RNA–Protein interactions for RNA: ENST00000557466.1

VIPAS39-210, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-210ENST00000557466 URGCPQ8TCY9 931 aa16.23■□□□□ 0.19
VIPAS39-210ENST00000557466 SMARCE1Q969G3 411 aa16.23■□□□□ 0.19
VIPAS39-210ENST00000557466 TGS1Q96RS0 853 aaKnown RBP16.23■□□□□ 0.19
VIPAS39-210ENST00000557466 C17orf80Q9BSJ5 609 aa16.23■□□□□ 0.19
VIPAS39-210ENST00000557466 CCDC94Q9BW85 323 aaPredicted RBP16.23■□□□□ 0.19
VIPAS39-210ENST00000557466 MRPL9Q9BYD2 267 aaKnown RBP16.23■□□□□ 0.19
VIPAS39-210ENST00000557466 CXCL16Q9H2A7 254 aa16.23■□□□□ 0.19
VIPAS39-210ENST00000557466 CWH43Q9H720 699 aa16.23■□□□□ 0.19
VIPAS39-210ENST00000557466 CERS4Q9HA82 394 aa16.23■□□□□ 0.19
VIPAS39-210ENST00000557466 UBN1Q9NPG3 1134 aa16.23■□□□□ 0.19
VIPAS39-210ENST00000557466 TYW1Q9NV66 732 aaKnown RBP16.23■□□□□ 0.19
VIPAS39-210ENST00000557466 TBC1D13Q9NVG8 400 aa16.23■□□□□ 0.19
VIPAS39-210ENST00000557466 MTUS1Q9ULD2 1270 aa16.23■□□□□ 0.19
VIPAS39-210ENST00000557466 OGTO15294 1046 aa16.22■□□□□ 0.19
VIPAS39-210ENST00000557466 MEFVO15553 781 aaPredicted RBP16.22■□□□□ 0.19
VIPAS39-210ENST00000557466 B4GALT3O60512 393 aa16.22■□□□□ 0.19
VIPAS39-210ENST00000557466 SMC2O95347 1197 aa16.22■□□□□ 0.19
VIPAS39-210ENST00000557466 TNFSF9P41273 254 aa16.22■□□□□ 0.19
VIPAS39-210ENST00000557466 SCNN1GP51170 649 aa16.22■□□□□ 0.19
VIPAS39-210ENST00000557466 ERVK-21P61565 698 aa16.22■□□□□ 0.19
VIPAS39-210ENST00000557466 SLFN12LQ6IEE8 588 aa16.22■□□□□ 0.19
VIPAS39-210ENST00000557466 Q7L0L9 218 aa16.22■□□□□ 0.19
VIPAS39-210ENST00000557466 GSTCDQ8NEC7 633 aa16.22■□□□□ 0.19
VIPAS39-210ENST00000557466 GPT2Q8TD30 523 aa16.22■□□□□ 0.19
VIPAS39-210ENST00000557466 RSPH1Q8WYR4 309 aa16.22■□□□□ 0.19
VIPAS39-210ENST00000557466 POMGNT1Q8WZA1 660 aa16.22■□□□□ 0.19
VIPAS39-210ENST00000557466 CLP1Q92989 425 aaKnown RBP16.22■□□□□ 0.19
VIPAS39-210ENST00000557466 GSDMAQ96QA5 445 aa16.22■□□□□ 0.19
VIPAS39-210ENST00000557466 RPS6KC1Q96S38 1066 aa16.22■□□□□ 0.19
VIPAS39-210ENST00000557466 MSTO1Q9BUK6 570 aa16.22■□□□□ 0.19
VIPAS39-210ENST00000557466 MIOSQ9NXC5 875 aa16.22■□□□□ 0.19
VIPAS39-210ENST00000557466 LAMA3Q16787 3333 aa16.22■□□□□ 0.19
VIPAS39-210ENST00000557466 EPOPA6NHQ4 379 aa16.21■□□□□ 0.19
VIPAS39-210ENST00000557466 PTGESO14684 152 aa16.21■□□□□ 0.19
VIPAS39-210ENST00000557466 TGFB1I1O43294 461 aa16.21■□□□□ 0.19
VIPAS39-210ENST00000557466 POMCP01189 267 aa16.21■□□□□ 0.19
VIPAS39-210ENST00000557466 CTNNB1P35222 781 aa16.21■□□□□ 0.19
VIPAS39-210ENST00000557466 CAMK4Q16566 473 aa16.21■□□□□ 0.19
VIPAS39-210ENST00000557466 SMYD4Q8IYR2 804 aaPredicted RBP16.21■□□□□ 0.19
VIPAS39-210ENST00000557466 SNX27Q96L92 541 aa16.21■□□□□ 0.19
VIPAS39-210ENST00000557466 FAM161BQ96MY7 647 aa16.21■□□□□ 0.19
VIPAS39-210ENST00000557466 SAMD11Q96NU1 681 aa16.21■□□□□ 0.19
VIPAS39-210ENST00000557466 ACAP3Q96P50 834 aa16.21■□□□□ 0.19
VIPAS39-210ENST00000557466 CBWD1Q9BRT8 395 aa16.21■□□□□ 0.19
VIPAS39-210ENST00000557466 GBP3Q9H0R5 595 aa16.21■□□□□ 0.19
VIPAS39-210ENST00000557466 CLSTN2Q9H4D0 955 aa16.21■□□□□ 0.19
VIPAS39-210ENST00000557466 RMND1Q9NWS8 449 aa16.21■□□□□ 0.19
VIPAS39-210ENST00000557466 MAN1B1Q9UKM7 699 aa16.21■□□□□ 0.19
VIPAS39-210ENST00000557466 AGO2Q9UKV8 859 aaKnown RBP16.21■□□□□ 0.19
VIPAS39-210ENST00000557466 PLAGL2Q9UPG8 496 aa16.21■□□□□ 0.19
VIPAS39-210ENST00000557466 DDHD2O94830 711 aa16.2■□□□□ 0.18
VIPAS39-210ENST00000557466 CLTAP09496 248 aa16.2■□□□□ 0.18
VIPAS39-210ENST00000557466 CXCL8P10145 99 aa16.2■□□□□ 0.18
VIPAS39-210ENST00000557466 GARTP22102 1010 aa16.2■□□□□ 0.18
VIPAS39-210ENST00000557466 YARSP54577 528 aaKnown RBP16.2■□□□□ 0.18
VIPAS39-210ENST00000557466 GRIK3Q13003 919 aa16.2■□□□□ 0.18
VIPAS39-210ENST00000557466 KNOP1Q1ED39 458 aaKnown RBP16.2■□□□□ 0.18
VIPAS39-210ENST00000557466 EPC2Q52LR7 807 aa16.2■□□□□ 0.18
VIPAS39-210ENST00000557466 GLRA4Q5JXX5 417 aa16.2■□□□□ 0.18
VIPAS39-210ENST00000557466 SPOUT1Q5T280 376 aaKnown RBP16.2■□□□□ 0.18
VIPAS39-210ENST00000557466 ARMCX5Q6P1M9 558 aa16.2■□□□□ 0.18
VIPAS39-210ENST00000557466 ZNF280BQ86YH2 543 aa16.2■□□□□ 0.18
VIPAS39-210ENST00000557466 COLGALT1Q8NBJ5 622 aa16.2■□□□□ 0.18
VIPAS39-210ENST00000557466 ZSWIM2Q8NEG5 633 aa16.2■□□□□ 0.18
VIPAS39-210ENST00000557466 ARNTL2Q8WYA1 636 aa16.2■□□□□ 0.18
VIPAS39-210ENST00000557466 SEMA6BQ9H3T3 888 aa16.2■□□□□ 0.18
VIPAS39-210ENST00000557466 NRDE2Q9H7Z3 1164 aa16.2■□□□□ 0.18
VIPAS39-210ENST00000557466 AGPAT3Q9NRZ7 376 aa16.2■□□□□ 0.18
VIPAS39-210ENST00000557466 TOPORSQ9NS56 1045 aaPredicted RBP16.2■□□□□ 0.18
VIPAS39-210ENST00000557466 MAPK8IP1Q9UQF2 711 aa16.2■□□□□ 0.18
VIPAS39-210ENST00000557466 RWDD3Q9Y3V2 267 aa16.2■□□□□ 0.18
VIPAS39-210ENST00000557466 SZT2Q5T011 3432 aa16.2■□□□□ 0.18
VIPAS39-210ENST00000557466 ZC3H11AO75152 810 aaKnown RBP eCLIP16.19■□□□□ 0.18
VIPAS39-210ENST00000557466 LAG3P18627 525 aa16.19■□□□□ 0.18
VIPAS39-210ENST00000557466 MCM4P33991 863 aa16.19■□□□□ 0.18
VIPAS39-210ENST00000557466 BMPR1AP36894 532 aa16.19■□□□□ 0.18
VIPAS39-210ENST00000557466 PBX3P40426 434 aa16.19■□□□□ 0.18
VIPAS39-210ENST00000557466 ACOT2P49753 483 aa16.19■□□□□ 0.18
VIPAS39-210ENST00000557466 RNASELQ05823 741 aaKnown RBP16.19■□□□□ 0.18
VIPAS39-210ENST00000557466 GRIN2CQ14957 1233 aa16.19■□□□□ 0.18
VIPAS39-210ENST00000557466 KYAT1Q16773 422 aa16.19■□□□□ 0.18
VIPAS39-210ENST00000557466 SLC10A6Q3KNW5 377 aa16.19■□□□□ 0.18
VIPAS39-210ENST00000557466 XKR4Q5GH76 650 aa16.19■□□□□ 0.18
VIPAS39-210ENST00000557466 ZNF658Q5TYW1 1059 aaPredicted RBP16.19■□□□□ 0.18
VIPAS39-210ENST00000557466 FBXO22Q8NEZ5 403 aa16.19■□□□□ 0.18
VIPAS39-210ENST00000557466 SAAL1Q96ER3 474 aa16.19■□□□□ 0.18
VIPAS39-210ENST00000557466 NUP62CLQ9H1M0 184 aa16.19■□□□□ 0.18
VIPAS39-210ENST00000557466 KCTD10Q9H3F6 313 aa16.19■□□□□ 0.18
VIPAS39-210ENST00000557466 PCIF1Q9H4Z3 704 aa16.19■□□□□ 0.18
VIPAS39-210ENST00000557466 KANSL3Q9P2N6 904 aa16.19■□□□□ 0.18
VIPAS39-210ENST00000557466 DNAJB4Q9UDY4 337 aa16.19■□□□□ 0.18
VIPAS39-210ENST00000557466 CPSF3Q9UKF6 684 aaKnown RBP16.19■□□□□ 0.18
VIPAS39-210ENST00000557466 GOLGA8IPA6NC78 632 aa16.18■□□□□ 0.18
VIPAS39-210ENST00000557466 GOLGA8JA6NMD2 632 aa16.18■□□□□ 0.18
VIPAS39-210ENST00000557466 C5orf67F2Z3F1 127 aa16.18■□□□□ 0.18
VIPAS39-210ENST00000557466 RFXAPO00287 272 aa16.18■□□□□ 0.18
VIPAS39-210ENST00000557466 CLIC2O15247 247 aa16.18■□□□□ 0.18
VIPAS39-210ENST00000557466 DSC1Q08554 894 aa16.18■□□□□ 0.18
VIPAS39-210ENST00000557466 NAB2Q15742 525 aa16.18■□□□□ 0.18
VIPAS39-210ENST00000557466 ENOX2Q16206 610 aaKnown RBP16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms