RNA–Protein interactions for RNA: ENST00000558218.5

USP3-207, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 717 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-207ENST00000558218 CBX2Q14781 532 aaPredicted RBP11.16□□□□□ -0.62
USP3-207ENST00000558218 LONRF3Q496Y0 759 aa11.16□□□□□ -0.62
USP3-207ENST00000558218 MAEAQ7L5Y9 396 aa11.16□□□□□ -0.62
USP3-207ENST00000558218 BRAPQ7Z569 592 aa11.16□□□□□ -0.62
USP3-207ENST00000558218 COLGALT2Q8IYK4 626 aa11.16□□□□□ -0.62
USP3-207ENST00000558218 SNX29Q8TEQ0 813 aa11.16□□□□□ -0.62
USP3-207ENST00000558218 CPB2Q96IY4 423 aa11.16□□□□□ -0.62
USP3-207ENST00000558218 AK8Q96MA6 479 aa11.16□□□□□ -0.62
USP3-207ENST00000558218 NECTIN4Q96NY8 510 aa11.16□□□□□ -0.62
USP3-207ENST00000558218 GAD1Q99259 594 aa11.16□□□□□ -0.62
USP3-207ENST00000558218 NTPCRQ9BSD7 190 aaKnown RBP11.16□□□□□ -0.62
USP3-207ENST00000558218 COLEC11Q9BWP8 271 aa11.16□□□□□ -0.62
USP3-207ENST00000558218 PHF7Q9BWX1 381 aaPredicted RBP11.16□□□□□ -0.62
USP3-207ENST00000558218 TMEM134Q9H6X4 195 aa11.16□□□□□ -0.62
USP3-207ENST00000558218 GPRC5CQ9NQ84 441 aa11.16□□□□□ -0.62
USP3-207ENST00000558218 DDX19AQ9NUU7 478 aaKnown RBP11.16□□□□□ -0.62
USP3-207ENST00000558218 KCND2Q9NZV8 630 aa11.16□□□□□ -0.62
USP3-207ENST00000558218 DNAJB4Q9UDY4 337 aa11.16□□□□□ -0.62
USP3-207ENST00000558218 BARX2Q9UMQ3 279 aaPredicted RBP11.16□□□□□ -0.62
USP3-207ENST00000558218 RBM19Q9Y4C8 960 aaKnown RBP11.16□□□□□ -0.62
USP3-207ENST00000558218 PCDHGC5Q9Y5F6 944 aa11.16□□□□□ -0.62
USP3-207ENST00000558218 K7ERI5 159 aa11.15□□□□□ -0.62
USP3-207ENST00000558218 NRP1O14786 923 aa11.15□□□□□ -0.62
USP3-207ENST00000558218 DCXO43602 365 aa11.15□□□□□ -0.62
USP3-207ENST00000558218 LILRB3O75022 631 aa11.15□□□□□ -0.62
USP3-207ENST00000558218 CLASP2O75122 1294 aaKnown RBP11.15□□□□□ -0.62
USP3-207ENST00000558218 CSPG5O95196 566 aa11.15□□□□□ -0.62
USP3-207ENST00000558218 CD2BP2O95400 341 aaKnown RBP11.15□□□□□ -0.62
USP3-207ENST00000558218 EFEMP2O95967 443 aa11.15□□□□□ -0.62
USP3-207ENST00000558218 POMCP01189 267 aa11.15□□□□□ -0.62
USP3-207ENST00000558218 SCP2P22307 547 aa11.15□□□□□ -0.62
USP3-207ENST00000558218 IL17AQ16552 155 aa11.15□□□□□ -0.62
USP3-207ENST00000558218 ECM1Q16610 540 aa11.15□□□□□ -0.62
USP3-207ENST00000558218 TMEM31Q5JXX7 168 aa11.15□□□□□ -0.62
USP3-207ENST00000558218 CES5AQ6NT32 575 aa11.15□□□□□ -0.62
USP3-207ENST00000558218 SYCE2Q6PIF2 218 aa11.15□□□□□ -0.62
USP3-207ENST00000558218 TMEM173Q86WV6 379 aaPredicted RBP11.15□□□□□ -0.62
USP3-207ENST00000558218 GSTCDQ8NEC7 633 aa11.15□□□□□ -0.62
USP3-207ENST00000558218 VN1R2Q8NFZ6 395 aa11.15□□□□□ -0.62
USP3-207ENST00000558218 DRC1Q96MC2 740 aa11.15□□□□□ -0.62
USP3-207ENST00000558218 ADPGKQ9BRR6 497 aa11.15□□□□□ -0.62
USP3-207ENST00000558218 EMILIN2Q9BXX0 1053 aa11.15□□□□□ -0.62
USP3-207ENST00000558218 CCDC113Q9H0I3 377 aa11.15□□□□□ -0.62
USP3-207ENST00000558218 ADAM7Q9H2U9 754 aa11.15□□□□□ -0.62
USP3-207ENST00000558218 MRPL17Q9NRX2 175 aaKnown RBP11.15□□□□□ -0.62
USP3-207ENST00000558218 DZANK1Q9NVP4 752 aa11.15□□□□□ -0.62
USP3-207ENST00000558218 DPP7Q9UHL4 492 aa11.15□□□□□ -0.62
USP3-207ENST00000558218 USP15Q9Y4E8 981 aaPredicted RBP11.15□□□□□ -0.62
USP3-207ENST00000558218 HCFC2Q9Y5Z7 792 aa11.15□□□□□ -0.62
USP3-207ENST00000558218 SPTBN5Q9NRC6 3674 aaKnown RBP11.14□□□□□ -0.63
USP3-207ENST00000558218 LOC730098B7Z3J9 87 aa11.14□□□□□ -0.63
USP3-207ENST00000558218 TULP1O00294 542 aaPredicted RBP11.14□□□□□ -0.63
USP3-207ENST00000558218 B4GALT5O43286 388 aa11.14□□□□□ -0.63
USP3-207ENST00000558218 SOD2P04179 222 aa11.14□□□□□ -0.63
USP3-207ENST00000558218 PRKCBP05771 671 aa11.14□□□□□ -0.63
USP3-207ENST00000558218 GUCY2CP25092 1073 aa11.14□□□□□ -0.63
USP3-207ENST00000558218 MLH1P40692 756 aa11.14□□□□□ -0.63
USP3-207ENST00000558218 AFF1P51825 1210 aaKnown RBP11.14□□□□□ -0.63
USP3-207ENST00000558218 GRIK3Q13003 919 aa11.14□□□□□ -0.63
USP3-207ENST00000558218 CLUL1Q15846 466 aa11.14□□□□□ -0.63
USP3-207ENST00000558218 DCAF4L1Q3SXM0 396 aa11.14□□□□□ -0.63
USP3-207ENST00000558218 HERC4Q5GLZ8 1057 aaPredicted RBP11.14□□□□□ -0.63
USP3-207ENST00000558218 RINT1Q6NUQ1 792 aa11.14□□□□□ -0.63
USP3-207ENST00000558218 C1orf186Q6ZWK4 172 aa11.14□□□□□ -0.63
USP3-207ENST00000558218 RNF168Q8IYW5 571 aaPredicted RBP11.14□□□□□ -0.63
USP3-207ENST00000558218 SYT2Q8N9I0 419 aaPredicted RBP11.14□□□□□ -0.63
USP3-207ENST00000558218 SLC22A17Q8WUG5 538 aa11.14□□□□□ -0.63
USP3-207ENST00000558218 BSNDQ8WZ55 320 aa11.14□□□□□ -0.63
USP3-207ENST00000558218 KCNN1Q92952 543 aa11.14□□□□□ -0.63
USP3-207ENST00000558218 INTS4Q96HW7 963 aaKnown RBP11.14□□□□□ -0.63
USP3-207ENST00000558218 MMTAG2Q9BU76 263 aaKnown RBP11.14□□□□□ -0.63
USP3-207ENST00000558218 BACH2Q9BYV9 841 aa11.14□□□□□ -0.63
USP3-207ENST00000558218 GBP3Q9H0R5 595 aa11.14□□□□□ -0.63
USP3-207ENST00000558218 NXF3Q9H4D5 531 aaKnown RBP11.14□□□□□ -0.63
USP3-207ENST00000558218 MIOSQ9NXC5 875 aa11.14□□□□□ -0.63
USP3-207ENST00000558218 HES2Q9Y543 173 aa11.14□□□□□ -0.63
USP3-207ENST00000558218 XIRP2A4UGR9 3374 aa11.14□□□□□ -0.63
USP3-207ENST00000558218 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP11.13□□□□□ -0.63
USP3-207ENST00000558218 PRR33A8MZF0 331 aa11.13□□□□□ -0.63
USP3-207ENST00000558218 E9PMD0 336 aa11.13□□□□□ -0.63
USP3-207ENST00000558218 NPTXRO95502 500 aa11.13□□□□□ -0.63
USP3-207ENST00000558218 MTHFRP42898 656 aa11.13□□□□□ -0.63
USP3-207ENST00000558218 OR1G1P47890 313 aa11.13□□□□□ -0.63
USP3-207ENST00000558218 DMP1Q13316 513 aaPredicted RBP11.13□□□□□ -0.63
USP3-207ENST00000558218 PTPN14Q15678 1187 aa11.13□□□□□ -0.63
USP3-207ENST00000558218 ATAT1Q5SQI0 421 aa11.13□□□□□ -0.63
USP3-207ENST00000558218 ELMSAN1Q6PJG2 1045 aa11.13□□□□□ -0.63
USP3-207ENST00000558218 CYP26C1Q6V0L0 522 aa11.13□□□□□ -0.63
USP3-207ENST00000558218 RNF135Q8IUD6 432 aa11.13□□□□□ -0.63
USP3-207ENST00000558218 HDAC7Q8WUI4 952 aa11.13□□□□□ -0.63
USP3-207ENST00000558218 BCL7CQ8WUZ0 217 aaPredicted RBP11.13□□□□□ -0.63
USP3-207ENST00000558218 SPIRE2Q8WWL2 714 aa11.13□□□□□ -0.63
USP3-207ENST00000558218 ZFP42Q96MM3 310 aa11.13□□□□□ -0.63
USP3-207ENST00000558218 KLHL5Q96PQ7 755 aa11.13□□□□□ -0.63
USP3-207ENST00000558218 RPS6KC1Q96S38 1066 aa11.13□□□□□ -0.63
USP3-207ENST00000558218 LRFN3Q9BTN0 628 aa11.13□□□□□ -0.63
USP3-207ENST00000558218 HERC2P3Q9BVR0 1158 aa11.13□□□□□ -0.63
USP3-207ENST00000558218 RHOBTB2Q9BYZ6 727 aa11.13□□□□□ -0.63
USP3-207ENST00000558218 PDZD7Q9H5P4 517 aa11.13□□□□□ -0.63
USP3-207ENST00000558218 RXFP1Q9HBX9 757 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms