1
SHKBP1-221ENST00000599833 IGFBP6P24592 240 aaPredicted RBP21.32■■□□□ 1
SHKBP1-221ENST00000599833 OSTNP61366 133 aa21.32■■□□□ 1
SHKBP1-221ENST00000599833 UBE3AQ05086 875 aa21.32■■□□□ 1
SHKBP1-221ENST00000599833 ALCAMQ13740 583 aa21.32■■□□□ 1
SHKBP1-221ENST00000599833 COL19A1Q14993 1142 aa21.32■■□□□ 1
SHKBP1-221ENST00000599833 FAM26FQ5R3K3 315 aa21.32■■□□□ 1
SHKBP1-221ENST00000599833 CLEC17AQ6ZS10 378 aa21.32■■□□□ 1
SHKBP1-221ENST00000599833 KIAA0895Q8NCT3 520 aa21.32■■□□□ 1
SHKBP1-221ENST00000599833 ZSWIM2Q8NEG5 633 aa21.32■■□□□ 1
SHKBP1-221ENST00000599833 ZNF507Q8TCN5 953 aa21.32■■□□□ 1
SHKBP1-221ENST00000599833 SCFD1Q8WVM8 642 aa21.32■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms