RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 DHX9Q08211 1270 aaKnown RBP13.14□□□□□ -0.31
SHMT2-207ENST00000553837 BFSP1Q12934 665 aa13.14□□□□□ -0.31
SHMT2-207ENST00000553837 IFI16Q16666 785 aaKnown RBP13.14□□□□□ -0.31
SHMT2-207ENST00000553837 C1orf220Q5T0J3 134 aa13.14□□□□□ -0.31
SHMT2-207ENST00000553837 H2AFVQ71UI9 128 aa13.14□□□□□ -0.31
SHMT2-207ENST00000553837 TRMT1LQ7Z2T5 733 aaKnown RBP13.14□□□□□ -0.31
SHMT2-207ENST00000553837 SLFN11Q7Z7L1 901 aa13.14□□□□□ -0.31
SHMT2-207ENST00000553837 TRIM74Q86UV6 250 aa13.14□□□□□ -0.31
SHMT2-207ENST00000553837 TRIM73Q86UV7 250 aa13.14□□□□□ -0.31
SHMT2-207ENST00000553837 SYCP3Q8IZU3 236 aa13.14□□□□□ -0.31
SHMT2-207ENST00000553837 METTL13Q8N6R0 699 aa13.14□□□□□ -0.31
SHMT2-207ENST00000553837 CBWD1Q9BRT8 395 aa13.14□□□□□ -0.31
SHMT2-207ENST00000553837 SLC38A10Q9HBR0 1119 aa13.14□□□□□ -0.31
SHMT2-207ENST00000553837 OSGEPQ9NPF4 335 aa13.14□□□□□ -0.31
SHMT2-207ENST00000553837 GPRC5CQ9NQ84 441 aa13.14□□□□□ -0.31
SHMT2-207ENST00000553837 FAM114A2Q9NRY5 505 aa13.14□□□□□ -0.31
SHMT2-207ENST00000553837 SLC5A4Q9NY91 659 aa13.14□□□□□ -0.31
SHMT2-207ENST00000553837 FRMD4BQ9Y2L6 1034 aa13.14□□□□□ -0.31
SHMT2-207ENST00000553837 WDR46O15213 610 aaKnown RBP13.14□□□□□ -0.31
SHMT2-207ENST00000553837 AHCYL1O43865 530 aa13.14□□□□□ -0.31
SHMT2-207ENST00000553837 CEP104O60308 925 aa13.14□□□□□ -0.31
SHMT2-207ENST00000553837 MMEP08473 750 aa13.14□□□□□ -0.31
SHMT2-207ENST00000553837 FLT3P36888 993 aa13.14□□□□□ -0.31
SHMT2-207ENST00000553837 RPS6P62753 249 aaKnown RBP13.14□□□□□ -0.31
SHMT2-207ENST00000553837 MYL7Q01449 175 aa13.14□□□□□ -0.31
SHMT2-207ENST00000553837 GHRHRQ02643 423 aa13.14□□□□□ -0.31
SHMT2-207ENST00000553837 PPP3CAQ08209 521 aa13.14□□□□□ -0.31
SHMT2-207ENST00000553837 BLMHQ13867 455 aa13.14□□□□□ -0.31
SHMT2-207ENST00000553837 FAM133BQ5BKY9 247 aaKnown RBP13.14□□□□□ -0.31
SHMT2-207ENST00000553837 C1QTNF12Q5T7M4 302 aa13.14□□□□□ -0.31
SHMT2-207ENST00000553837 PCNX4Q63HM2 1172 aa13.14□□□□□ -0.31
SHMT2-207ENST00000553837 SLC9A9Q8IVB4 645 aa13.14□□□□□ -0.31
SHMT2-207ENST00000553837 ANKRD27Q96NW4 1050 aa13.14□□□□□ -0.31
SHMT2-207ENST00000553837 NSRP1Q9H0G5 558 aaKnown RBP13.14□□□□□ -0.31
SHMT2-207ENST00000553837 SLITRK6Q9H5Y7 841 aa13.14□□□□□ -0.31
SHMT2-207ENST00000553837 FOXN3O00409 490 aaPredicted RBP13.13□□□□□ -0.31
SHMT2-207ENST00000553837 DAPK3O43293 454 aa13.13□□□□□ -0.31
SHMT2-207ENST00000553837 RTN3O95197 1032 aaPredicted RBP13.13□□□□□ -0.31
SHMT2-207ENST00000553837 CCNE2O96020 404 aa13.13□□□□□ -0.31
SHMT2-207ENST00000553837 CHN1P15882 459 aa13.13□□□□□ -0.31
SHMT2-207ENST00000553837 SETDB1Q15047 1291 aa13.13□□□□□ -0.31
SHMT2-207ENST00000553837 ARHGAP44Q17R89 818 aa13.13□□□□□ -0.31
SHMT2-207ENST00000553837 ARHGEF19Q8IW93 802 aa13.13□□□□□ -0.31
SHMT2-207ENST00000553837 SPDYE1Q8NFV5 336 aaPredicted RBP13.13□□□□□ -0.31
SHMT2-207ENST00000553837 APEX2Q9UBZ4 518 aa13.13□□□□□ -0.31
SHMT2-207ENST00000553837 EMSYQ7Z589 1322 aa13.13□□□□□ -0.31
SHMT2-207ENST00000553837 ENO4A6NNW6 628 aa13.13□□□□□ -0.31
SHMT2-207ENST00000553837 PGRMC1O00264 195 aaKnown RBP13.13□□□□□ -0.31
SHMT2-207ENST00000553837 KRIT1O00522 736 aa13.13□□□□□ -0.31
SHMT2-207ENST00000553837 FESP07332 822 aa13.13□□□□□ -0.31
SHMT2-207ENST00000553837 ANXA13P27216 316 aa13.13□□□□□ -0.31
SHMT2-207ENST00000553837 MKRN4PQ13434 485 aaPredicted RBP13.13□□□□□ -0.31
SHMT2-207ENST00000553837 MTMR1Q13613 665 aa13.13□□□□□ -0.31
SHMT2-207ENST00000553837 PGM5Q15124 567 aa13.13□□□□□ -0.31
SHMT2-207ENST00000553837 STXBP4Q6ZWJ1 553 aa13.13□□□□□ -0.31
SHMT2-207ENST00000553837 NIPA1Q7RTP0 329 aa13.13□□□□□ -0.31
SHMT2-207ENST00000553837 DEFB132Q7Z7B7 95 aa13.13□□□□□ -0.31
SHMT2-207ENST00000553837 NT5DC3Q86UY8 548 aa13.13□□□□□ -0.31
SHMT2-207ENST00000553837 TEX9Q8N6V9 391 aa13.13□□□□□ -0.31
SHMT2-207ENST00000553837 NEK9Q8TD19 979 aa13.13□□□□□ -0.31
SHMT2-207ENST00000553837 ARHGEF26Q96DR7 871 aa13.13□□□□□ -0.31
SHMT2-207ENST00000553837 ELAC2Q9BQ52 826 aaKnown RBP13.13□□□□□ -0.31
SHMT2-207ENST00000553837 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.13□□□□□ -0.317e-8■■□□□ 13.7
SHMT2-207ENST00000553837 AP1M1Q9BXS5 423 aa13.13□□□□□ -0.31
SHMT2-207ENST00000553837 KIAA1683Q9H0B3 1180 aa13.13□□□□□ -0.31
SHMT2-207ENST00000553837 DBR1Q9UK59 544 aaKnown RBP13.13□□□□□ -0.31
SHMT2-207ENST00000553837 PNMA2Q9UL42 364 aa13.13□□□□□ -0.31
SHMT2-207ENST00000553837 TELO2Q9Y4R8 837 aa13.13□□□□□ -0.31
SHMT2-207ENST00000553837 LOXHD1Q8IVV2 1947 aa13.12□□□□□ -0.31
SHMT2-207ENST00000553837 A0A0A6YYK5 440 aaPredicted RBP13.12□□□□□ -0.31
SHMT2-207ENST00000553837 A6NHS1 94 aa13.12□□□□□ -0.31
SHMT2-207ENST00000553837 IMPDH2P12268 514 aa13.12□□□□□ -0.31
SHMT2-207ENST00000553837 MYCLP12524 364 aaPredicted RBP13.12□□□□□ -0.31
SHMT2-207ENST00000553837 ITGA4P13612 1032 aa13.12□□□□□ -0.31
SHMT2-207ENST00000553837 VCAM1P19320 739 aa13.12□□□□□ -0.31
SHMT2-207ENST00000553837 MMP13P45452 471 aa13.12□□□□□ -0.31
SHMT2-207ENST00000553837 QARSP47897 775 aaKnown RBP13.12□□□□□ -0.31
SHMT2-207ENST00000553837 CCNG1P51959 295 aa13.12□□□□□ -0.31
SHMT2-207ENST00000553837 NPEPPSP55786 919 aa13.12□□□□□ -0.31
SHMT2-207ENST00000553837 MTMR2Q13614 643 aa13.12□□□□□ -0.31
SHMT2-207ENST00000553837 PLA2G4FQ68DD2 849 aa13.12□□□□□ -0.31
SHMT2-207ENST00000553837 CIAPIN1Q6FI81 312 aa13.12□□□□□ -0.31
SHMT2-207ENST00000553837 MFN1Q8IWA4 741 aa13.12□□□□□ -0.31
SHMT2-207ENST00000553837 LRRC34Q8IZ02 419 aa13.12□□□□□ -0.31
SHMT2-207ENST00000553837 SLC20A1Q8WUM9 679 aa13.12□□□□□ -0.31
SHMT2-207ENST00000553837 SEC14L1Q92503 715 aa13.12□□□□□ -0.31
SHMT2-207ENST00000553837 ZBTB10Q96DT7 871 aa13.12□□□□□ -0.31
SHMT2-207ENST00000553837 PGM2Q96G03 612 aa13.12□□□□□ -0.31
SHMT2-207ENST00000553837 CCDC134Q9H6E4 229 aa13.12□□□□□ -0.31
SHMT2-207ENST00000553837 UTP11Q9Y3A2 253 aaKnown RBP13.12□□□□□ -0.31
SHMT2-207ENST00000553837 RIPK3Q9Y572 518 aa13.12□□□□□ -0.31
SHMT2-207ENST00000553837 ATP8B3O60423 1300 aa13.12□□□□□ -0.31
SHMT2-207ENST00000553837 PLS3P13797 630 aa13.11□□□□□ -0.31
SHMT2-207ENST00000553837 ABCB4P21439 1286 aa13.11□□□□□ -0.31
SHMT2-207ENST00000553837 YWHABP31946 246 aaKnown RBP13.11□□□□□ -0.31
SHMT2-207ENST00000553837 GCLMP48507 274 aa13.11□□□□□ -0.31
SHMT2-207ENST00000553837 VPS36Q86VN1 386 aa13.11□□□□□ -0.31
SHMT2-207ENST00000553837 GBP7Q8N8V2 638 aaPredicted RBP13.11□□□□□ -0.31
SHMT2-207ENST00000553837 SLC35G2Q8TBE7 412 aa13.11□□□□□ -0.31
SHMT2-207ENST00000553837 ATXN2LQ8WWM7 1075 aaKnown RBP13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms