RNA–Protein interactions for RNA: ENST00000560435.1

SPG11-222, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 413 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-222	ENST00000560435	LRIT1	Q9P2V4	623 aa		4.26	□□□□□ -1.73
SPG11-222	ENST00000560435	DRGX	A6NNA5	263 aa		4.25	□□□□□ -1.73
SPG11-222	ENST00000560435	ITGA10	O75578	1167 aa		4.25	□□□□□ -1.73
SPG11-222	ENST00000560435	ELANE	P08246	267 aa		4.25	□□□□□ -1.73
SPG11-222	ENST00000560435	ATP2A2	P16615	1042 aa	Known RBP	4.25	□□□□□ -1.73
SPG11-222	ENST00000560435	MRPS35	P82673	323 aa	Known RBP	4.25	□□□□□ -1.73
SPG11-222	ENST00000560435	B3GNTL1	Q67FW5	361 aa	Predicted RBP	4.25	□□□□□ -1.73
SPG11-222	ENST00000560435	PDZD4	Q76G19	769 aa	Predicted RBP	4.25	□□□□□ -1.73
SPG11-222	ENST00000560435	MAPKAPK5	Q8IW41	473 aa		4.25	□□□□□ -1.73
SPG11-222	ENST00000560435	TMEM132C	Q8N3T6	1108 aa		4.25	□□□□□ -1.73
SPG11-222	ENST00000560435	CEP95	Q96GE4	821 aa		4.25	□□□□□ -1.73
SPG11-222	ENST00000560435	ZNF496	Q96IT1	587 aa	Predicted RBP	4.25	□□□□□ -1.73
SPG11-222	ENST00000560435	ORAI3	Q9BRQ5	295 aa		4.25	□□□□□ -1.73
SPG11-222	ENST00000560435	KLHL11	Q9NVR0	708 aa		4.25	□□□□□ -1.73
SPG11-222	ENST00000560435	ZNF70	Q9UC06	446 aa	Predicted RBP	4.25	□□□□□ -1.73
SPG11-222	ENST00000560435	MSRA	Q9UJ68	235 aa		4.25	□□□□□ -1.73
SPG11-222	ENST00000560435	NOX1	Q9Y5S8	564 aa		4.25	□□□□□ -1.73
SPG11-222	ENST00000560435	PJA2	O43164	708 aa		4.24	□□□□□ -1.73
SPG11-222	ENST00000560435	PRAMEF4	O60810	478 aa		4.24	□□□□□ -1.73
SPG11-222	ENST00000560435	GAST	P01350	101 aa		4.24	□□□□□ -1.73
SPG11-222	ENST00000560435	JMJD7	P0C870	316 aa		4.24	□□□□□ -1.73
SPG11-222	ENST00000560435	PROK1	P58294	105 aa		4.24	□□□□□ -1.73
SPG11-222	ENST00000560435	PPARA	Q07869	468 aa		4.24	□□□□□ -1.73
SPG11-222	ENST00000560435	PASD1	Q8IV76	773 aa		4.24	□□□□□ -1.73
SPG11-222	ENST00000560435	MDM1	Q8TC05	714 aa		4.24	□□□□□ -1.73
SPG11-222	ENST00000560435	ACTRT2	Q8TDY3	377 aa		4.24	□□□□□ -1.73
SPG11-222	ENST00000560435	SNX33	Q8WV41	574 aa		4.24	□□□□□ -1.73
SPG11-222	ENST00000560435	MKL1	Q969V6	931 aa		4.24	□□□□□ -1.73
SPG11-222	ENST00000560435	SRPK1	Q96SB4	655 aa	Known RBP	4.24	□□□□□ -1.73
SPG11-222	ENST00000560435	TMEM74B	Q9NUR3	256 aa		4.24	□□□□□ -1.73
SPG11-222	ENST00000560435	TBCCD1	Q9NVR7	557 aa		4.24	□□□□□ -1.73
SPG11-222	ENST00000560435	GPRC5D	Q9NZD1	345 aa		4.24	□□□□□ -1.73
SPG11-222	ENST00000560435	ARPP21	Q9UBL0	812 aa	Predicted RBP	4.24	□□□□□ -1.73
SPG11-222	ENST00000560435	ZKSCAN5	Q9Y2L8	839 aa		4.24	□□□□□ -1.73
SPG11-222	ENST00000560435	NUMBL	Q9Y6R0	609 aa		4.24	□□□□□ -1.73
SPG11-222	ENST00000560435	TMEM127	O75204	238 aa		4.23	□□□□□ -1.73
SPG11-222	ENST00000560435	RBM25	P49756	843 aa	Known RBP	4.23	□□□□□ -1.73
SPG11-222	ENST00000560435	FLT3LG	P49771	235 aa		4.23	□□□□□ -1.73
SPG11-222	ENST00000560435	OCA2	Q04671	838 aa		4.23	□□□□□ -1.73
SPG11-222	ENST00000560435	CFAP100	Q494V2	611 aa		4.23	□□□□□ -1.73
SPG11-222	ENST00000560435	MFSD14B	Q5SR56	506 aa		4.23	□□□□□ -1.73
SPG11-222	ENST00000560435	ATXN7L2	Q5T6C5	722 aa	Predicted RBP	4.23	□□□□□ -1.73
SPG11-222	ENST00000560435	GPR158	Q5T848	1215 aa		4.23	□□□□□ -1.73
SPG11-222	ENST00000560435	KRTAP5-11	Q6L8G4	156 aa		4.23	□□□□□ -1.73
SPG11-222	ENST00000560435	ZNF788	Q6ZQV5	615 aa		4.23	□□□□□ -1.73
SPG11-222	ENST00000560435	RSAD2	Q8WXG1	361 aa		4.23	□□□□□ -1.73
SPG11-222	ENST00000560435	ARMC5	Q96C12	935 aa		4.23	□□□□□ -1.73
SPG11-222	ENST00000560435	BOD1	Q96IK1	185 aa		4.23	□□□□□ -1.73
SPG11-222	ENST00000560435	BRIP1	Q9BX63	1249 aa		4.23	□□□□□ -1.73
SPG11-222	ENST00000560435	TANGO6	Q9C0B7	1094 aa		4.23	□□□□□ -1.73
SPG11-222	ENST00000560435	WNT8A	Q9H1J5	351 aa		4.23	□□□□□ -1.73
SPG11-222	ENST00000560435	CASS4	Q9NQ75	786 aa		4.23	□□□□□ -1.73
SPG11-222	ENST00000560435	EVL	Q9UI08	416 aa	Predicted RBP	4.23	□□□□□ -1.73
SPG11-222	ENST00000560435	PRSS38	A1L453	326 aa		4.22	□□□□□ -1.73
SPG11-222	ENST00000560435	GAS7	O60861	476 aa		4.22	□□□□□ -1.73
SPG11-222	ENST00000560435	CRHR1	P34998	444 aa		4.22	□□□□□ -1.73
SPG11-222	ENST00000560435	CLRN1	P58418	232 aa		4.22	□□□□□ -1.73
SPG11-222	ENST00000560435	NAALADL2	Q58DX5	795 aa		4.22	□□□□□ -1.73
SPG11-222	ENST00000560435	PRAMEF14	Q5SWL7	426 aa		4.22	□□□□□ -1.73
SPG11-222	ENST00000560435	ZNF425	Q6IV72	752 aa		4.22	□□□□□ -1.73
SPG11-222	ENST00000560435	ABHD15	Q6UXT9	468 aa		4.22	□□□□□ -1.73
SPG11-222	ENST00000560435	PTF1A	Q7RTS3	328 aa		4.22	□□□□□ -1.73
SPG11-222	ENST00000560435	KIF18B	Q86Y91	864 aa		4.22	□□□□□ -1.73
SPG11-222	ENST00000560435	ZNF428	Q96B54	188 aa		4.22	□□□□□ -1.73
SPG11-222	ENST00000560435	RNF31	Q96EP0	1072 aa		4.22	□□□□□ -1.73
SPG11-222	ENST00000560435	PHACTR3	Q96KR7	559 aa		4.22	□□□□□ -1.73
SPG11-222	ENST00000560435	HEPH	Q9BQS7	1158 aa		4.22	□□□□□ -1.73
SPG11-222	ENST00000560435	AIFM2	Q9BRQ8	373 aa		4.22	□□□□□ -1.73
SPG11-222	ENST00000560435	GALNT9	Q9HCQ5	603 aa		4.22	□□□□□ -1.73
SPG11-222	ENST00000560435	IFT57	Q9NWB7	429 aa		4.22	□□□□□ -1.73
SPG11-222	ENST00000560435	PRSS50	Q9UI38	385 aa		4.22	□□□□□ -1.73
SPG11-222	ENST00000560435	TMPRSS11E	Q9UL52	423 aa		4.22	□□□□□ -1.73
SPG11-222	ENST00000560435	WIPF3	A6NGB9	483 aa		4.21	□□□□□ -1.74
SPG11-222	ENST00000560435	TGM5	O43548	720 aa		4.21	□□□□□ -1.74
SPG11-222	ENST00000560435	F2	P00734	622 aa		4.21	□□□□□ -1.74
SPG11-222	ENST00000560435	HOXB6	P17509	224 aa	Known RBP	4.21	□□□□□ -1.74
SPG11-222	ENST00000560435	SDS	P20132	328 aa		4.21	□□□□□ -1.74
SPG11-222	ENST00000560435	GTF2F1	P35269	517 aa	Known RBP eCLIP	4.21	□□□□□ -1.74
SPG11-222	ENST00000560435	KRTAP10-6	P60371	365 aa	Predicted RBP	4.21	□□□□□ -1.74
SPG11-222	ENST00000560435	CXADR	P78310	365 aa		4.21	□□□□□ -1.74
SPG11-222	ENST00000560435	RBL2	Q08999	1139 aa		4.21	□□□□□ -1.74
SPG11-222	ENST00000560435	KIAA1614	Q5VZ46	1190 aa		4.21	□□□□□ -1.74
SPG11-222	ENST00000560435	TSHZ3	Q63HK5	1081 aa		4.21	□□□□□ -1.74
SPG11-222	ENST00000560435	LYSMD2	Q8IV50	215 aa		4.21	□□□□□ -1.74
SPG11-222	ENST00000560435	SLC41A1	Q8IVJ1	513 aa		4.21	□□□□□ -1.74
SPG11-222	ENST00000560435	FAM43A	Q8N2R8	423 aa		4.21	□□□□□ -1.74
SPG11-222	ENST00000560435	SLC35B2	Q8TB61	432 aa		4.21	□□□□□ -1.74
SPG11-222	ENST00000560435	ZNF480	Q8WV37	535 aa		4.21	□□□□□ -1.74
SPG11-222	ENST00000560435	FUBP3	Q96I24	572 aa	Known RBP eCLIP	4.21	□□□□□ -1.74
SPG11-222	ENST00000560435	UROC1	Q96N76	676 aa		4.21	□□□□□ -1.74
SPG11-222	ENST00000560435	REXO4	Q9GZR2	422 aa	Known RBP	4.21	□□□□□ -1.74
SPG11-222	ENST00000560435	RNPEP	Q9H4A4	650 aa		4.21	□□□□□ -1.74
SPG11-222	ENST00000560435	IGSF5	Q9NSI5	407 aa		4.21	□□□□□ -1.74
SPG11-222	ENST00000560435	ASB6	Q9NWX5	421 aa		4.21	□□□□□ -1.74
SPG11-222	ENST00000560435	PPP2R3B	Q9Y5P8	575 aa		4.21	□□□□□ -1.74
SPG11-222	ENST00000560435		A0A1B0GTW7	788 aa		4.2	□□□□□ -1.74
SPG11-222	ENST00000560435	WDR91	A4D1P6	747 aa		4.2	□□□□□ -1.74
SPG11-222	ENST00000560435	CXorf49	A8MYA2	514 aa	Predicted RBP	4.2	□□□□□ -1.74
SPG11-222	ENST00000560435	SNRPA1	P09661	255 aa	Known RBP	4.2	□□□□□ -1.74
SPG11-222	ENST00000560435	PHC1	P78364	1004 aa		4.2	□□□□□ -1.74

Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms