RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 SERINC2Q96SA4 455 aa7.06□□□□□ -1.28
VPS53-212ENST00000572259 G6PC3Q9BUM1 346 aa7.06□□□□□ -1.28
VPS53-212ENST00000572259 PHF20Q9BVI0 1012 aa7.06□□□□□ -1.28
VPS53-212ENST00000572259 TRIM8Q9BZR9 551 aa7.06□□□□□ -1.28
VPS53-212ENST00000572259 EBF1Q9UH73 591 aa7.06□□□□□ -1.28
VPS53-212ENST00000572259 A0A1W2PRQ8 180 aa7.05□□□□□ -1.28
VPS53-212ENST00000572259 WTIPA6NIX2 430 aaPredicted RBP7.05□□□□□ -1.28
VPS53-212ENST00000572259 YDJCA8MPS7 323 aa7.05□□□□□ -1.28
VPS53-212ENST00000572259 AQP7O14520 342 aa7.05□□□□□ -1.28
VPS53-212ENST00000572259 FRAT2O75474 233 aaPredicted RBP7.05□□□□□ -1.28
VPS53-212ENST00000572259 TAF5LO75529 589 aa7.05□□□□□ -1.28
VPS53-212ENST00000572259 RPN1P04843 607 aaKnown RBP7.05□□□□□ -1.28
VPS53-212ENST00000572259 RNASE1P07998 156 aaKnown RBP7.05□□□□□ -1.28
VPS53-212ENST00000572259 IFIT1P09914 478 aaKnown RBP7.05□□□□□ -1.28
VPS53-212ENST00000572259 POU3F2P20265 443 aaPredicted RBP7.05□□□□□ -1.28
VPS53-212ENST00000572259 GDNFP39905 211 aa7.05□□□□□ -1.28
VPS53-212ENST00000572259 EPS15P42566 896 aa7.05□□□□□ -1.28
VPS53-212ENST00000572259 RENBPP51606 427 aa7.05□□□□□ -1.28
VPS53-212ENST00000572259 RBM10P98175 930 aaKnown RBP7.05□□□□□ -1.28
VPS53-212ENST00000572259 TBX2Q13207 712 aaPredicted RBP7.05□□□□□ -1.28
VPS53-212ENST00000572259 TOMM20Q15388 145 aa7.05□□□□□ -1.28
VPS53-212ENST00000572259 ZNF792Q3KQV3 632 aa7.05□□□□□ -1.28
VPS53-212ENST00000572259 ARTNQ5T4W7 220 aa7.05□□□□□ -1.28
VPS53-212ENST00000572259 C1QTNF12Q5T7M4 302 aa7.05□□□□□ -1.28
VPS53-212ENST00000572259 GPR158Q5T848 1215 aa7.05□□□□□ -1.28
VPS53-212ENST00000572259 STRIP1Q5VSL9 837 aa7.05□□□□□ -1.28
VPS53-212ENST00000572259 GALNT18Q6P9A2 607 aa7.05□□□□□ -1.28
VPS53-212ENST00000572259 KCNT2Q6UVM3 1135 aa7.05□□□□□ -1.28
VPS53-212ENST00000572259 MTDHQ86UE4 582 aaKnown RBP7.05□□□□□ -1.28
VPS53-212ENST00000572259 RASSF3Q86WH2 238 aa7.05□□□□□ -1.28
VPS53-212ENST00000572259 ITPRIPQ8IWB1 547 aa7.05□□□□□ -1.28
VPS53-212ENST00000572259 CLASRPQ8N2M8 674 aaKnown RBP7.05□□□□□ -1.28
VPS53-212ENST00000572259 NKAPQ8N5F7 415 aaKnown RBP7.05□□□□□ -1.28
VPS53-212ENST00000572259 ANKRD44Q8N8A2 993 aa7.05□□□□□ -1.28
VPS53-212ENST00000572259 SECISBP2LQ93073 1101 aaKnown RBP7.05□□□□□ -1.28
VPS53-212ENST00000572259 KAZALD1Q96I82 304 aa7.05□□□□□ -1.28
VPS53-212ENST00000572259 CLUHP3Q96NS8 147 aa7.05□□□□□ -1.28
VPS53-212ENST00000572259 ZFYVE21Q9BQ24 234 aa7.05□□□□□ -1.28
VPS53-212ENST00000572259 LRRC27Q9C0I9 530 aa7.05□□□□□ -1.28
VPS53-212ENST00000572259 RC3H2Q9HBD1 1191 aaKnown RBP7.05□□□□□ -1.28
VPS53-212ENST00000572259 ZFP64Q9NPA5 681 aa7.05□□□□□ -1.28
VPS53-212ENST00000572259 MAN1C1Q9NR34 630 aa7.05□□□□□ -1.28
VPS53-212ENST00000572259 GPR27Q9NS67 375 aa7.05□□□□□ -1.28
VPS53-212ENST00000572259 MBNL3Q9NUK0 354 aaKnown RBP7.05□□□□□ -1.28
VPS53-212ENST00000572259 TRAF6Q9Y4K3 522 aa7.05□□□□□ -1.28
VPS53-212ENST00000572259 LRRFIP2Q9Y608 721 aaKnown RBP7.05□□□□□ -1.28
VPS53-212ENST00000572259 TAF6LQ9Y6J9 622 aa7.05□□□□□ -1.28
VPS53-212ENST00000572259 ABHD14A-ACY1A0A1B0GW23 586 aa7.04□□□□□ -1.28
VPS53-212ENST00000572259 A0A1W2PQJ5 194 aa7.04□□□□□ -1.28
VPS53-212ENST00000572259 C7orf72A4D263 438 aa7.04□□□□□ -1.28
VPS53-212ENST00000572259 EYA2O00167 538 aa7.04□□□□□ -1.28
VPS53-212ENST00000572259 CIAO1O76071 339 aa7.04□□□□□ -1.28
VPS53-212ENST00000572259 PDE8BO95263 885 aa7.04□□□□□ -1.28
VPS53-212ENST00000572259 C6orf222P0C671 652 aaPredicted RBP7.04□□□□□ -1.28
VPS53-212ENST00000572259 LCP1P13796 627 aa7.04□□□□□ -1.28
VPS53-212ENST00000572259 SLC5A1P13866 664 aa7.04□□□□□ -1.28
VPS53-212ENST00000572259 NAT1P18440 290 aa7.04□□□□□ -1.28
VPS53-212ENST00000572259 SDSP20132 328 aa7.04□□□□□ -1.28
VPS53-212ENST00000572259 HIBADHP31937 336 aaKnown RBP7.04□□□□□ -1.28
VPS53-212ENST00000572259 IL15P40933 162 aaPredicted RBP7.04□□□□□ -1.28
VPS53-212ENST00000572259 GTF2A2P52657 109 aa7.04□□□□□ -1.28
VPS53-212ENST00000572259 GP2P55259 537 aaKnown RBP7.04□□□□□ -1.28
VPS53-212ENST00000572259 GPR85P60893 370 aa7.04□□□□□ -1.28
VPS53-212ENST00000572259 RPL11P62913 178 aaKnown RBP7.04□□□□□ -1.28
VPS53-212ENST00000572259 TMPRSS15P98073 1019 aa7.04□□□□□ -1.28
VPS53-212ENST00000572259 G3BP1Q13283 466 aaKnown RBP eCLIP7.04□□□□□ -1.28
VPS53-212ENST00000572259 TESK1Q15569 626 aa7.04□□□□□ -1.28
VPS53-212ENST00000572259 ELF2Q15723 593 aa7.04□□□□□ -1.28
VPS53-212ENST00000572259 INF2Q27J81 1249 aa7.04□□□□□ -1.28
VPS53-212ENST00000572259 TBC1D10BQ4KMP7 808 aaPredicted RBP7.04□□□□□ -1.28
VPS53-212ENST00000572259 PKN3Q6P5Z2 889 aa7.04□□□□□ -1.28
VPS53-212ENST00000572259 LVRNQ6Q4G3 990 aa7.04□□□□□ -1.28
VPS53-212ENST00000572259 ANKRD23Q86SG2 305 aa7.04□□□□□ -1.28
VPS53-212ENST00000572259 CCDC103Q8IW40 242 aa7.04□□□□□ -1.28
VPS53-212ENST00000572259 CNTROBQ8N137 903 aa7.04□□□□□ -1.28
VPS53-212ENST00000572259 TMEM57Q8N5G2 664 aa7.04□□□□□ -1.28
VPS53-212ENST00000572259 CLIP3Q96DZ5 547 aa7.04□□□□□ -1.28
VPS53-212ENST00000572259 MAGEB10Q96LZ2 347 aaPredicted RBP7.04□□□□□ -1.28
VPS53-212ENST00000572259 TBATAQ96M53 351 aa7.04□□□□□ -1.28
VPS53-212ENST00000572259 JMJD8Q96S16 334 aa7.04□□□□□ -1.28
VPS53-212ENST00000572259 MEIS3Q99687 375 aa7.04□□□□□ -1.28
VPS53-212ENST00000572259 ALDH8A1Q9H2A2 487 aaPredicted RBP7.04□□□□□ -1.28
VPS53-212ENST00000572259 CD209Q9NNX6 404 aa7.04□□□□□ -1.28
VPS53-212ENST00000572259 ADAMTS6Q9UKP5 1117 aa7.04□□□□□ -1.28
VPS53-212ENST00000572259 DMTF1Q9Y222 760 aa7.04□□□□□ -1.28
VPS53-212ENST00000572259 ANKRD6Q9Y2G4 727 aa7.04□□□□□ -1.28
VPS53-212ENST00000572259 PCDHA2Q9Y5H9 948 aa7.04□□□□□ -1.28
VPS53-212ENST00000572259 TIMM13Q9Y5L4 95 aaPredicted RBP7.04□□□□□ -1.28
VPS53-212ENST00000572259 NPFFR2Q9Y5X5 522 aa7.04□□□□□ -1.28
VPS53-212ENST00000572259 SCN9AQ15858 1988 aa7.04□□□□□ -1.28
VPS53-212ENST00000572259 LTBP1Q14766 1721 aa7.04□□□□□ -1.28
VPS53-212ENST00000572259 PSME4Q14997 1843 aa7.04□□□□□ -1.28
VPS53-212ENST00000572259 DUOX1Q9NRD9 1551 aa7.03□□□□□ -1.28
VPS53-212ENST00000572259 ARNTLO00327 626 aa7.03□□□□□ -1.28
VPS53-212ENST00000572259 PMM2O15305 246 aa7.03□□□□□ -1.28
VPS53-212ENST00000572259 SRGAP3O43295 1099 aa7.03□□□□□ -1.28
VPS53-212ENST00000572259 ORC4O43929 436 aa7.03□□□□□ -1.28
VPS53-212ENST00000572259 DHX16O60231 1041 aaKnown RBP7.03□□□□□ -1.28
VPS53-212ENST00000572259 SASH1O94885 1247 aa7.03□□□□□ -1.28
VPS53-212ENST00000572259 RHOBTB3O94955 611 aa7.03□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms