RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 OR2W6PQ8NHA6 318 aa3.93□□□□□ -1.78
VPS13C-205ENST00000558088 SNX33Q8WV41 574 aa3.93□□□□□ -1.78
VPS13C-205ENST00000558088 ADAM2Q99965 735 aa3.93□□□□□ -1.78
VPS13C-205ENST00000558088 ANO3Q9BYT9 981 aa3.93□□□□□ -1.78
VPS13C-205ENST00000558088 INO80BQ9C086 356 aaPredicted RBP3.93□□□□□ -1.78
VPS13C-205ENST00000558088 MTFR1LQ9H019 292 aa3.93□□□□□ -1.78
VPS13C-205ENST00000558088 TMEM260Q9NX78 707 aa3.93□□□□□ -1.78
VPS13C-205ENST00000558088 EVLQ9UI08 416 aaPredicted RBP3.93□□□□□ -1.78
VPS13C-205ENST00000558088 PPP2R3BQ9Y5P8 575 aa3.93□□□□□ -1.78
VPS13C-205ENST00000558088 MAST3O60307 1309 aa3.93□□□□□ -1.78
VPS13C-205ENST00000558088 MARCH11A6NNE9 402 aa3.92□□□□□ -1.78
VPS13C-205ENST00000558088 PHF2O75151 1096 aa3.92□□□□□ -1.78
VPS13C-205ENST00000558088 ERBB2P04626 1255 aa3.92□□□□□ -1.78
VPS13C-205ENST00000558088 CFIP05156 583 aa3.92□□□□□ -1.78
VPS13C-205ENST00000558088 SNRPA1P09661 255 aaKnown RBP3.92□□□□□ -1.78
VPS13C-205ENST00000558088 POU3F2P20265 443 aaPredicted RBP3.92□□□□□ -1.78
VPS13C-205ENST00000558088 CRHR1P34998 444 aa3.92□□□□□ -1.78
VPS13C-205ENST00000558088 LSSP48449 732 aa3.92□□□□□ -1.78
VPS13C-205ENST00000558088 FLT3LGP49771 235 aa3.92□□□□□ -1.78
VPS13C-205ENST00000558088 CHN2P52757 468 aa3.92□□□□□ -1.78
VPS13C-205ENST00000558088 MANFP55145 182 aaKnown RBP3.92□□□□□ -1.78
VPS13C-205ENST00000558088 TERF2Q15554 542 aa3.92□□□□□ -1.78
VPS13C-205ENST00000558088 SP5Q6BEB4 398 aaPredicted RBP3.92□□□□□ -1.78
VPS13C-205ENST00000558088 CNNM4Q6P4Q7 775 aa3.92□□□□□ -1.78
VPS13C-205ENST00000558088 LRRTM3Q86VH5 581 aa3.92□□□□□ -1.78
VPS13C-205ENST00000558088 GLCCI1Q86VQ1 547 aa3.92□□□□□ -1.78
VPS13C-205ENST00000558088 SMC1BQ8NDV3 1235 aa3.92□□□□□ -1.78
VPS13C-205ENST00000558088 OR56A1Q8NGH5 318 aa3.92□□□□□ -1.78
VPS13C-205ENST00000558088 LRFN3Q9BTN0 628 aa3.92□□□□□ -1.78
VPS13C-205ENST00000558088 PRDM13Q9H4Q3 707 aa3.92□□□□□ -1.78
VPS13C-205ENST00000558088 ZSWIM4Q9H7M6 989 aa3.92□□□□□ -1.78
VPS13C-205ENST00000558088 TBCCD1Q9NVR7 557 aa3.92□□□□□ -1.78
VPS13C-205ENST00000558088 LRIT1Q9P2V4 623 aa3.92□□□□□ -1.78
VPS13C-205ENST00000558088 PJA2O43164 708 aa3.91□□□□□ -1.78
VPS13C-205ENST00000558088 PTPN7P35236 360 aa3.91□□□□□ -1.78
VPS13C-205ENST00000558088 MPLP40238 635 aa3.91□□□□□ -1.78
VPS13C-205ENST00000558088 PTH2RP49190 550 aa3.91□□□□□ -1.78
VPS13C-205ENST00000558088 CLRN1P58418 232 aa3.91□□□□□ -1.78
VPS13C-205ENST00000558088 RRP12Q5JTH9 1297 aaKnown RBP3.91□□□□□ -1.78
VPS13C-205ENST00000558088 PRAMEF14Q5SWL7 426 aa3.91□□□□□ -1.78
VPS13C-205ENST00000558088 GJC2Q5T442 439 aaPredicted RBP3.91□□□□□ -1.78
VPS13C-205ENST00000558088 AGAP9Q5VTM2 703 aa3.91□□□□□ -1.78
VPS13C-205ENST00000558088 FAM180AQ6UWF9 173 aa3.91□□□□□ -1.78
VPS13C-205ENST00000558088 HOMER1Q86YM7 354 aa3.91□□□□□ -1.78
VPS13C-205ENST00000558088 MAPKAPK5Q8IW41 473 aa3.91□□□□□ -1.78
VPS13C-205ENST00000558088 RHOT2Q8IXI1 618 aa3.91□□□□□ -1.78
VPS13C-205ENST00000558088 RNF31Q96EP0 1072 aa3.91□□□□□ -1.78
VPS13C-205ENST00000558088 HEPHQ9BQS7 1158 aa3.91□□□□□ -1.78
VPS13C-205ENST00000558088 ALOXE3Q9BYJ1 711 aa3.91□□□□□ -1.78
VPS13C-205ENST00000558088 CASS4Q9NQ75 786 aa3.91□□□□□ -1.78
VPS13C-205ENST00000558088 NOC2LQ9Y3T9 749 aaKnown RBP3.91□□□□□ -1.78
VPS13C-205ENST00000558088 CDY2AQ9Y6F7 541 aa3.91□□□□□ -1.78
VPS13C-205ENST00000558088 RPTORQ8N122 1335 aa3.91□□□□□ -1.78
VPS13C-205ENST00000558088 DRGXA6NNA5 263 aa3.9□□□□□ -1.79
VPS13C-205ENST00000558088 TMEM127O75204 238 aa3.9□□□□□ -1.79
VPS13C-205ENST00000558088 CTSSP25774 331 aa3.9□□□□□ -1.79
VPS13C-205ENST00000558088 KRTAP10-11P60412 298 aa3.9□□□□□ -1.79
VPS13C-205ENST00000558088 MRPS35P82673 323 aaKnown RBP3.9□□□□□ -1.79
VPS13C-205ENST00000558088 FAM47AQ5JRC9 791 aa3.9□□□□□ -1.79
VPS13C-205ENST00000558088 TSHZ3Q63HK5 1081 aa3.9□□□□□ -1.79
VPS13C-205ENST00000558088 ABHD15Q6UXT9 468 aa3.9□□□□□ -1.79
VPS13C-205ENST00000558088 ARHGEF25Q86VW2 580 aa3.9□□□□□ -1.79
VPS13C-205ENST00000558088 DRC7Q8IY82 874 aa3.9□□□□□ -1.79
VPS13C-205ENST00000558088 CEP95Q96GE4 821 aa3.9□□□□□ -1.79
VPS13C-205ENST00000558088 Q96MF0 132 aa3.9□□□□□ -1.79
VPS13C-205ENST00000558088 KCTD10Q9H3F6 313 aa3.9□□□□□ -1.79
VPS13C-205ENST00000558088 RNPEPQ9H4A4 650 aa3.9□□□□□ -1.79
VPS13C-205ENST00000558088 SPTLC3Q9NUV7 552 aa3.9□□□□□ -1.79
VPS13C-205ENST00000558088 DMTF1Q9Y222 760 aa3.9□□□□□ -1.79
VPS13C-205ENST00000558088 CD2APQ9Y5K6 639 aa3.9□□□□□ -1.79
VPS13C-205ENST00000558088 LCHNA4D1U4 455 aa3.89□□□□□ -1.79
VPS13C-205ENST00000558088 MYADML2A6NDP7 307 aa3.89□□□□□ -1.79
VPS13C-205ENST00000558088 FKBP9O95302 570 aa3.89□□□□□ -1.79
VPS13C-205ENST00000558088 IGLV2-14P01704 120 aa3.89□□□□□ -1.79
VPS13C-205ENST00000558088 CANXP27824 592 aaKnown RBP3.89□□□□□ -1.79
VPS13C-205ENST00000558088 LGALS4P56470 323 aa3.89□□□□□ -1.79
VPS13C-205ENST00000558088 RAP2BP61225 183 aa3.89□□□□□ -1.79
VPS13C-205ENST00000558088 TRIM25Q14258 630 aaKnown RBP3.89□□□□□ -1.79
VPS13C-205ENST00000558088 ZNF169Q14929 603 aaPredicted RBP3.89□□□□□ -1.79
VPS13C-205ENST00000558088 C21orf62-AS1Q17RA5 79 aa3.89□□□□□ -1.79
VPS13C-205ENST00000558088 MFSD14BQ5SR56 506 aa3.89□□□□□ -1.79
VPS13C-205ENST00000558088 ZNF362Q5T0B9 420 aaPredicted RBP3.89□□□□□ -1.79
VPS13C-205ENST00000558088 FOXR2Q6PJQ5 311 aa3.89□□□□□ -1.79
VPS13C-205ENST00000558088 Q6ZNX1 250 aa3.89□□□□□ -1.79
VPS13C-205ENST00000558088 MED25Q71SY5 747 aa3.89□□□□□ -1.79
VPS13C-205ENST00000558088 FKBP9P1Q75LS8 142 aa3.89□□□□□ -1.79
VPS13C-205ENST00000558088 FAM43AQ8N2R8 423 aa3.89□□□□□ -1.79
VPS13C-205ENST00000558088 TMEM132CQ8N3T6 1108 aa3.89□□□□□ -1.79
VPS13C-205ENST00000558088 ZNF384Q8TF68 577 aa3.89□□□□□ -1.79
VPS13C-205ENST00000558088 SLC5A5Q92911 643 aa3.89□□□□□ -1.79
VPS13C-205ENST00000558088 NINJ1Q92982 152 aa3.89□□□□□ -1.79
VPS13C-205ENST00000558088 FUBP3Q96I24 572 aaKnown RBP eCLIP3.89□□□□□ -1.79
VPS13C-205ENST00000558088 FEZ1Q99689 392 aa3.89□□□□□ -1.79
VPS13C-205ENST00000558088 MS4A5Q9H3V2 200 aa3.89□□□□□ -1.79
VPS13C-205ENST00000558088 KANSL2Q9H9L4 492 aa3.89□□□□□ -1.79
VPS13C-205ENST00000558088 GALNT9Q9HCQ5 603 aa3.89□□□□□ -1.79
VPS13C-205ENST00000558088 KLHL11Q9NVR0 708 aa3.89□□□□□ -1.79
VPS13C-205ENST00000558088 TMPRSS11EQ9UL52 423 aa3.89□□□□□ -1.79
VPS13C-205ENST00000558088 FRMD4BQ9Y2L6 1034 aa3.89□□□□□ -1.79
VPS13C-205ENST00000558088 CXorf49A8MYA2 514 aaPredicted RBP3.88□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms