RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 PRDM12Q9H4Q4 367 aa6.53□□□□□ -1.36
VPS13C-208ENST00000559119 ADARB2Q9NS39 739 aaKnown RBP6.53□□□□□ -1.36
VPS13C-208ENST00000559119 RNF181Q9P0P0 153 aa6.53□□□□□ -1.36
VPS13C-208ENST00000559119 MAP3K2Q9Y2U5 619 aa6.53□□□□□ -1.36
VPS13C-208ENST00000559119 EPN1Q9Y6I3 576 aaPredicted RBP6.53□□□□□ -1.36
VPS13C-208ENST00000559119 CRHR1P34998 444 aa6.52□□□□□ -1.37
VPS13C-208ENST00000559119 IL12RB1P42701 662 aa6.52□□□□□ -1.37
VPS13C-208ENST00000559119 SEC24CP53992 1094 aa6.52□□□□□ -1.37
VPS13C-208ENST00000559119 RESTQ13127 1097 aa6.52□□□□□ -1.37
VPS13C-208ENST00000559119 TP53BP2Q13625 1128 aa6.52□□□□□ -1.37
VPS13C-208ENST00000559119 ATP13A4Q4VNC1 1196 aa6.52□□□□□ -1.37
VPS13C-208ENST00000559119 DALRD3Q5D0E6 543 aaKnown RBP6.52□□□□□ -1.37
VPS13C-208ENST00000559119 PRAMEF14Q5SWL7 426 aa6.52□□□□□ -1.37
VPS13C-208ENST00000559119 FAM102AQ5T9C2 384 aaPredicted RBP6.52□□□□□ -1.37
VPS13C-208ENST00000559119 ABHD17BQ5VST6 288 aa6.52□□□□□ -1.37
VPS13C-208ENST00000559119 LEO1Q8WVC0 666 aaPredicted RBP6.52□□□□□ -1.37
VPS13C-208ENST00000559119 PHACTR3Q96KR7 559 aa6.52□□□□□ -1.37
VPS13C-208ENST00000559119 RPTORQ8N122 1335 aa6.51□□□□□ -1.37
VPS13C-208ENST00000559119 PHF2O75151 1096 aa6.51□□□□□ -1.37
VPS13C-208ENST00000559119 CXCR5P32302 372 aa6.51□□□□□ -1.37
VPS13C-208ENST00000559119 CLK3P49761 638 aaKnown RBP6.51□□□□□ -1.37
VPS13C-208ENST00000559119 FLT3LGP49771 235 aa6.51□□□□□ -1.37
VPS13C-208ENST00000559119 C21orf58P58505 322 aa6.51□□□□□ -1.37
VPS13C-208ENST00000559119 UGT8Q16880 541 aa6.51□□□□□ -1.37
VPS13C-208ENST00000559119 MFSD14BQ5SR56 506 aa6.51□□□□□ -1.37
VPS13C-208ENST00000559119 ARMC6Q6NXE6 501 aa6.51□□□□□ -1.37
VPS13C-208ENST00000559119 RD3Q7Z3Z2 195 aa6.51□□□□□ -1.37
VPS13C-208ENST00000559119 NTN5Q8WTR8 489 aaPredicted RBP6.51□□□□□ -1.37
VPS13C-208ENST00000559119 ATP11BQ9Y2G3 1177 aa6.51□□□□□ -1.37
VPS13C-208ENST00000559119 INSL6Q9Y581 213 aa6.51□□□□□ -1.37
VPS13C-208ENST00000559119 SPATA31A6Q5VVP1 1343 aa6.5□□□□□ -1.37
VPS13C-208ENST00000559119 PTPN7P35236 360 aa6.5□□□□□ -1.37
VPS13C-208ENST00000559119 CHN2P52757 468 aa6.5□□□□□ -1.37
VPS13C-208ENST00000559119 ATXN7L2Q5T6C5 722 aaPredicted RBP6.5□□□□□ -1.37
VPS13C-208ENST00000559119 USP7Q93009 1102 aa6.5□□□□□ -1.37
VPS13C-208ENST00000559119 EAF2Q96CJ1 260 aaPredicted RBP6.5□□□□□ -1.37
VPS13C-208ENST00000559119 ADAM2Q99965 735 aa6.5□□□□□ -1.37
VPS13C-208ENST00000559119 COX11Q9Y6N1 276 aa6.5□□□□□ -1.37
VPS13C-208ENST00000559119 DRGXA6NNA5 263 aa6.49□□□□□ -1.37
VPS13C-208ENST00000559119 PJA2O43164 708 aa6.49□□□□□ -1.37
VPS13C-208ENST00000559119 SPDEFO95238 335 aa6.49□□□□□ -1.37
VPS13C-208ENST00000559119 FOSP01100 380 aaPredicted RBP6.49□□□□□ -1.37
VPS13C-208ENST00000559119 ITGAMP11215 1152 aa6.49□□□□□ -1.37
VPS13C-208ENST00000559119 CLRN1P58418 232 aa6.49□□□□□ -1.37
VPS13C-208ENST00000559119 FOXI1Q12951 378 aa6.49□□□□□ -1.37
VPS13C-208ENST00000559119 SPDYE7PQ495Y7 208 aa6.49□□□□□ -1.37
VPS13C-208ENST00000559119 PRR16Q569H4 304 aa6.49□□□□□ -1.37
VPS13C-208ENST00000559119 FAM47AQ5JRC9 791 aa6.49□□□□□ -1.37
VPS13C-208ENST00000559119 ASB10Q8WXI3 467 aa6.49□□□□□ -1.37
VPS13C-208ENST00000559119 RSAD1Q9HA92 442 aa6.49□□□□□ -1.37
VPS13C-208ENST00000559119 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP6.48□□□□□ -1.37
VPS13C-208ENST00000559119 GSG1L2A8MUP6 293 aa6.48□□□□□ -1.37
VPS13C-208ENST00000559119 AKR1B10O60218 316 aa6.48□□□□□ -1.37
VPS13C-208ENST00000559119 CDKL5O76039 1030 aa6.48□□□□□ -1.37
VPS13C-208ENST00000559119 CFIP05156 583 aa6.48□□□□□ -1.37
VPS13C-208ENST00000559119 SNRPA1P09661 255 aaKnown RBP6.48□□□□□ -1.37
VPS13C-208ENST00000559119 EGR2P11161 476 aaPredicted RBP6.48□□□□□ -1.37
VPS13C-208ENST00000559119 TYRP1P17643 537 aa6.48□□□□□ -1.37
VPS13C-208ENST00000559119 MPP3Q13368 585 aa6.48□□□□□ -1.37
VPS13C-208ENST00000559119 PDCD1Q15116 288 aa6.48□□□□□ -1.37
VPS13C-208ENST00000559119 FSCN1Q16658 493 aaKnown RBP6.48□□□□□ -1.37
VPS13C-208ENST00000559119 METRNLQ641Q3 311 aa6.48□□□□□ -1.37
VPS13C-208ENST00000559119 FBXO42Q6P3S6 717 aa6.48□□□□□ -1.37
VPS13C-208ENST00000559119 SLC35B2Q8TB61 432 aa6.48□□□□□ -1.37
VPS13C-208ENST00000559119 NELL1Q92832 810 aa6.48□□□□□ -1.37
VPS13C-208ENST00000559119 RAX2Q96IS3 184 aa6.48□□□□□ -1.37
VPS13C-208ENST00000559119 ACAP3Q96P50 834 aa6.48□□□□□ -1.37
VPS13C-208ENST00000559119 REXO4Q9GZR2 422 aaKnown RBP6.48□□□□□ -1.37
VPS13C-208ENST00000559119 R3HDMLQ9H3Y0 253 aa6.48□□□□□ -1.37
VPS13C-208ENST00000559119 TESQ9UGI8 421 aaKnown RBP6.48□□□□□ -1.37
VPS13C-208ENST00000559119 DPP7Q9UHL4 492 aa6.48□□□□□ -1.37
VPS13C-208ENST00000559119 EDARQ9UNE0 448 aa6.48□□□□□ -1.37
VPS13C-208ENST00000559119 MRPL42Q9Y6G3 142 aaKnown RBP6.48□□□□□ -1.37
VPS13C-208ENST00000559119 MARCH11A6NNE9 402 aa6.47□□□□□ -1.37
VPS13C-208ENST00000559119 CXorf49A8MYA2 514 aaPredicted RBP6.47□□□□□ -1.37
VPS13C-208ENST00000559119 ADCY6O43306 1168 aa6.47□□□□□ -1.37
VPS13C-208ENST00000559119 PDE8AO60658 829 aa6.47□□□□□ -1.37
VPS13C-208ENST00000559119 ESRRBO95718 433 aa6.47□□□□□ -1.37
VPS13C-208ENST00000559119 ZNF37AP17032 561 aaPredicted RBP6.47□□□□□ -1.37
VPS13C-208ENST00000559119 ADSLP30566 484 aaPredicted RBP6.47□□□□□ -1.37
VPS13C-208ENST00000559119 PLA2G5P39877 138 aa6.47□□□□□ -1.37
VPS13C-208ENST00000559119 CDK17Q00537 523 aa6.47□□□□□ -1.37
VPS13C-208ENST00000559119 CPEB4Q17RY0 729 aaKnown RBP eCLIP6.47□□□□□ -1.37
VPS13C-208ENST00000559119 MST1LQ2TV78 715 aa6.47□□□□□ -1.37
VPS13C-208ENST00000559119 AGAP9Q5VTM2 703 aa6.47□□□□□ -1.37
VPS13C-208ENST00000559119 HDGFL2Q7Z4V5 671 aaPredicted RBP6.47□□□□□ -1.37
VPS13C-208ENST00000559119 RHOT2Q8IXI1 618 aa6.47□□□□□ -1.37
VPS13C-208ENST00000559119 SLC44A3Q8N4M1 653 aa6.47□□□□□ -1.37
VPS13C-208ENST00000559119 REPS2Q8NFH8 660 aa6.47□□□□□ -1.37
VPS13C-208ENST00000559119 OR56A1Q8NGH5 318 aa6.47□□□□□ -1.37
VPS13C-208ENST00000559119 SLC9A6Q92581 669 aa6.47□□□□□ -1.37
VPS13C-208ENST00000559119 NEU1Q99519 415 aa6.47□□□□□ -1.37
VPS13C-208ENST00000559119 TOPORSQ9NS56 1045 aaPredicted RBP6.47□□□□□ -1.37
VPS13C-208ENST00000559119 NOX1Q9Y5S8 564 aa6.47□□□□□ -1.37
VPS13C-208ENST00000559119 ULK1O75385 1050 aa6.46□□□□□ -1.38
VPS13C-208ENST00000559119 MYCLP1P12525 358 aaPredicted RBP6.46□□□□□ -1.38
VPS13C-208ENST00000559119 SESN3P58005 492 aa6.46□□□□□ -1.38
VPS13C-208ENST00000559119 RAP2BP61225 183 aa6.46□□□□□ -1.38
VPS13C-208ENST00000559119 DHCR24Q15392 516 aa6.46□□□□□ -1.38
VPS13C-208ENST00000559119 ZKSCAN2Q63HK3 967 aa6.46□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms