RNA–Protein interactions for RNA: ENST00000550629.1

SCAF11-213, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 2

Gene SCAF11, Length 579 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-213ENST00000550629 FASTKD5Q7L8L6 764 aaKnown RBP6.66□□□□□ -1.34
SCAF11-213ENST00000550629 PRRT2Q7Z6L0 340 aaPredicted RBP6.66□□□□□ -1.34
SCAF11-213ENST00000550629 CATIPQ7Z7H3 387 aa6.66□□□□□ -1.34
SCAF11-213ENST00000550629 CHMP4CQ96CF2 233 aa6.66□□□□□ -1.34
SCAF11-213ENST00000550629 OPTNQ96CV9 577 aa6.66□□□□□ -1.34
SCAF11-213ENST00000550629 ZNF274Q96GC6 653 aaPredicted RBP6.66□□□□□ -1.34
SCAF11-213ENST00000550629 WNK4Q96J92 1243 aa6.66□□□□□ -1.34
SCAF11-213ENST00000550629 C12orf42Q96LP6 360 aa6.66□□□□□ -1.34
SCAF11-213ENST00000550629 FEZ1Q99689 392 aa6.66□□□□□ -1.34
SCAF11-213ENST00000550629 TMEM47Q9BQJ4 181 aa6.66□□□□□ -1.34
SCAF11-213ENST00000550629 SGPP1Q9BX95 441 aa6.66□□□□□ -1.34
SCAF11-213ENST00000550629 CLIP2Q9UDT6 1046 aa6.66□□□□□ -1.34
SCAF11-213ENST00000550629 CGGBP1Q9UFW8 167 aaPredicted RBP6.66□□□□□ -1.34
SCAF11-213ENST00000550629 ABT1Q9ULW3 272 aaKnown RBP6.66□□□□□ -1.34
SCAF11-213ENST00000550629 FZD1Q9UP38 647 aa6.66□□□□□ -1.34
SCAF11-213ENST00000550629 NID2Q14112 1375 aa6.66□□□□□ -1.34
SCAF11-213ENST00000550629 CCDC196A0A1B0GTZ2 297 aa6.65□□□□□ -1.34
SCAF11-213ENST00000550629 TEX51A0A1B0GUA7 166 aa6.65□□□□□ -1.34
SCAF11-213ENST00000550629 A0A1W2PRG0 241 aa6.65□□□□□ -1.34
SCAF11-213ENST00000550629 CCDC69A6NI79 296 aa6.65□□□□□ -1.34
SCAF11-213ENST00000550629 TRIM75PA6NK02 468 aa6.65□□□□□ -1.34
SCAF11-213ENST00000550629 F5H6K3 240 aa6.65□□□□□ -1.34
SCAF11-213ENST00000550629 SMAD7O15105 426 aaKnown RBP6.65□□□□□ -1.34
SCAF11-213ENST00000550629 PLA2G6O60733 806 aa6.65□□□□□ -1.34
SCAF11-213ENST00000550629 SEMA7AO75326 666 aa6.65□□□□□ -1.34
SCAF11-213ENST00000550629 SSBP05455 408 aaKnown RBP eCLIP6.65□□□□□ -1.34
SCAF11-213ENST00000550629 SNHG28P0DPA3 235 aa6.65□□□□□ -1.34
SCAF11-213ENST00000550629 HOXA5P20719 270 aa6.65□□□□□ -1.34
SCAF11-213ENST00000550629 KIF5BP33176 963 aa6.65□□□□□ -1.34
SCAF11-213ENST00000550629 ARL4AP40617 200 aa6.65□□□□□ -1.34
SCAF11-213ENST00000550629 ECE1P42892 770 aa6.65□□□□□ -1.34
SCAF11-213ENST00000550629 DLG4P78352 724 aa6.65□□□□□ -1.34
SCAF11-213ENST00000550629 MVKQ03426 396 aa6.65□□□□□ -1.34
SCAF11-213ENST00000550629 KLRC3Q07444 240 aa6.65□□□□□ -1.34
SCAF11-213ENST00000550629 TROAPQ12815 778 aa6.65□□□□□ -1.34
SCAF11-213ENST00000550629 NOGQ13253 232 aa6.65□□□□□ -1.34
SCAF11-213ENST00000550629 LAPTM5Q13571 262 aa6.65□□□□□ -1.34
SCAF11-213ENST00000550629 TOB2Q14106 344 aaPredicted RBP6.65□□□□□ -1.34
SCAF11-213ENST00000550629 DPY19L1Q2PZI1 675 aa6.65□□□□□ -1.34
SCAF11-213ENST00000550629 GPATCH4Q5T3I0 446 aaKnown RBP6.65□□□□□ -1.34
SCAF11-213ENST00000550629 APOA5Q6Q788 366 aa6.65□□□□□ -1.34
SCAF11-213ENST00000550629 CYP2R1Q6VVX0 501 aa6.65□□□□□ -1.34
SCAF11-213ENST00000550629 CHST3Q7LGC8 479 aa6.65□□□□□ -1.34
SCAF11-213ENST00000550629 JAMLQ86YT9 394 aa6.65□□□□□ -1.34
SCAF11-213ENST00000550629 RASAL3Q86YV0 1011 aa6.65□□□□□ -1.34
SCAF11-213ENST00000550629 ARHGEF39Q8N4T4 335 aa6.65□□□□□ -1.34
SCAF11-213ENST00000550629 ZNF513Q8N8E2 541 aaPredicted RBP6.65□□□□□ -1.34
SCAF11-213ENST00000550629 ACER1Q8TDN7 264 aa6.65□□□□□ -1.34
SCAF11-213ENST00000550629 DCAF4Q8WV16 495 aa6.65□□□□□ -1.34
SCAF11-213ENST00000550629 ZSCAN31Q96LW9 406 aaPredicted RBP6.65□□□□□ -1.34
SCAF11-213ENST00000550629 PTCHD1Q96NR3 888 aa6.65□□□□□ -1.34
SCAF11-213ENST00000550629 LZTS2Q9BRK4 669 aa6.65□□□□□ -1.34
SCAF11-213ENST00000550629 ZCCHC4Q9H5U6 513 aa6.65□□□□□ -1.34
SCAF11-213ENST00000550629 VCPKMTQ9H867 229 aa6.65□□□□□ -1.34
SCAF11-213ENST00000550629 GCM1Q9NP62 436 aa6.65□□□□□ -1.34
SCAF11-213ENST00000550629 ZCCHC17Q9NP64 241 aaKnown RBP6.65□□□□□ -1.34
SCAF11-213ENST00000550629 TMOD4Q9NZQ9 345 aa6.65□□□□□ -1.34
SCAF11-213ENST00000550629 LIMCH1Q9UPQ0 1083 aa6.65□□□□□ -1.34
SCAF11-213ENST00000550629 SLC45A1Q9Y2W3 748 aa6.65□□□□□ -1.34
SCAF11-213ENST00000550629 MYH8P13535 1937 aa6.65□□□□□ -1.34
SCAF11-213ENST00000550629 ATAD5Q96QE3 1844 aa6.64□□□□□ -1.35
SCAF11-213ENST00000550629 KLF18A0A0U1RQI7 1052 aa6.64□□□□□ -1.35
SCAF11-213ENST00000550629 ANKRD34BA5PLL1 514 aa6.64□□□□□ -1.35
SCAF11-213ENST00000550629 MANSC4A6NHS7 340 aaPredicted RBP6.64□□□□□ -1.35
SCAF11-213ENST00000550629 STXBP3O00186 592 aa6.64□□□□□ -1.35
SCAF11-213ENST00000550629 HRKO00198 91 aa6.64□□□□□ -1.35
SCAF11-213ENST00000550629 WDR46O15213 610 aaKnown RBP6.64□□□□□ -1.35
SCAF11-213ENST00000550629 ZBTB43O43298 467 aa6.64□□□□□ -1.35
SCAF11-213ENST00000550629 DHX16O60231 1041 aaKnown RBP6.64□□□□□ -1.35
SCAF11-213ENST00000550629 NDUFB10O96000 172 aa6.64□□□□□ -1.35
SCAF11-213ENST00000550629 MSL3P1P0C860 447 aa6.64□□□□□ -1.35
SCAF11-213ENST00000550629 PDHBP11177 359 aa6.64□□□□□ -1.35
SCAF11-213ENST00000550629 CPA1P15085 419 aa6.64□□□□□ -1.35
SCAF11-213ENST00000550629 VCAM1P19320 739 aa6.64□□□□□ -1.35
SCAF11-213ENST00000550629 SMARCA1P28370 1054 aa6.64□□□□□ -1.35
SCAF11-213ENST00000550629 HOXA7P31268 230 aaPredicted RBP6.64□□□□□ -1.35
SCAF11-213ENST00000550629 GNAQP50148 359 aa6.64□□□□□ -1.35
SCAF11-213ENST00000550629 AK2P54819 239 aa6.64□□□□□ -1.35
SCAF11-213ENST00000550629 C1QTNF8P60827 252 aa6.64□□□□□ -1.35
SCAF11-213ENST00000550629 YBX1P67809 324 aaKnown RBP6.64□□□□□ -1.35
SCAF11-213ENST00000550629 SRSF3P84103 164 aaKnown RBP6.64□□□□□ -1.35
SCAF11-213ENST00000550629 ZNF543Q08ER8 600 aa6.64□□□□□ -1.35
SCAF11-213ENST00000550629 SREBF2Q12772 1141 aa6.64□□□□□ -1.35
SCAF11-213ENST00000550629 PABPC4Q13310 644 aaKnown RBP eCLIP6.64□□□□□ -1.35
SCAF11-213ENST00000550629 GNL2Q13823 731 aaKnown RBP6.64□□□□□ -1.35
SCAF11-213ENST00000550629 DEFB115Q30KQ5 88 aa6.64□□□□□ -1.35
SCAF11-213ENST00000550629 ASPRV1Q53RT3 343 aa6.64□□□□□ -1.35
SCAF11-213ENST00000550629 SLFN13Q68D06 897 aa6.64□□□□□ -1.35
SCAF11-213ENST00000550629 LRRC47Q8N1G4 583 aaKnown RBP6.64□□□□□ -1.35
SCAF11-213ENST00000550629 SNX21Q969T3 373 aa6.64□□□□□ -1.35
SCAF11-213ENST00000550629 RCC1LQ96I51 464 aaKnown RBP6.64□□□□□ -1.35
SCAF11-213ENST00000550629 TINF2Q9BSI4 451 aa6.64□□□□□ -1.35
SCAF11-213ENST00000550629 KLHL14Q9P2G3 628 aa6.64□□□□□ -1.35
SCAF11-213ENST00000550629 FRMD4AQ9P2Q2 1039 aaPredicted RBP6.64□□□□□ -1.35
SCAF11-213ENST00000550629 APEX2Q9UBZ4 518 aa6.64□□□□□ -1.35
SCAF11-213ENST00000550629 MYPNQ86TC9 1320 aa6.64□□□□□ -1.35
SCAF11-213ENST00000550629 A0A1W2PQ27 194 aa6.63□□□□□ -1.35
SCAF11-213ENST00000550629 A0A1W2PQ64 194 aa6.63□□□□□ -1.35
SCAF11-213ENST00000550629 A0A1W2PQC6 194 aa6.63□□□□□ -1.35
SCAF11-213ENST00000550629 A0A1W2PQD8 194 aa6.63□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms