RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 NOLC1Q14978 699 aaKnown RBP eCLIP21.35■■□□□ 1.01
SS18-209ENST00000578595 GLRA4Q5JXX5 417 aa21.35■■□□□ 1.01
SS18-209ENST00000578595 VPS52Q8N1B4 723 aa21.35■■□□□ 1.01
SS18-209ENST00000578595 IQUBQ8NA54 791 aa21.35■■□□□ 1.01
SS18-209ENST00000578595 ZBTB45Q96K62 511 aaPredicted RBP21.35■■□□□ 1.01
SS18-209ENST00000578595 MRPL44Q9H9J2 332 aaKnown RBP21.35■■□□□ 1.01
SS18-209ENST00000578595 TOPORSQ9NS56 1045 aaPredicted RBP21.35■■□□□ 1.01
SS18-209ENST00000578595 ZMYM2Q9UBW7 1377 aa21.35■■□□□ 1.01
SS18-209ENST00000578595 POLR2DO15514 142 aaKnown RBP21.34■■□□□ 1.01
SS18-209ENST00000578595 MCF2P10911 925 aa21.34■■□□□ 1.01
SS18-209ENST00000578595 GAP43P17677 238 aa21.34■■□□□ 1.01
SS18-209ENST00000578595 NDUFV1P49821 464 aa21.34■■□□□ 1.01
SS18-209ENST00000578595 SMC1AQ14683 1233 aaKnown RBP21.34■■□□□ 1.01
SS18-209ENST00000578595 TJAP1Q5JTD0 557 aa21.34■■□□□ 1.01
SS18-209ENST00000578595 AXDND1Q5T1B0 1012 aaPredicted RBP21.34■■□□□ 1.01
SS18-209ENST00000578595 PDE12Q6L8Q7 609 aaKnown RBP21.34■■□□□ 1.01
SS18-209ENST00000578595 COLGALT2Q8IYK4 626 aa21.34■■□□□ 1.01
SS18-209ENST00000578595 BCL7CQ8WUZ0 217 aaPredicted RBP21.34■■□□□ 1.01
SS18-209ENST00000578595 LEO1Q8WVC0 666 aaPredicted RBP21.34■■□□□ 1.01
SS18-209ENST00000578595 LRRC27Q9C0I9 530 aa21.34■■□□□ 1.01
SS18-209ENST00000578595 RCOR1Q9UKL0 485 aa21.34■■□□□ 1.01
SS18-209ENST00000578595 TBX20Q9UMR3 447 aa21.34■■□□□ 1.01
SS18-209ENST00000578595 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP21.33■■□□□ 1.01
SS18-209ENST00000578595 CASTOR2A6NHX0 329 aa21.33■■□□□ 1.01
SS18-209ENST00000578595 H3BQ06 376 aaPredicted RBP21.33■■□□□ 1.01
SS18-209ENST00000578595 PER2O15055 1255 aa21.33■■□□□ 1.01
SS18-209ENST00000578595 INPPL1O15357 1258 aa21.33■■□□□ 1.01
SS18-209ENST00000578595 CLDN3O15551 220 aa21.33■■□□□ 1.01
SS18-209ENST00000578595 TOM1L1O75674 476 aa21.33■■□□□ 1.01
SS18-209ENST00000578595 THP07101 528 aa21.33■■□□□ 1.01
SS18-209ENST00000578595 GRM5P41594 1212 aa21.33■■□□□ 1.01
SS18-209ENST00000578595 KCNQ1P51787 676 aa21.33■■□□□ 1.01
SS18-209ENST00000578595 ZC2HC1CQ53FD0 456 aaPredicted RBP21.33■■□□□ 1.01
SS18-209ENST00000578595 ZPBP2Q6X784 338 aa21.33■■□□□ 1.01
SS18-209ENST00000578595 RABGGTAQ92696 567 aa21.33■■□□□ 1.01
SS18-209ENST00000578595 PABPC5Q96DU9 382 aaKnown RBP21.33■■□□□ 1.01
SS18-209ENST00000578595 ASB2Q96Q27 587 aa21.33■■□□□ 1.01
SS18-209ENST00000578595 TNMDQ9H2S6 317 aa21.33■■□□□ 1.01
SS18-209ENST00000578595 CUEDC2Q9H467 287 aa21.33■■□□□ 1.01
SS18-209ENST00000578595 NGRNQ9NPE2 291 aaKnown RBP21.33■■□□□ 1.01
SS18-209ENST00000578595 PANK4Q9NVE7 773 aa21.33■■□□□ 1.01
SS18-209ENST00000578595 CACNG4Q9UBN1 327 aa21.33■■□□□ 1.01
SS18-209ENST00000578595 CUL9Q8IWT3 2517 aa21.33■■□□□ 1
SS18-209ENST00000578595 UNC80Q8N2C7 3258 aa21.33■■□□□ 1
SS18-209ENST00000578595 NCOR1O75376 2440 aa21.32■■□□□ 1
SS18-209ENST00000578595 TULP1O00294 542 aaPredicted RBP21.32■■□□□ 1
SS18-209ENST00000578595 LINC01565O15544 149 aa21.32■■□□□ 1
SS18-209ENST00000578595 NCK2O43639 380 aa21.32■■□□□ 1
SS18-209ENST00000578595 GCNT3O95395 438 aa21.32■■□□□ 1
SS18-209ENST00000578595 SCP2P22307 547 aa21.32■■□□□ 1
SS18-209ENST00000578595 ABCD1P33897 745 aa21.32■■□□□ 1
SS18-209ENST00000578595 ASIC1P78348 528 aa21.32■■□□□ 1
SS18-209ENST00000578595 NUCB2P80303 420 aa21.32■■□□□ 1
SS18-209ENST00000578595 AMPD3Q01432 767 aa21.32■■□□□ 1
SS18-209ENST00000578595 TUSC3Q13454 348 aa21.32■■□□□ 1
SS18-209ENST00000578595 CLUL1Q15846 466 aa21.32■■□□□ 1
SS18-209ENST00000578595 SEZ6Q53EL9 994 aa21.32■■□□□ 1
SS18-209ENST00000578595 HERC4Q5GLZ8 1057 aaPredicted RBP21.32■■□□□ 1
SS18-209ENST00000578595 RESP18Q5W5W9 173 aa21.32■■□□□ 1
SS18-209ENST00000578595 CCDC65Q8IXS2 484 aa21.32■■□□□ 1
SS18-209ENST00000578595 AUTS2Q8WXX7 1259 aa21.32■■□□□ 1
SS18-209ENST00000578595 ACAP3Q96P50 834 aa21.32■■□□□ 1
SS18-209ENST00000578595 COLEC11Q9BWP8 271 aa21.32■■□□□ 1
SS18-209ENST00000578595 SEL1LQ9UBV2 794 aa21.32■■□□□ 1
SS18-209ENST00000578595 ANK1P16157 1881 aa21.32■■□□□ 1
SS18-209ENST00000578595 FSCN2O14926 492 aa21.31■■□□□ 1
SS18-209ENST00000578595 CXCL14O95715 111 aa21.31■■□□□ 1
SS18-209ENST00000578595 DSC1Q08554 894 aa21.31■■□□□ 1
SS18-209ENST00000578595 E2F4Q16254 413 aa21.31■■□□□ 1
SS18-209ENST00000578595 LLGL2Q6P1M3 1020 aa21.31■■□□□ 1
SS18-209ENST00000578595 DDX53Q86TM3 631 aaKnown RBP21.31■■□□□ 1
SS18-209ENST00000578595 CEP57L1Q8IYX8 460 aa21.31■■□□□ 1
SS18-209ENST00000578595 GSTCDQ8NEC7 633 aa21.31■■□□□ 1
SS18-209ENST00000578595 HASPINQ8TF76 798 aa21.31■■□□□ 1
SS18-209ENST00000578595 DNAJC19Q96DA6 116 aa21.31■■□□□ 1
SS18-209ENST00000578595 SCAND2PQ9GZW5 306 aaPredicted RBP21.31■■□□□ 1
SS18-209ENST00000578595 PTPRHQ9HD43 1115 aa21.31■■□□□ 1
SS18-209ENST00000578595 HIDE1A8MVS5 230 aa21.3■■□□□ 1
SS18-209ENST00000578595 C2CD2LO14523 706 aa21.3■■□□□ 1
SS18-209ENST00000578595 PTGESO14684 152 aa21.3■■□□□ 1
SS18-209ENST00000578595 PROZP22891 400 aa21.3■■□□□ 1
SS18-209ENST00000578595 AFMP43652 599 aa21.3■■□□□ 1
SS18-209ENST00000578595 PYM1Q9BRP8 204 aaKnown RBP21.3■■□□□ 1
SS18-209ENST00000578595 ZBP1Q9H171 429 aa21.3■■□□□ 1
SS18-209ENST00000578595 CXCL16Q9H2A7 254 aa21.3■■□□□ 1
SS18-209ENST00000578595 GDPD2Q9HCC8 539 aa21.3■■□□□ 1
SS18-209ENST00000578595 MARCH5Q9NX47 278 aa21.3■■□□□ 1
SS18-209ENST00000578595 KCNH3Q9ULD8 1083 aa21.3■■□□□ 1
SS18-209ENST00000578595 F8W810 466 aa21.29■■□□□ 1
SS18-209ENST00000578595 TADA2AO75478 443 aa21.29■■□□□ 1
SS18-209ENST00000578595 URODP06132 367 aa21.29■■□□□ 1
SS18-209ENST00000578595 SRGAP2BP0DMP2 458 aa21.29■■□□□ 1
SS18-209ENST00000578595 GTF2BQ00403 316 aa21.29■■□□□ 1
SS18-209ENST00000578595 HSP90AA2PQ14568 343 aaPredicted RBP21.29■■□□□ 1
SS18-209ENST00000578595 KIAA1841Q6NSI8 718 aa21.29■■□□□ 1
SS18-209ENST00000578595 MAP4K3Q8IVH8 894 aa21.29■■□□□ 1
SS18-209ENST00000578595 SYCP3Q8IZU3 236 aa21.29■■□□□ 1
SS18-209ENST00000578595 EFHBQ8N7U6 833 aa21.29■■□□□ 1
SS18-209ENST00000578595 FIZ1Q96SL8 496 aa21.29■■□□□ 1
SS18-209ENST00000578595 CDCA3Q99618 268 aaPredicted RBP21.29■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms