RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 MYCT1Q8N699 235 aa10.81□□□□□ -0.68
CLN3-220ENST00000566040 FSIP1Q8NA03 581 aa10.81□□□□□ -0.68
CLN3-220ENST00000566040 TMEM87AQ8NBN3 555 aa10.81□□□□□ -0.68
CLN3-220ENST00000566040 VN1R2Q8NFZ6 395 aa10.81□□□□□ -0.68
CLN3-220ENST00000566040 RASSF8Q8NHQ8 419 aa10.81□□□□□ -0.68
CLN3-220ENST00000566040 FEZF2Q8TBJ5 459 aa10.81□□□□□ -0.68
CLN3-220ENST00000566040 MRPL38Q96DV4 380 aaKnown RBP10.81□□□□□ -0.68
CLN3-220ENST00000566040 PAGE5Q96GU1 130 aa10.81□□□□□ -0.68
CLN3-220ENST00000566040 SNX27Q96L92 541 aa10.81□□□□□ -0.68
CLN3-220ENST00000566040 PPP1R10Q96QC0 940 aaKnown RBP10.81□□□□□ -0.68
CLN3-220ENST00000566040 APOL6Q9BWW8 343 aa10.81□□□□□ -0.68
CLN3-220ENST00000566040 MRPL4Q9BYD3 311 aaKnown RBP10.81□□□□□ -0.68
CLN3-220ENST00000566040 SCAND2PQ9GZW5 306 aaPredicted RBP10.81□□□□□ -0.68
CLN3-220ENST00000566040 TBC1D7Q9P0N9 293 aa10.81□□□□□ -0.68
CLN3-220ENST00000566040 LARSQ9P2J5 1176 aaKnown RBP10.81□□□□□ -0.68
CLN3-220ENST00000566040 GIT1Q9Y2X7 761 aa10.81□□□□□ -0.68
CLN3-220ENST00000566040 TTC28Q96AY4 2481 aa10.81□□□□□ -0.68
CLN3-220ENST00000566040 A0A0B4J269 797 aa10.8□□□□□ -0.68
CLN3-220ENST00000566040 TBCAO75347 108 aaKnown RBP10.8□□□□□ -0.68
CLN3-220ENST00000566040 TOM1L1O75674 476 aa10.8□□□□□ -0.68
CLN3-220ENST00000566040 FGF18O76093 207 aa10.8□□□□□ -0.68
CLN3-220ENST00000566040 MCF2P10911 925 aa10.8□□□□□ -0.68
CLN3-220ENST00000566040 LAG3P18627 525 aa10.8□□□□□ -0.68
CLN3-220ENST00000566040 PLCB3Q01970 1234 aa10.8□□□□□ -0.68
CLN3-220ENST00000566040 KCNC3Q14003 757 aa10.8□□□□□ -0.68
CLN3-220ENST00000566040 NOLC1Q14978 699 aaKnown RBP eCLIP10.8□□□□□ -0.68
CLN3-220ENST00000566040 SLC10A6Q3KNW5 377 aa10.8□□□□□ -0.68
CLN3-220ENST00000566040 DCAF4L1Q3SXM0 396 aa10.8□□□□□ -0.68
CLN3-220ENST00000566040 ZNF568Q3ZCX4 644 aa10.8□□□□□ -0.68
CLN3-220ENST00000566040 SCARA3Q6AZY7 606 aa10.8□□□□□ -0.68
CLN3-220ENST00000566040 GLB1LQ6UWU2 654 aa10.8□□□□□ -0.68
CLN3-220ENST00000566040 ZBTB33Q86T24 672 aa10.8□□□□□ -0.68
CLN3-220ENST00000566040 FAM178BQ8IXR5 827 aa10.8□□□□□ -0.68
CLN3-220ENST00000566040 IQUBQ8NA54 791 aa10.8□□□□□ -0.68
CLN3-220ENST00000566040 KIAA0895Q8NCT3 520 aa10.8□□□□□ -0.68
CLN3-220ENST00000566040 C3orf58Q8NDZ4 430 aa10.8□□□□□ -0.68
CLN3-220ENST00000566040 CNNM3Q8NE01 707 aa10.8□□□□□ -0.68
CLN3-220ENST00000566040 POF1BQ8WVV4 589 aa10.8□□□□□ -0.68
CLN3-220ENST00000566040 RABGGTAQ92696 567 aa10.8□□□□□ -0.68
CLN3-220ENST00000566040 PGBD4Q96DM1 585 aa10.8□□□□□ -0.68
CLN3-220ENST00000566040 LMCD1Q9NZU5 365 aa10.8□□□□□ -0.68
CLN3-220ENST00000566040 SEL1LQ9UBV2 794 aa10.8□□□□□ -0.68
CLN3-220ENST00000566040 GDAQ9Y2T3 454 aa10.8□□□□□ -0.68
CLN3-220ENST00000566040 NOTCH4Q99466 2003 aa10.8□□□□□ -0.68
CLN3-220ENST00000566040 TRIOO75962 3097 aa10.8□□□□□ -0.68
CLN3-220ENST00000566040 CUL9Q8IWT3 2517 aa10.8□□□□□ -0.68
CLN3-220ENST00000566040 TTC26A0AVF1 554 aa10.79□□□□□ -0.68
CLN3-220ENST00000566040 TGFB1I1O43294 461 aa10.79□□□□□ -0.68
CLN3-220ENST00000566040 ZC3H11AO75152 810 aaKnown RBP eCLIP10.79□□□□□ -0.68
CLN3-220ENST00000566040 GLP2RO95838 553 aa10.79□□□□□ -0.68
CLN3-220ENST00000566040 GAP43P17677 238 aa10.79□□□□□ -0.68
CLN3-220ENST00000566040 LTBRP36941 435 aa10.79□□□□□ -0.68
CLN3-220ENST00000566040 AFMP43652 599 aa10.79□□□□□ -0.68
CLN3-220ENST00000566040 RBM10P98175 930 aaKnown RBP10.79□□□□□ -0.68
CLN3-220ENST00000566040 HYAL1Q12794 435 aa10.79□□□□□ -0.68
CLN3-220ENST00000566040 DPYDQ12882 1025 aa10.79□□□□□ -0.68
CLN3-220ENST00000566040 ENOX2Q16206 610 aaKnown RBP10.79□□□□□ -0.68
CLN3-220ENST00000566040 TCEAL5Q5H9L2 206 aa10.79□□□□□ -0.68
CLN3-220ENST00000566040 GLRA4Q5JXX5 417 aa10.79□□□□□ -0.68
CLN3-220ENST00000566040 L1TD1Q5T7N2 865 aaKnown RBP10.79□□□□□ -0.68
CLN3-220ENST00000566040 KRBA2Q6ZNG9 492 aa10.79□□□□□ -0.68
CLN3-220ENST00000566040 UNC13DQ70J99 1090 aa10.79□□□□□ -0.68
CLN3-220ENST00000566040 TAS1R1Q7RTX1 841 aa10.79□□□□□ -0.68
CLN3-220ENST00000566040 MRPS27Q92552 414 aaKnown RBP10.79□□□□□ -0.68
CLN3-220ENST00000566040 IGSF21Q96ID5 467 aa10.79□□□□□ -0.68
CLN3-220ENST00000566040 FAM84AQ96KN4 292 aa10.79□□□□□ -0.68
CLN3-220ENST00000566040 ZNF558Q96NG5 402 aa10.79□□□□□ -0.68
CLN3-220ENST00000566040 GAS2L1Q99501 681 aaPredicted RBP10.79□□□□□ -0.68
CLN3-220ENST00000566040 C11orf84Q9BUA3 381 aaPredicted RBP10.79□□□□□ -0.68
CLN3-220ENST00000566040 MRPL9Q9BYD2 267 aaKnown RBP10.79□□□□□ -0.68
CLN3-220ENST00000566040 GZF1Q9H116 711 aaPredicted RBP10.79□□□□□ -0.68
CLN3-220ENST00000566040 ZBP1Q9H171 429 aa10.79□□□□□ -0.68
CLN3-220ENST00000566040 MAGEF1Q9HAY2 307 aa10.79□□□□□ -0.68
CLN3-220ENST00000566040 GOLGA2P5Q9HBQ8 144 aa10.79□□□□□ -0.68
CLN3-220ENST00000566040 PANK4Q9NVE7 773 aa10.79□□□□□ -0.68
CLN3-220ENST00000566040 CNTN3Q9P232 1028 aa10.79□□□□□ -0.68
CLN3-220ENST00000566040 ANKFY1Q9P2R3 1169 aa10.79□□□□□ -0.68
CLN3-220ENST00000566040 RWDD3Q9Y3V2 267 aa10.79□□□□□ -0.68
CLN3-220ENST00000566040 ATP6V1DQ9Y5K8 247 aa10.79□□□□□ -0.68
CLN3-220ENST00000566040 PTPRDP23468 1912 aa10.78□□□□□ -0.68
CLN3-220ENST00000566040 HIDE1A8MVS5 230 aa10.78□□□□□ -0.68
CLN3-220ENST00000566040 NRP1O14786 923 aa10.78□□□□□ -0.68
CLN3-220ENST00000566040 LINC01565O15544 149 aa10.78□□□□□ -0.68
CLN3-220ENST00000566040 LILRB3O75022 631 aa10.78□□□□□ -0.68
CLN3-220ENST00000566040 PRPF6O94906 941 aaKnown RBP10.78□□□□□ -0.68
CLN3-220ENST00000566040 CSPG5O95196 566 aa10.78□□□□□ -0.68
CLN3-220ENST00000566040 KRT18P05783 430 aaKnown RBP10.78□□□□□ -0.68
CLN3-220ENST00000566040 CXCL8P10145 99 aa10.78□□□□□ -0.68
CLN3-220ENST00000566040 IDEP14735 1019 aa10.78□□□□□ -0.68
CLN3-220ENST00000566040 IGFBP4P22692 258 aa10.78□□□□□ -0.68
CLN3-220ENST00000566040 SMTNP53814 917 aa10.78□□□□□ -0.68
CLN3-220ENST00000566040 OSTNP61366 133 aa10.78□□□□□ -0.68
CLN3-220ENST00000566040 ASIC1P78348 528 aa10.78□□□□□ -0.68
CLN3-220ENST00000566040 DLX2Q07687 328 aaPredicted RBP10.78□□□□□ -0.68
CLN3-220ENST00000566040 GRIK3Q13003 919 aa10.78□□□□□ -0.68
CLN3-220ENST00000566040 CCDC85BQ15834 202 aaPredicted RBP10.78□□□□□ -0.68
CLN3-220ENST00000566040 ZBTB6Q15916 424 aa10.78□□□□□ -0.68
CLN3-220ENST00000566040 BMT2Q1RMZ1 405 aa10.78□□□□□ -0.68
CLN3-220ENST00000566040 CTC1Q2NKJ3 1217 aa10.78□□□□□ -0.68
CLN3-220ENST00000566040 SCFD1Q8WVM8 642 aa10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms