RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 ZMYM2Q9UBW7 1377 aa19.13■□□□□ 0.65
SHMT2-225ENST00000556798 EIF3DO15371 548 aaKnown RBP eCLIP19.12■□□□□ 0.65
SHMT2-225ENST00000556798 CTNNB1P35222 781 aa19.12■□□□□ 0.65
SHMT2-225ENST00000556798 HOXD13P35453 343 aa19.12■□□□□ 0.65
SHMT2-225ENST00000556798 GRM5P41594 1212 aa19.12■□□□□ 0.65
SHMT2-225ENST00000556798 SCNN1GP51170 649 aa19.12■□□□□ 0.65
SHMT2-225ENST00000556798 NELFCDQ8IXH7 590 aa19.12■□□□□ 0.65
SHMT2-225ENST00000556798 URGCPQ8TCY9 931 aa19.12■□□□□ 0.65
SHMT2-225ENST00000556798 SCFD1Q8WVM8 642 aa19.12■□□□□ 0.65
SHMT2-225ENST00000556798 CLP1Q92989 425 aaKnown RBP19.12■□□□□ 0.65
SHMT2-225ENST00000556798 MSTO1Q9BUK6 570 aa19.12■□□□□ 0.65
SHMT2-225ENST00000556798 GBP3Q9H0R5 595 aa19.12■□□□□ 0.65
SHMT2-225ENST00000556798 CWH43Q9H720 699 aa19.12■□□□□ 0.65
SHMT2-225ENST00000556798 MIOSQ9NXC5 875 aa19.12■□□□□ 0.65
SHMT2-225ENST00000556798 RFXAPO00287 272 aa19.11■□□□□ 0.65
SHMT2-225ENST00000556798 B4GALT3O60512 393 aa19.11■□□□□ 0.65
SHMT2-225ENST00000556798 PBX3P40426 434 aa19.11■□□□□ 0.65
SHMT2-225ENST00000556798 RNASELQ05823 741 aaKnown RBP19.11■□□□□ 0.65
SHMT2-225ENST00000556798 EPC2Q52LR7 807 aa19.11■□□□□ 0.65
SHMT2-225ENST00000556798 ZBTB41Q5SVQ8 909 aa19.11■□□□□ 0.65
SHMT2-225ENST00000556798 GSTCDQ8NEC7 633 aa19.11■□□□□ 0.65
SHMT2-225ENST00000556798 ZNF507Q8TCN5 953 aa19.11■□□□□ 0.65
SHMT2-225ENST00000556798 CCDC47Q96A33 483 aaKnown RBP19.11■□□□□ 0.65
SHMT2-225ENST00000556798 RPS6KC1Q96S38 1066 aa19.11■□□□□ 0.65
SHMT2-225ENST00000556798 CCDC94Q9BW85 323 aaPredicted RBP19.11■□□□□ 0.65
SHMT2-225ENST00000556798 PRDM12Q9H4Q4 367 aa19.11■□□□□ 0.65
SHMT2-225ENST00000556798 TRANK1O15050 2925 aa19.11■□□□□ 0.65
SHMT2-225ENST00000556798 UBE4BO95155 1302 aa19.1■□□□□ 0.65
SHMT2-225ENST00000556798 A0A0B4J269 797 aa19.1■□□□□ 0.65
SHMT2-225ENST00000556798 ZC3H11AO75152 810 aaKnown RBP eCLIP19.1■□□□□ 0.65
SHMT2-225ENST00000556798 RHOBTB3O94955 611 aa19.1■□□□□ 0.65
SHMT2-225ENST00000556798 ADSSP30520 456 aa19.1■□□□□ 0.65
SHMT2-225ENST00000556798 TNFSF9P41273 254 aa19.1■□□□□ 0.65
SHMT2-225ENST00000556798 FBXO22Q8NEZ5 403 aa19.1■□□□□ 0.65
SHMT2-225ENST00000556798 GDPD5Q8WTR4 605 aa19.1■□□□□ 0.65
SHMT2-225ENST00000556798 POMGNT1Q8WZA1 660 aa19.1■□□□□ 0.65
SHMT2-225ENST00000556798 TMEM206Q9H813 350 aa19.1■□□□□ 0.65
SHMT2-225ENST00000556798 HOOK1Q9UJC3 728 aaKnown RBP19.1■□□□□ 0.65
SHMT2-225ENST00000556798 PLAGL2Q9UPG8 496 aa19.1■□□□□ 0.65
SHMT2-225ENST00000556798 GOLGA6L22H0YM25 854 aa19.09■□□□□ 0.65
SHMT2-225ENST00000556798 PTGESO14684 152 aa19.09■□□□□ 0.65
SHMT2-225ENST00000556798 INPPL1O15357 1258 aa19.09■□□□□ 0.65
SHMT2-225ENST00000556798 MEFVO15553 781 aaPredicted RBP19.09■□□□□ 0.65
SHMT2-225ENST00000556798 FAM189A1O60320 539 aa19.09■□□□□ 0.65
SHMT2-225ENST00000556798 DDHD2O94830 711 aa19.09■□□□□ 0.65
SHMT2-225ENST00000556798 BMPR1AP36894 532 aa19.09■□□□□ 0.65
SHMT2-225ENST00000556798 PSMD2Q13200 908 aa19.09■□□□□ 0.65
SHMT2-225ENST00000556798 KCNB1Q14721 858 aa19.09■□□□□ 0.65
SHMT2-225ENST00000556798 BMT2Q1RMZ1 405 aa19.09■□□□□ 0.65
SHMT2-225ENST00000556798 GLRA4Q5JXX5 417 aa19.09■□□□□ 0.65
SHMT2-225ENST00000556798 ZNF280BQ86YH2 543 aa19.09■□□□□ 0.65
SHMT2-225ENST00000556798 COLGALT1Q8NBJ5 622 aa19.09■□□□□ 0.65
SHMT2-225ENST00000556798 SMARCE1Q969G3 411 aa19.09■□□□□ 0.65
SHMT2-225ENST00000556798 GUCD1Q96NT3 240 aa19.09■□□□□ 0.65
SHMT2-225ENST00000556798 SAMD11Q96NU1 681 aa19.09■□□□□ 0.65
SHMT2-225ENST00000556798 ACAP3Q96P50 834 aa19.09■□□□□ 0.65
SHMT2-225ENST00000556798 NRDE2Q9H7Z3 1164 aa19.09■□□□□ 0.65
SHMT2-225ENST00000556798 DNAJB4Q9UDY4 337 aa19.09■□□□□ 0.65
SHMT2-225ENST00000556798 RWDD3Q9Y3V2 267 aa19.09■□□□□ 0.65
SHMT2-225ENST00000556798 PCDHA5Q9Y5H7 936 aa19.09■□□□□ 0.65
SHMT2-225ENST00000556798 STYXL1Q9Y6J8 313 aa19.09■□□□□ 0.65
SHMT2-225ENST00000556798 OGTO15294 1046 aa19.08■□□□□ 0.64
SHMT2-225ENST00000556798 SMC2O95347 1197 aa19.08■□□□□ 0.64
SHMT2-225ENST00000556798 CXCL8P10145 99 aa19.08■□□□□ 0.64
SHMT2-225ENST00000556798 LAG3P18627 525 aa19.08■□□□□ 0.64
SHMT2-225ENST00000556798 ACOT2P49753 483 aa19.08■□□□□ 0.64
SHMT2-225ENST00000556798 YARSP54577 528 aaKnown RBP19.08■□□□□ 0.64
SHMT2-225ENST00000556798 CAMK4Q16566 473 aa19.08■□□□□ 0.64
SHMT2-225ENST00000556798 SLFN12LQ6IEE8 588 aa19.08■□□□□ 0.64
SHMT2-225ENST00000556798 SMYD4Q8IYR2 804 aaPredicted RBP19.08■□□□□ 0.64
SHMT2-225ENST00000556798 ZSWIM2Q8NEG5 633 aa19.08■□□□□ 0.64
SHMT2-225ENST00000556798 RSPH1Q8WYR4 309 aa19.08■□□□□ 0.64
SHMT2-225ENST00000556798 SAAL1Q96ER3 474 aa19.08■□□□□ 0.64
SHMT2-225ENST00000556798 SNX27Q96L92 541 aa19.08■□□□□ 0.64
SHMT2-225ENST00000556798 FAM193BQ96PV7 902 aaPredicted RBP19.08■□□□□ 0.64
SHMT2-225ENST00000556798 CBWD1Q9BRT8 395 aa19.08■□□□□ 0.64
SHMT2-225ENST00000556798 MTMR10Q9NXD2 777 aa19.08■□□□□ 0.64
SHMT2-225ENST00000556798 KANSL3Q9P2N6 904 aa19.08■□□□□ 0.64
SHMT2-225ENST00000556798 AGO2Q9UKV8 859 aaKnown RBP19.08■□□□□ 0.64
SHMT2-225ENST00000556798 MAPK8IP1Q9UQF2 711 aa19.08■□□□□ 0.64
SHMT2-225ENST00000556798 NT5C1B-RDH14C9J2C7 533 aa19.07■□□□□ 0.64
SHMT2-225ENST00000556798 TGFB1I1O43294 461 aa19.07■□□□□ 0.64
SHMT2-225ENST00000556798 BCAR1P56945 870 aa19.07■□□□□ 0.64
SHMT2-225ENST00000556798 GRIK3Q13003 919 aa19.07■□□□□ 0.64
SHMT2-225ENST00000556798 SLC10A6Q3KNW5 377 aa19.07■□□□□ 0.64
SHMT2-225ENST00000556798 ARMCX5Q6P1M9 558 aa19.07■□□□□ 0.64
SHMT2-225ENST00000556798 KCNT2Q6UVM3 1135 aa19.07■□□□□ 0.64
SHMT2-225ENST00000556798 ELOA2Q8IYF1 753 aaPredicted RBP19.07■□□□□ 0.64
SHMT2-225ENST00000556798 KLHL23Q8NBE8 558 aa19.07■□□□□ 0.64
SHMT2-225ENST00000556798 NOC3LQ8WTT2 800 aaKnown RBP19.07■□□□□ 0.64
SHMT2-225ENST00000556798 MYLIPQ8WY64 445 aa19.07■□□□□ 0.64
SHMT2-225ENST00000556798 ZNF558Q96NG5 402 aa19.07■□□□□ 0.64
SHMT2-225ENST00000556798 CDX2Q99626 313 aaPredicted RBP19.07■□□□□ 0.64
SHMT2-225ENST00000556798 PCIF1Q9H4Z3 704 aa19.07■□□□□ 0.64
SHMT2-225ENST00000556798 AAASQ9NRG9 546 aa19.07■□□□□ 0.64
SHMT2-225ENST00000556798 TOPORSQ9NS56 1045 aaPredicted RBP19.07■□□□□ 0.64
SHMT2-225ENST00000556798 RMND1Q9NWS8 449 aa19.07■□□□□ 0.64
SHMT2-225ENST00000556798 CACNG4Q9UBN1 327 aa19.07■□□□□ 0.64
SHMT2-225ENST00000556798 PCDHB12Q9Y5F1 795 aa19.07■□□□□ 0.64
SHMT2-225ENST00000556798 GOLGA8IPA6NC78 632 aa19.06■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms