RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 GZF1Q9H116 711 aaPredicted RBP13.99□□□□□ -0.17
SHMT2-227ENST00000557269 PARP2Q9UGN5 583 aa13.99□□□□□ -0.17
SHMT2-227ENST00000557269 CPSF3Q9UKF6 684 aaKnown RBP13.99□□□□□ -0.17
SHMT2-227ENST00000557269 COLQQ9Y215 455 aaPredicted RBP13.99□□□□□ -0.17
SHMT2-227ENST00000557269 PSMA7O14818 248 aa13.98□□□□□ -0.17
SHMT2-227ENST00000557269 CALUO43852 315 aaPredicted RBP13.98□□□□□ -0.17
SHMT2-227ENST00000557269 OFD1O75665 1012 aa13.98□□□□□ -0.17
SHMT2-227ENST00000557269 DGKIO75912 1065 aa13.98□□□□□ -0.17
SHMT2-227ENST00000557269 SKIP12755 728 aa13.98□□□□□ -0.17
SHMT2-227ENST00000557269 CASP4P49662 377 aa13.98□□□□□ -0.17
SHMT2-227ENST00000557269 RABGGTBP53611 331 aa13.98□□□□□ -0.17
SHMT2-227ENST00000557269 SNRPFP62306 86 aaKnown RBP13.98□□□□□ -0.17
SHMT2-227ENST00000557269 STIM1Q13586 685 aa13.98□□□□□ -0.17
SHMT2-227ENST00000557269 ENOX2Q16206 610 aaKnown RBP13.98□□□□□ -0.17
SHMT2-227ENST00000557269 SLC10A6Q3KNW5 377 aa13.98□□□□□ -0.17
SHMT2-227ENST00000557269 CBWD2Q8IUF1 395 aa13.98□□□□□ -0.17
SHMT2-227ENST00000557269 TDHQ8IZJ6 230 aa13.98□□□□□ -0.17
SHMT2-227ENST00000557269 GSTCDQ8NEC7 633 aa13.98□□□□□ -0.17
SHMT2-227ENST00000557269 GOLGA5Q8TBA6 731 aa13.98□□□□□ -0.17
SHMT2-227ENST00000557269 PHOSPHO2Q8TCD6 241 aa13.98□□□□□ -0.17
SHMT2-227ENST00000557269 HELQQ8TDG4 1101 aa13.98□□□□□ -0.17
SHMT2-227ENST00000557269 NOC3LQ8WTT2 800 aaKnown RBP13.98□□□□□ -0.17
SHMT2-227ENST00000557269 PGBD4Q96DM1 585 aa13.98□□□□□ -0.17
SHMT2-227ENST00000557269 CASD1Q96PB1 797 aa13.98□□□□□ -0.17
SHMT2-227ENST00000557269 GAD1Q99259 594 aa13.98□□□□□ -0.17
SHMT2-227ENST00000557269 RC3H2Q9HBD1 1191 aaKnown RBP13.98□□□□□ -0.17
SHMT2-227ENST00000557269 MIOSQ9NXC5 875 aa13.98□□□□□ -0.17
SHMT2-227ENST00000557269 LRFN2Q9ULH4 789 aa13.98□□□□□ -0.17
SHMT2-227ENST00000557269 ARL5CA6NH57 179 aa13.97□□□□□ -0.17
SHMT2-227ENST00000557269 EXTL3O43909 919 aa13.97□□□□□ -0.17
SHMT2-227ENST00000557269 LETM1O95202 739 aaPredicted RBP13.97□□□□□ -0.17
SHMT2-227ENST00000557269 GJB5O95377 273 aa13.97□□□□□ -0.17
SHMT2-227ENST00000557269 ADRB2P07550 413 aa13.97□□□□□ -0.17
SHMT2-227ENST00000557269 CLTAP09496 248 aa13.97□□□□□ -0.17
SHMT2-227ENST00000557269 CXCL8P10145 99 aa13.97□□□□□ -0.17
SHMT2-227ENST00000557269 MYOGP15173 224 aa13.97□□□□□ -0.17
SHMT2-227ENST00000557269 MLH1P40692 756 aa13.97□□□□□ -0.17
SHMT2-227ENST00000557269 PPP1R2P41236 205 aa13.97□□□□□ -0.17
SHMT2-227ENST00000557269 SPAG1Q07617 926 aa13.97□□□□□ -0.17
SHMT2-227ENST00000557269 PAK1Q13153 545 aa13.97□□□□□ -0.17
SHMT2-227ENST00000557269 STX1AQ16623 288 aa13.97□□□□□ -0.17
SHMT2-227ENST00000557269 NFIL3Q16649 462 aa13.97□□□□□ -0.17
SHMT2-227ENST00000557269 ALKAL1Q6UXT8 129 aa13.97□□□□□ -0.17
SHMT2-227ENST00000557269 LRRC55Q6ZSA7 311 aa13.97□□□□□ -0.17
SHMT2-227ENST00000557269 APBB1IPQ7Z5R6 666 aaPredicted RBP13.97□□□□□ -0.17
SHMT2-227ENST00000557269 SLC9A9Q8IVB4 645 aa13.97□□□□□ -0.17
SHMT2-227ENST00000557269 GPD1LQ8N335 351 aa13.97□□□□□ -0.17
SHMT2-227ENST00000557269 TMEM130Q8N3G9 435 aa13.97□□□□□ -0.17
SHMT2-227ENST00000557269 RDH13Q8NBN7 331 aa13.97□□□□□ -0.17
SHMT2-227ENST00000557269 TMEM174Q8WUU8 243 aa13.97□□□□□ -0.17
SHMT2-227ENST00000557269 ZNF689Q96CS4 500 aaPredicted RBP13.97□□□□□ -0.17
SHMT2-227ENST00000557269 FBXL18Q96ME1 805 aa13.97□□□□□ -0.17
SHMT2-227ENST00000557269 ACAP3Q96P50 834 aa13.97□□□□□ -0.17
SHMT2-227ENST00000557269 SLC9A7Q96T83 725 aa13.97□□□□□ -0.17
SHMT2-227ENST00000557269 CCDC94Q9BW85 323 aaPredicted RBP13.97□□□□□ -0.17
SHMT2-227ENST00000557269 DNAJC25Q9H1X3 360 aa13.97□□□□□ -0.17
SHMT2-227ENST00000557269 MTIF3Q9H2K0 278 aaKnown RBP13.97□□□□□ -0.17
SHMT2-227ENST00000557269 RSAD1Q9HA92 442 aa13.97□□□□□ -0.17
SHMT2-227ENST00000557269 CGNQ9P2M7 1197 aaKnown RBP13.97□□□□□ -0.17
SHMT2-227ENST00000557269 HCSTQ9UBK5 93 aa13.97□□□□□ -0.17
SHMT2-227ENST00000557269 PLAGL2Q9UPG8 496 aa13.97□□□□□ -0.17
SHMT2-227ENST00000557269 INPP5FQ9Y2H2 1132 aa13.97□□□□□ -0.17
SHMT2-227ENST00000557269 LCHNA4D1U4 455 aa13.96□□□□□ -0.17
SHMT2-227ENST00000557269 TBKBP1A7MCY6 615 aa13.96□□□□□ -0.17
SHMT2-227ENST00000557269 LACTBL1A8MY62 500 aa13.96□□□□□ -0.17
SHMT2-227ENST00000557269 PTGESO14684 152 aa13.96□□□□□ -0.17
SHMT2-227ENST00000557269 EXOC3O60645 756 aa13.96□□□□□ -0.17
SHMT2-227ENST00000557269 AKAP3O75969 853 aa13.96□□□□□ -0.17
SHMT2-227ENST00000557269 NR2F2P24468 414 aa13.96□□□□□ -0.17
SHMT2-227ENST00000557269 PBX2P40425 430 aa13.96□□□□□ -0.17
SHMT2-227ENST00000557269 HTRA4P83105 476 aaPredicted RBP13.96□□□□□ -0.17
SHMT2-227ENST00000557269 LRRC63Q05C16 580 aa13.96□□□□□ -0.17
SHMT2-227ENST00000557269 ADAM9Q13443 819 aa13.96□□□□□ -0.17
SHMT2-227ENST00000557269 EDRF1Q3B7T1 1238 aa13.96□□□□□ -0.17
SHMT2-227ENST00000557269 PAN2Q504Q3 1202 aaKnown RBP13.96□□□□□ -0.17
SHMT2-227ENST00000557269 PRPF38BQ5VTL8 546 aaKnown RBP13.96□□□□□ -0.17
SHMT2-227ENST00000557269 ZC3H3Q8IXZ2 948 aaKnown RBP13.96□□□□□ -0.17
SHMT2-227ENST00000557269 XXYLT1Q8NBI6 393 aa13.96□□□□□ -0.17
SHMT2-227ENST00000557269 FAM84AQ96KN4 292 aa13.96□□□□□ -0.17
SHMT2-227ENST00000557269 SNX27Q96L92 541 aa13.96□□□□□ -0.17
SHMT2-227ENST00000557269 ZMAT2Q96NC0 199 aaKnown RBP13.96□□□□□ -0.17
SHMT2-227ENST00000557269 ANO10Q9NW15 660 aa13.96□□□□□ -0.17
SHMT2-227ENST00000557269 RWDD2AQ9UIY3 292 aa13.96□□□□□ -0.17
SHMT2-227ENST00000557269 GIT1Q9Y2X7 761 aa13.96□□□□□ -0.17
SHMT2-227ENST00000557269 TTC26A0AVF1 554 aa13.95□□□□□ -0.18
SHMT2-227ENST00000557269 INPPL1O15357 1258 aa13.95□□□□□ -0.18
SHMT2-227ENST00000557269 B4GALT3O60512 393 aa13.95□□□□□ -0.18
SHMT2-227ENST00000557269 ARHGEF15O94989 841 aa13.95□□□□□ -0.18
SHMT2-227ENST00000557269 POMCP01189 267 aa13.95□□□□□ -0.18
SHMT2-227ENST00000557269 SCNN1GP51170 649 aa13.95□□□□□ -0.18
SHMT2-227ENST00000557269 MYBPC2Q14324 1141 aa13.95□□□□□ -0.18
SHMT2-227ENST00000557269 SNRNP35Q16560 246 aaKnown RBP13.95□□□□□ -0.18
SHMT2-227ENST00000557269 ANO6Q4KMQ2 910 aa13.95□□□□□ -0.18
SHMT2-227ENST00000557269 XKR4Q5GH76 650 aa13.95□□□□□ -0.18
SHMT2-227ENST00000557269 GLRA4Q5JXX5 417 aa13.95□□□□□ -0.18
SHMT2-227ENST00000557269 CEP135Q66GS9 1140 aa13.95□□□□□ -0.18
SHMT2-227ENST00000557269 GLB1LQ6UWU2 654 aa13.95□□□□□ -0.18
SHMT2-227ENST00000557269 HACE1Q8IYU2 909 aa13.95□□□□□ -0.18
SHMT2-227ENST00000557269 PLEKHO2Q8TD55 490 aa13.95□□□□□ -0.18
SHMT2-227ENST00000557269 FAM212AQ96EL1 285 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms