RNA–Protein interactions for RNA: ENST00000567160.1

CLN3-226, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 616 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-226ENST00000567160 MIER3Q7Z3K6 550 aa12.55□□□□□ -0.4
CLN3-226ENST00000567160 BBXQ8WY36 941 aaPredicted RBP12.55□□□□□ -0.4
CLN3-226ENST00000567160 SMG7Q92540 1137 aaKnown RBP12.55□□□□□ -0.4
CLN3-226ENST00000567160 SCLT1Q96NL6 688 aa12.55□□□□□ -0.4
CLN3-226ENST00000567160 FAM126AQ9BYI3 521 aaPredicted RBP12.55□□□□□ -0.4
CLN3-226ENST00000567160 RAB34Q9BZG1 259 aa12.55□□□□□ -0.4
CLN3-226ENST00000567160 PIDD1Q9HB75 910 aa12.55□□□□□ -0.4
CLN3-226ENST00000567160 LRWD1Q9UFC0 647 aa12.55□□□□□ -0.4
CLN3-226ENST00000567160 SAMM50Q9Y512 469 aa12.55□□□□□ -0.4
CLN3-226ENST00000567160 MORC2Q9Y6X9 1032 aaPredicted RBP12.55□□□□□ -0.4
CLN3-226ENST00000567160 ZBTB42B2RXF5 422 aa12.54□□□□□ -0.4
CLN3-226ENST00000567160 ANHXE9PGG2 379 aa12.54□□□□□ -0.4
CLN3-226ENST00000567160 LILRB5O75023 590 aa12.54□□□□□ -0.4
CLN3-226ENST00000567160 LRP3O75074 770 aa12.54□□□□□ -0.4
CLN3-226ENST00000567160 PRPF40AO75400 957 aaKnown RBP12.54□□□□□ -0.4
CLN3-226ENST00000567160 SSBP05455 408 aaKnown RBP eCLIP12.54□□□□□ -0.4
CLN3-226ENST00000567160 CDC25AP30304 524 aa12.54□□□□□ -0.4
CLN3-226ENST00000567160 LONP1P36776 959 aaKnown RBP12.54□□□□□ -0.4
CLN3-226ENST00000567160 PRKCQQ04759 706 aa12.54□□□□□ -0.4
CLN3-226ENST00000567160 HTR4Q13639 388 aa12.54□□□□□ -0.4
CLN3-226ENST00000567160 UBXN2BQ14CS0 331 aa12.54□□□□□ -0.4
CLN3-226ENST00000567160 NOMO2Q5JPE7 1267 aa12.54□□□□□ -0.4
CLN3-226ENST00000567160 ZNF746Q6NUN9 644 aaPredicted RBP12.54□□□□□ -0.4
CLN3-226ENST00000567160 ABHD15Q6UXT9 468 aa12.54□□□□□ -0.4
CLN3-226ENST00000567160 IGSF22Q8N9C0 903 aa12.54□□□□□ -0.4
CLN3-226ENST00000567160 NRDE2Q9H7Z3 1164 aa12.54□□□□□ -0.4
CLN3-226ENST00000567160 CHST12Q9NRB3 414 aa12.54□□□□□ -0.4
CLN3-226ENST00000567160 RALYQ9UKM9 306 aaKnown RBP12.54□□□□□ -0.4
CLN3-226ENST00000567160 ZFP37Q9Y6Q3 630 aaPredicted RBP12.54□□□□□ -0.4
CLN3-226ENST00000567160 NUMBLQ9Y6R0 609 aa12.54□□□□□ -0.4
CLN3-226ENST00000567160 MYH11P35749 1972 aa12.54□□□□□ -0.4
CLN3-226ENST00000567160 GOLGA6L4A6NEF3 574 aa12.53□□□□□ -0.4
CLN3-226ENST00000567160 WDR64B1ANS9 1081 aa12.53□□□□□ -0.4
CLN3-226ENST00000567160 NCAM2O15394 837 aa12.53□□□□□ -0.4
CLN3-226ENST00000567160 GADD45BO75293 160 aaPredicted RBP12.53□□□□□ -0.4
CLN3-226ENST00000567160 LRRN2O75325 713 aa12.53□□□□□ -0.4
CLN3-226ENST00000567160 GLUD1P00367 558 aa12.53□□□□□ -0.4
CLN3-226ENST00000567160 URODP06132 367 aa12.53□□□□□ -0.4
CLN3-226ENST00000567160 TGM1P22735 817 aa12.53□□□□□ -0.4
CLN3-226ENST00000567160 CLCN3P51790 818 aa12.53□□□□□ -0.4
CLN3-226ENST00000567160 JAK3P52333 1124 aa12.53□□□□□ -0.4
CLN3-226ENST00000567160 PDIA5Q14554 519 aa12.53□□□□□ -0.4
CLN3-226ENST00000567160 ZRSR1Q15695 479 aaKnown RBP12.53□□□□□ -0.4
CLN3-226ENST00000567160 MLF2Q15773 248 aaPredicted RBP12.53□□□□□ -0.4
CLN3-226ENST00000567160 AXDND1Q5T1B0 1012 aaPredicted RBP12.53□□□□□ -0.4
CLN3-226ENST00000567160 B3GNT9Q6UX72 402 aa12.53□□□□□ -0.4
CLN3-226ENST00000567160 RSPO2Q6UXX9 243 aaPredicted RBP12.53□□□□□ -0.4
CLN3-226ENST00000567160 USP49Q70CQ1 688 aa12.53□□□□□ -0.4
CLN3-226ENST00000567160 GET4Q7L5D6 327 aaPredicted RBP12.53□□□□□ -0.4
CLN3-226ENST00000567160 CCDC60Q8IWA6 550 aaPredicted RBP12.53□□□□□ -0.4
CLN3-226ENST00000567160 SNX29Q8TEQ0 813 aa12.53□□□□□ -0.4
CLN3-226ENST00000567160 BCL7CQ8WUZ0 217 aaPredicted RBP12.53□□□□□ -0.4
CLN3-226ENST00000567160 GBP3Q9H0R5 595 aa12.53□□□□□ -0.4
CLN3-226ENST00000567160 ADAMTS10Q9H324 1103 aa12.53□□□□□ -0.4
CLN3-226ENST00000567160 PARD6AQ9NPB6 346 aa12.53□□□□□ -0.4
CLN3-226ENST00000567160 DISC1Q9NRI5 854 aa12.53□□□□□ -0.4
CLN3-226ENST00000567160 TBC1D13Q9NVG8 400 aa12.53□□□□□ -0.4
CLN3-226ENST00000567160 INPP5FQ9Y2H2 1132 aa12.53□□□□□ -0.4
CLN3-226ENST00000567160 MTCL1Q9Y4B5 1905 aaKnown RBP12.52□□□□□ -0.4
CLN3-226ENST00000567160 CNOT1A5YKK6 2376 aaKnown RBP12.52□□□□□ -0.4
CLN3-226ENST00000567160 RALGAPA1Q6GYQ0 2036 aa12.52□□□□□ -0.4
CLN3-226ENST00000567160 LOC105378220A0A1B0GUY1 285 aaPredicted RBP12.52□□□□□ -0.41
CLN3-226ENST00000567160 FAM170BA6NMN3 283 aa12.52□□□□□ -0.41
CLN3-226ENST00000567160 GOLGA6L22H0YM25 854 aa12.52□□□□□ -0.41
CLN3-226ENST00000567160 FOXD2O60548 495 aaPredicted RBP12.52□□□□□ -0.41
CLN3-226ENST00000567160 PSAPP07602 524 aa12.52□□□□□ -0.41
CLN3-226ENST00000567160 DARSP14868 501 aaKnown RBP12.52□□□□□ -0.41
CLN3-226ENST00000567160 KCNA4P22459 653 aa12.52□□□□□ -0.41
CLN3-226ENST00000567160 SFNP31947 248 aa12.52□□□□□ -0.41
CLN3-226ENST00000567160 CCT6AP40227 531 aaKnown RBP12.52□□□□□ -0.41
CLN3-226ENST00000567160 PHKA2P46019 1235 aa12.52□□□□□ -0.41
CLN3-226ENST00000567160 SLC11A1P49279 550 aa12.52□□□□□ -0.41
CLN3-226ENST00000567160 NRLP54845 237 aa12.52□□□□□ -0.41
CLN3-226ENST00000567160 PFKPQ01813 784 aa12.52□□□□□ -0.41
CLN3-226ENST00000567160 CYP4A11Q02928 519 aa12.52□□□□□ -0.41
CLN3-226ENST00000567160 SPEM2Q0P670 501 aa12.52□□□□□ -0.41
CLN3-226ENST00000567160 SNW1Q13573 536 aaKnown RBP12.52□□□□□ -0.41
CLN3-226ENST00000567160 EPHA7Q15375 998 aa12.52□□□□□ -0.41
CLN3-226ENST00000567160 ZBTB41Q5SVQ8 909 aa12.52□□□□□ -0.41
CLN3-226ENST00000567160 KRT79Q5XKE5 535 aa12.52□□□□□ -0.41
CLN3-226ENST00000567160 LAIR1Q6GTX8 287 aa12.52□□□□□ -0.41
CLN3-226ENST00000567160 SWSAP1Q6NVH7 229 aa12.52□□□□□ -0.41
CLN3-226ENST00000567160 EFCAB12Q6NXP0 572 aa12.52□□□□□ -0.41
CLN3-226ENST00000567160 SHC4Q6S5L8 630 aa12.52□□□□□ -0.41
CLN3-226ENST00000567160 SMAP1Q8IYB5 467 aaPredicted RBP12.52□□□□□ -0.41
CLN3-226ENST00000567160 RASSF8Q8NHQ8 419 aa12.52□□□□□ -0.41
CLN3-226ENST00000567160 ERMNQ8TAM6 284 aa12.52□□□□□ -0.41
CLN3-226ENST00000567160 URGCPQ8TCY9 931 aa12.52□□□□□ -0.41
CLN3-226ENST00000567160 HDAC7Q8WUI4 952 aa12.52□□□□□ -0.41
CLN3-226ENST00000567160 NELL1Q92832 810 aa12.52□□□□□ -0.41
CLN3-226ENST00000567160 DYDC2Q96IM9 177 aa12.52□□□□□ -0.41
CLN3-226ENST00000567160 EPSTI1Q96J88 318 aa12.52□□□□□ -0.41
CLN3-226ENST00000567160 PLIN2Q99541 437 aa12.52□□□□□ -0.41
CLN3-226ENST00000567160 EIF2AK1Q9BQI3 630 aaKnown RBP12.52□□□□□ -0.41
CLN3-226ENST00000567160 DDX23Q9BUQ8 820 aaKnown RBP12.52□□□□□ -0.41
CLN3-226ENST00000567160 TRAIPQ9BWF2 469 aa12.52□□□□□ -0.41
CLN3-226ENST00000567160 VN1R3Q9BXE9 311 aa12.52□□□□□ -0.41
CLN3-226ENST00000567160 RGL1Q9NZL6 768 aa12.52□□□□□ -0.41
CLN3-226ENST00000567160 PCDHA10Q9Y5I2 948 aa12.52□□□□□ -0.41
CLN3-226ENST00000567160 FASNP49327 2511 aaKnown RBP12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms