RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 TLE2Q04725 743 aa13.93□□□□□ -0.18
CLK3-214ENST00000564096 LPIN1Q14693 890 aa13.93□□□□□ -0.18
CLK3-214ENST00000564096 PSMD6Q15008 389 aa13.93□□□□□ -0.18
CLK3-214ENST00000564096 APTXQ7Z2E3 356 aaKnown RBP13.93□□□□□ -0.18
CLK3-214ENST00000564096 DRC7Q8IY82 874 aa13.93□□□□□ -0.18
CLK3-214ENST00000564096 THNSL1Q8IYQ7 743 aa13.93□□□□□ -0.18
CLK3-214ENST00000564096 SLC35C1Q96A29 364 aa13.93□□□□□ -0.18
CLK3-214ENST00000564096 ZBTB45Q96K62 511 aaPredicted RBP13.93□□□□□ -0.18
CLK3-214ENST00000564096 RPF1Q9H9Y2 349 aaKnown RBP13.93□□□□□ -0.18
CLK3-214ENST00000564096 ERVK-5Q9HDB9 667 aa13.93□□□□□ -0.18
CLK3-214ENST00000564096 RTN4Q9NQC3 1192 aaKnown RBP13.93□□□□□ -0.18
CLK3-214ENST00000564096 TOPORSQ9NS56 1045 aaPredicted RBP13.93□□□□□ -0.18
CLK3-214ENST00000564096 TULP1O00294 542 aaPredicted RBP13.92□□□□□ -0.18
CLK3-214ENST00000564096 TPM1P09493 284 aa13.92□□□□□ -0.18
CLK3-214ENST00000564096 SKIP12755 728 aa13.92□□□□□ -0.18
CLK3-214ENST00000564096 HOXA11P31270 313 aaPredicted RBP13.92□□□□□ -0.18
CLK3-214ENST00000564096 CD52P31358 61 aa13.92□□□□□ -0.18
CLK3-214ENST00000564096 GTF2H1P32780 548 aa13.92□□□□□ -0.18
CLK3-214ENST00000564096 GRM5P41594 1212 aa13.92□□□□□ -0.18
CLK3-214ENST00000564096 ACOT2P49753 483 aa13.92□□□□□ -0.18
CLK3-214ENST00000564096 MXI1P50539 228 aa13.92□□□□□ -0.18
CLK3-214ENST00000564096 AP3M2P53677 418 aa13.92□□□□□ -0.18
CLK3-214ENST00000564096 MYL7Q01449 175 aa13.92□□□□□ -0.18
CLK3-214ENST00000564096 TRIM14Q14142 442 aa13.92□□□□□ -0.18
CLK3-214ENST00000564096 MIIPQ5JXC2 388 aa13.92□□□□□ -0.18
CLK3-214ENST00000564096 CDR2LQ86X02 465 aaPredicted RBP13.92□□□□□ -0.18
CLK3-214ENST00000564096 CD302Q8IX05 232 aa13.92□□□□□ -0.18
CLK3-214ENST00000564096 APBB2Q92870 758 aa13.92□□□□□ -0.18
CLK3-214ENST00000564096 CCDC127Q96BQ5 260 aa13.92□□□□□ -0.18
CLK3-214ENST00000564096 IQCDQ96DY2 449 aa13.92□□□□□ -0.18
CLK3-214ENST00000564096 MFSD14AQ96MC6 490 aa13.92□□□□□ -0.18
CLK3-214ENST00000564096 CGRRF1Q99675 332 aa13.92□□□□□ -0.18
CLK3-214ENST00000564096 FTHL17Q9BXU8 183 aa13.92□□□□□ -0.18
CLK3-214ENST00000564096 IFIH1Q9BYX4 1025 aaKnown RBP13.92□□□□□ -0.18
CLK3-214ENST00000564096 HAPLN2Q9GZV7 340 aa13.92□□□□□ -0.18
CLK3-214ENST00000564096 TMEM39AQ9NV64 488 aa13.92□□□□□ -0.18
CLK3-214ENST00000564096 CPSF3Q9UKF6 684 aaKnown RBP13.92□□□□□ -0.18
CLK3-214ENST00000564096 PADI3Q9ULW8 664 aa13.92□□□□□ -0.18
CLK3-214ENST00000564096 A0A1W2PQC6 194 aa13.91□□□□□ -0.18
CLK3-214ENST00000564096 GTPBP10A4D1E9 387 aaKnown RBP13.91□□□□□ -0.18
CLK3-214ENST00000564096 P4HA2O15460 535 aa13.91□□□□□ -0.18
CLK3-214ENST00000564096 FAM189A1O60320 539 aa13.91□□□□□ -0.18
CLK3-214ENST00000564096 TRIM49P0CI25 452 aa13.91□□□□□ -0.18
CLK3-214ENST00000564096 TRIM49CP0CI26 452 aa13.91□□□□□ -0.18
CLK3-214ENST00000564096 STAG3L1P0CL83 205 aa13.91□□□□□ -0.18
CLK3-214ENST00000564096 DLATP10515 647 aaKnown RBP13.91□□□□□ -0.18
CLK3-214ENST00000564096 RFC2P35250 354 aa13.91□□□□□ -0.18
CLK3-214ENST00000564096 FAAP100Q0VG06 881 aa13.91□□□□□ -0.18
CLK3-214ENST00000564096 KCNH2Q12809 1159 aa13.91□□□□□ -0.18
CLK3-214ENST00000564096 LRRC26Q2I0M4 334 aa13.91□□□□□ -0.18
CLK3-214ENST00000564096 TRAF7Q6Q0C0 670 aa13.91□□□□□ -0.18
CLK3-214ENST00000564096 WDR49Q8IV35 697 aa13.91□□□□□ -0.18
CLK3-214ENST00000564096 SEPT8Q92599 483 aa13.91□□□□□ -0.18
CLK3-214ENST00000564096 BORCS6Q96GS4 357 aa13.91□□□□□ -0.18
CLK3-214ENST00000564096 PCMTD1Q96MG8 357 aaPredicted RBP13.91□□□□□ -0.18
CLK3-214ENST00000564096 NAP1L5Q96NT1 182 aaPredicted RBP13.91□□□□□ -0.18
CLK3-214ENST00000564096 ACAP3Q96P50 834 aa13.91□□□□□ -0.18
CLK3-214ENST00000564096 TBX21Q9UL17 535 aa13.91□□□□□ -0.18
CLK3-214ENST00000564096 TANC1Q9C0D5 1861 aa13.91□□□□□ -0.18
CLK3-214ENST00000564096 ITIH6Q6UXX5 1313 aa13.9□□□□□ -0.18
CLK3-214ENST00000564096 CENPFP49454 3210 aa13.9□□□□□ -0.18
CLK3-214ENST00000564096 AP5Z1O43299 807 aa13.9□□□□□ -0.18
CLK3-214ENST00000564096 CXCL8P10145 99 aa13.9□□□□□ -0.18
CLK3-214ENST00000564096 TNNI1P19237 187 aa13.9□□□□□ -0.18
CLK3-214ENST00000564096 FMO5P49326 533 aa13.9□□□□□ -0.18
CLK3-214ENST00000564096 OSTNP61366 133 aa13.9□□□□□ -0.18
CLK3-214ENST00000564096 NR1I3Q14994 352 aa13.9□□□□□ -0.18
CLK3-214ENST00000564096 ZBTB41Q5SVQ8 909 aa13.9□□□□□ -0.18
CLK3-214ENST00000564096 SPECC1LQ69YQ0 1117 aa13.9□□□□□ -0.18
CLK3-214ENST00000564096 NT5DC4Q86YG4 428 aa13.9□□□□□ -0.18
CLK3-214ENST00000564096 VSTM4Q8IW00 320 aa13.9□□□□□ -0.18
CLK3-214ENST00000564096 PARD3BQ8TEW8 1205 aa13.9□□□□□ -0.18
CLK3-214ENST00000564096 EIF2AQ9BY44 585 aaKnown RBP13.9□□□□□ -0.18
CLK3-214ENST00000564096 PPP1R12CQ9BZL4 782 aa13.9□□□□□ -0.18
CLK3-214ENST00000564096 ASB7Q9H672 318 aa13.9□□□□□ -0.18
CLK3-214ENST00000564096 AGO3Q9H9G7 860 aaKnown RBP13.9□□□□□ -0.18
CLK3-214ENST00000564096 PLEKHA5Q9HAU0 1116 aa13.9□□□□□ -0.18
CLK3-214ENST00000564096 TMEM8AQ9HCN3 771 aa13.9□□□□□ -0.18
CLK3-214ENST00000564096 PRDM5Q9NQX1 630 aaPredicted RBP13.9□□□□□ -0.18
CLK3-214ENST00000564096 C1orf112Q9NSG2 853 aa13.9□□□□□ -0.18
CLK3-214ENST00000564096 FAM105AQ9NUU6 356 aa13.9□□□□□ -0.18
CLK3-214ENST00000564096 INTS13Q9NVM9 706 aa13.9□□□□□ -0.18
CLK3-214ENST00000564096 PRKAG2Q9UGJ0 569 aa13.9□□□□□ -0.18
CLK3-214ENST00000564096 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.9□□□□□ -0.183e-7■■■□□ 15.1
CLK3-214ENST00000564096 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.9□□□□□ -0.18
CLK3-214ENST00000564096 TRIP12Q14669 1992 aaPredicted RBP13.89□□□□□ -0.19
CLK3-214ENST00000564096 LRRIQ3A6PVS8 624 aaPredicted RBP13.89□□□□□ -0.19
CLK3-214ENST00000564096 TMEM191BP0C7N4 346 aa13.89□□□□□ -0.19
CLK3-214ENST00000564096 TNFSF9P41273 254 aa13.89□□□□□ -0.19
CLK3-214ENST00000564096 ENOX2Q16206 610 aaKnown RBP13.89□□□□□ -0.19
CLK3-214ENST00000564096 KRT39Q6A163 491 aa13.89□□□□□ -0.19
CLK3-214ENST00000564096 CRELD2Q6UXH1 353 aaPredicted RBP13.89□□□□□ -0.19
CLK3-214ENST00000564096 GBP6Q6ZN66 633 aa13.89□□□□□ -0.19
CLK3-214ENST00000564096 TMC6Q7Z403 805 aa13.89□□□□□ -0.19
CLK3-214ENST00000564096 CEP120Q8N960 986 aa13.89□□□□□ -0.19
CLK3-214ENST00000564096 ZSWIM2Q8NEG5 633 aa13.89□□□□□ -0.19
CLK3-214ENST00000564096 PGBD4Q96DM1 585 aa13.89□□□□□ -0.19
CLK3-214ENST00000564096 FAM212AQ96EL1 285 aa13.89□□□□□ -0.19
CLK3-214ENST00000564096 ANKRD36BP1Q96IX9 119 aa13.89□□□□□ -0.19
CLK3-214ENST00000564096 ERGIC2Q96RQ1 377 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms