RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 NOC2LQ9Y3T9 749 aaKnown RBP16.56■□□□□ 0.24
TRIM28-209ENST00000597423 EVPLQ92817 2033 aa16.56■□□□□ 0.24
TRIM28-209ENST00000597423 PCNTO95613 3336 aa16.55■□□□□ 0.24
TRIM28-209ENST00000597423 ABLIM1O14639 778 aa16.55■□□□□ 0.24
TRIM28-209ENST00000597423 PMM2O15305 246 aa16.55■□□□□ 0.24
TRIM28-209ENST00000597423 PQBP1O60828 265 aaKnown RBP16.55■□□□□ 0.24
TRIM28-209ENST00000597423 CD4P01730 458 aa16.55■□□□□ 0.24
TRIM28-209ENST00000597423 COL6A1P12109 1028 aa16.55■□□□□ 0.24
TRIM28-209ENST00000597423 SELPP16109 830 aa16.55■□□□□ 0.24
TRIM28-209ENST00000597423 ATN1P54259 1190 aaPredicted RBP16.55■□□□□ 0.24
TRIM28-209ENST00000597423 YARSP54577 528 aaKnown RBP16.55■□□□□ 0.24
TRIM28-209ENST00000597423 RBL2Q08999 1139 aa16.55■□□□□ 0.24
TRIM28-209ENST00000597423 ZNF618Q5T7W0 954 aa16.55■□□□□ 0.24
TRIM28-209ENST00000597423 BRSK2Q8IWQ3 736 aa16.55■□□□□ 0.24
TRIM28-209ENST00000597423 TMEM40Q8WWA1 233 aa16.55■□□□□ 0.24
TRIM28-209ENST00000597423 DHX38Q92620 1227 aaKnown RBP16.55■□□□□ 0.24
TRIM28-209ENST00000597423 WNT8BQ93098 351 aa16.55■□□□□ 0.24
TRIM28-209ENST00000597423 ACAP3Q96P50 834 aa16.55■□□□□ 0.24
TRIM28-209ENST00000597423 MCOLN1Q9GZU1 580 aa16.55■□□□□ 0.24
TRIM28-209ENST00000597423 HAPLN2Q9GZV7 340 aa16.55■□□□□ 0.24
TRIM28-209ENST00000597423 INTS13Q9NVM9 706 aa16.55■□□□□ 0.24
TRIM28-209ENST00000597423 CPSF3Q9UKF6 684 aaKnown RBP16.55■□□□□ 0.24
TRIM28-209ENST00000597423 PITPNM1O00562 1244 aa16.54■□□□□ 0.24
TRIM28-209ENST00000597423 STAG3L1P0CL83 205 aa16.54■□□□□ 0.24
TRIM28-209ENST00000597423 DLATP10515 647 aaKnown RBP16.54■□□□□ 0.24
TRIM28-209ENST00000597423 SKIP12755 728 aa16.54■□□□□ 0.24
TRIM28-209ENST00000597423 TNNI1P19237 187 aa16.54■□□□□ 0.24
TRIM28-209ENST00000597423 PBX1P40424 430 aa16.54■□□□□ 0.24
TRIM28-209ENST00000597423 GRM5P41594 1212 aa16.54■□□□□ 0.24
TRIM28-209ENST00000597423 FMO5P49326 533 aa16.54■□□□□ 0.24
TRIM28-209ENST00000597423 MNX1P50219 401 aaPredicted RBP16.54■□□□□ 0.24
TRIM28-209ENST00000597423 SYCP1Q15431 976 aa16.54■□□□□ 0.24
TRIM28-209ENST00000597423 EXOC3L4Q17RC7 722 aa16.54■□□□□ 0.24
TRIM28-209ENST00000597423 FBXO47Q5MNV8 452 aa16.54■□□□□ 0.24
TRIM28-209ENST00000597423 TWF2Q6IBS0 349 aaKnown RBP16.54■□□□□ 0.24
TRIM28-209ENST00000597423 CRELD2Q6UXH1 353 aaPredicted RBP16.54■□□□□ 0.24
TRIM28-209ENST00000597423 FAM228AQ86W67 206 aa16.54■□□□□ 0.24
TRIM28-209ENST00000597423 ZNF397Q8NF99 534 aaPredicted RBP16.54■□□□□ 0.24
TRIM28-209ENST00000597423 CACTINQ8WUQ7 758 aaKnown RBP16.54■□□□□ 0.24
TRIM28-209ENST00000597423 TRIM44Q96DX7 344 aaPredicted RBP16.54■□□□□ 0.24
TRIM28-209ENST00000597423 TSPAN18Q96SJ8 248 aa16.54■□□□□ 0.24
TRIM28-209ENST00000597423 MMRN2Q9H8L6 949 aa16.54■□□□□ 0.24
TRIM28-209ENST00000597423 PLEKHA5Q9HAU0 1116 aa16.54■□□□□ 0.24
TRIM28-209ENST00000597423 TMEM8AQ9HCN3 771 aa16.54■□□□□ 0.24
TRIM28-209ENST00000597423 TOPORSQ9NS56 1045 aaPredicted RBP16.54■□□□□ 0.24
TRIM28-209ENST00000597423 NRDCO43847 1150 aa16.53■□□□□ 0.24
TRIM28-209ENST00000597423 NPTXRO95502 500 aa16.53■□□□□ 0.24
TRIM28-209ENST00000597423 ADRB2P07550 413 aa16.53■□□□□ 0.24
TRIM28-209ENST00000597423 TRIM49P0CI25 452 aa16.53■□□□□ 0.24
TRIM28-209ENST00000597423 TRIM49CP0CI26 452 aa16.53■□□□□ 0.24
TRIM28-209ENST00000597423 CLDN10P78369 228 aa16.53■□□□□ 0.24
TRIM28-209ENST00000597423 MYL7Q01449 175 aa16.53■□□□□ 0.24
TRIM28-209ENST00000597423 DUOXA2Q1HG44 320 aa16.53■□□□□ 0.24
TRIM28-209ENST00000597423 TSR1Q2NL82 804 aaKnown RBP16.53■□□□□ 0.24
TRIM28-209ENST00000597423 KRT39Q6A163 491 aa16.53■□□□□ 0.24
TRIM28-209ENST00000597423 LRRC8DQ7L1W4 858 aa16.53■□□□□ 0.24
TRIM28-209ENST00000597423 CDR2LQ86X02 465 aaPredicted RBP16.53■□□□□ 0.24
TRIM28-209ENST00000597423 ZSWIM2Q8NEG5 633 aa16.53■□□□□ 0.24
TRIM28-209ENST00000597423 NEK11Q8NG66 645 aa16.53■□□□□ 0.24
TRIM28-209ENST00000597423 FAM212AQ96EL1 285 aa16.53■□□□□ 0.24
TRIM28-209ENST00000597423 PAWRQ96IZ0 340 aaKnown RBP16.53■□□□□ 0.24
TRIM28-209ENST00000597423 EDEM3Q9BZQ6 932 aa16.53■□□□□ 0.24
TRIM28-209ENST00000597423 ASB7Q9H672 318 aa16.53■□□□□ 0.24
TRIM28-209ENST00000597423 ERVK-5Q9HDB9 667 aa16.53■□□□□ 0.24
TRIM28-209ENST00000597423 PADI3Q9ULW8 664 aa16.53■□□□□ 0.24
TRIM28-209ENST00000597423 DAAM1Q9Y4D1 1078 aa16.53■□□□□ 0.24
TRIM28-209ENST00000597423 FAM189A1O60320 539 aa16.52■□□□□ 0.24
TRIM28-209ENST00000597423 GHRP10912 638 aa16.52■□□□□ 0.24
TRIM28-209ENST00000597423 TRIM21P19474 475 aaKnown RBP16.52■□□□□ 0.24
TRIM28-209ENST00000597423 MXI1P50539 228 aa16.52■□□□□ 0.24
TRIM28-209ENST00000597423 OSTNP61366 133 aa16.52■□□□□ 0.24
TRIM28-209ENST00000597423 TLE2Q04725 743 aa16.52■□□□□ 0.24
TRIM28-209ENST00000597423 LPIN1Q14693 890 aa16.52■□□□□ 0.24
TRIM28-209ENST00000597423 FIGNQ5HY92 759 aa16.52■□□□□ 0.24
TRIM28-209ENST00000597423 NT5DC4Q86YG4 428 aa16.52■□□□□ 0.24
TRIM28-209ENST00000597423 WDR49Q8IV35 697 aa16.52■□□□□ 0.24
TRIM28-209ENST00000597423 CGRRF1Q99675 332 aa16.52■□□□□ 0.24
TRIM28-209ENST00000597423 FTHL17Q9BXU8 183 aa16.52■□□□□ 0.24
TRIM28-209ENST00000597423 PDE11AQ9HCR9 933 aa16.52■□□□□ 0.24
TRIM28-209ENST00000597423 R3HCC1Q9Y3T6 440 aaKnown RBP16.52■□□□□ 0.24
TRIM28-209ENST00000597423 CEP350Q5VT06 3117 aa16.51■□□□□ 0.23
TRIM28-209ENST00000597423 LRRIQ3A6PVS8 624 aaPredicted RBP16.51■□□□□ 0.23
TRIM28-209ENST00000597423 AKR1B15C9JRZ8 316 aaPredicted RBP16.51■□□□□ 0.23
TRIM28-209ENST00000597423 PHACTR2O75167 634 aa16.51■□□□□ 0.23
TRIM28-209ENST00000597423 TNNC2P02585 160 aa16.51■□□□□ 0.23
TRIM28-209ENST00000597423 CD52P31358 61 aa16.51■□□□□ 0.23
TRIM28-209ENST00000597423 TNFSF9P41273 254 aa16.51■□□□□ 0.23
TRIM28-209ENST00000597423 GCLMP48507 274 aa16.51■□□□□ 0.23
TRIM28-209ENST00000597423 RAB27AP51159 221 aa16.51■□□□□ 0.23
TRIM28-209ENST00000597423 DLG4P78352 724 aa16.51■□□□□ 0.23
TRIM28-209ENST00000597423 ENOX2Q16206 610 aaKnown RBP16.51■□□□□ 0.23
TRIM28-209ENST00000597423 TRIM60Q495X7 471 aa16.51■□□□□ 0.23
TRIM28-209ENST00000597423 SEZ6Q53EL9 994 aa16.51■□□□□ 0.23
TRIM28-209ENST00000597423 ZBTB41Q5SVQ8 909 aa16.51■□□□□ 0.23
TRIM28-209ENST00000597423 CCDC186Q7Z3E2 898 aa16.51■□□□□ 0.23
TRIM28-209ENST00000597423 CCDC150Q8NCX0 1101 aa16.51■□□□□ 0.23
TRIM28-209ENST00000597423 EHBP1Q8NDI1 1231 aa16.51■□□□□ 0.23
TRIM28-209ENST00000597423 PGBD4Q96DM1 585 aa16.51■□□□□ 0.23
TRIM28-209ENST00000597423 FAM81BQ96LP2 452 aa16.51■□□□□ 0.23
TRIM28-209ENST00000597423 TRAIPQ9BWF2 469 aa16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms