RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 USP38Q8NB14 1042 aa15.98■□□□□ 0.15
CUX1-214ENST00000550008 CCDC197Q8NCU1 140 aa15.98■□□□□ 0.15
CUX1-214ENST00000550008 LRRC8CQ8TDW0 803 aa15.98■□□□□ 0.15
CUX1-214ENST00000550008 SLC35C1Q96A29 364 aa15.98■□□□□ 0.15
CUX1-214ENST00000550008 INPP5FQ9Y2H2 1132 aa15.98■□□□□ 0.15
CUX1-214ENST00000550008 CHD2O14647 1828 aaKnown RBP15.98■□□□□ 0.15
CUX1-214ENST00000550008 RGS7P49802 495 aa15.98■□□□□ 0.15
CUX1-214ENST00000550008 NOP14P78316 857 aaKnown RBP15.98■□□□□ 0.15
CUX1-214ENST00000550008 SURF1Q15526 300 aa15.98■□□□□ 0.15
CUX1-214ENST00000550008 SPOPLQ6IQ16 392 aa15.98■□□□□ 0.15
CUX1-214ENST00000550008 WDR59Q6PJI9 974 aa15.98■□□□□ 0.15
CUX1-214ENST00000550008 RBM46Q8TBY0 533 aaKnown RBP15.98■□□□□ 0.15
CUX1-214ENST00000550008 MCUR1Q96AQ8 359 aa15.98■□□□□ 0.15
CUX1-214ENST00000550008 ANKZF1Q9H8Y5 726 aa15.98■□□□□ 0.15
CUX1-214ENST00000550008 DDNO94850 711 aaPredicted RBP15.98■□□□□ 0.15
CUX1-214ENST00000550008 MMEP08473 750 aa15.98■□□□□ 0.15
CUX1-214ENST00000550008 GPS1Q13098 491 aa15.98■□□□□ 0.15
CUX1-214ENST00000550008 ZC3H18Q86VM9 953 aaKnown RBP15.98■□□□□ 0.15
CUX1-214ENST00000550008 IL31RAQ8NI17 732 aa15.98■□□□□ 0.15
CUX1-214ENST00000550008 PYROXD1Q8WU10 500 aa15.98■□□□□ 0.15
CUX1-214ENST00000550008 PLSCR1O15162 318 aa15.98■□□□□ 0.15
CUX1-214ENST00000550008 ITKQ08881 620 aa15.98■□□□□ 0.15
CUX1-214ENST00000550008 CCDC125Q86Z20 511 aa15.98■□□□□ 0.15
CUX1-214ENST00000550008 SPATA20Q8TB22 786 aa15.98■□□□□ 0.15
CUX1-214ENST00000550008 KIF12Q96FN5 646 aa15.98■□□□□ 0.15
CUX1-214ENST00000550008 C9orf72Q96LT7 481 aa15.98■□□□□ 0.15
CUX1-214ENST00000550008 CYP26B1Q9NR63 512 aa15.98■□□□□ 0.15
CUX1-214ENST00000550008 TJP3O95049 919 aa15.97■□□□□ 0.15
CUX1-214ENST00000550008 ZBED1O96006 694 aa15.97■□□□□ 0.15
CUX1-214ENST00000550008 TCF7P36402 384 aaPredicted RBP15.97■□□□□ 0.15
CUX1-214ENST00000550008 SLC12A3P55017 1021 aa15.97■□□□□ 0.15
CUX1-214ENST00000550008 ARPP19P56211 112 aa15.97■□□□□ 0.15
CUX1-214ENST00000550008 KRT17Q04695 432 aa15.97■□□□□ 0.15
CUX1-214ENST00000550008 CFAP36Q96G28 342 aa15.97■□□□□ 0.15
CUX1-214ENST00000550008 ZIM3Q96PE6 472 aa15.97■□□□□ 0.15
CUX1-214ENST00000550008 WDR18Q9BV38 432 aa15.97■□□□□ 0.15
CUX1-214ENST00000550008 AGAP1Q9UPQ3 857 aa15.97■□□□□ 0.15
CUX1-214ENST00000550008 KCPQ6ZWJ8 1503 aa15.97■□□□□ 0.15
CUX1-214ENST00000550008 CHRNA3P32297 505 aa15.97■□□□□ 0.15
CUX1-214ENST00000550008 ABCD1P33897 745 aa15.97■□□□□ 0.15
CUX1-214ENST00000550008 CNTN2Q02246 1040 aa15.97■□□□□ 0.15
CUX1-214ENST00000550008 VPS52Q8N1B4 723 aa15.97■□□□□ 0.15
CUX1-214ENST00000550008 LMO7Q8WWI1 1683 aa15.97■□□□□ 0.15
CUX1-214ENST00000550008 STAMBPO95630 424 aa15.97■□□□□ 0.15
CUX1-214ENST00000550008 TBXAS1P24557 533 aaPredicted RBP15.97■□□□□ 0.15
CUX1-214ENST00000550008 CLCN3P51790 818 aa15.97■□□□□ 0.15
CUX1-214ENST00000550008 GABPAQ06546 454 aa15.97■□□□□ 0.15
CUX1-214ENST00000550008 MIIPQ5JXC2 388 aa15.97■□□□□ 0.15
CUX1-214ENST00000550008 RHOT1Q8IXI2 618 aa15.97■□□□□ 0.15
CUX1-214ENST00000550008 EXOC8Q8IYI6 725 aa15.97■□□□□ 0.15
CUX1-214ENST00000550008 WNT8AQ9H1J5 351 aa15.97■□□□□ 0.15
CUX1-214ENST00000550008 HSD3B7Q9H2F3 369 aa15.97■□□□□ 0.15
CUX1-214ENST00000550008 SLITRK6Q9H5Y7 841 aa15.97■□□□□ 0.15
CUX1-214ENST00000550008 L1RE1Q9UN81 338 aa15.97■□□□□ 0.15
CUX1-214ENST00000550008 DYNC1LI2O43237 492 aaPredicted RBP15.96■□□□□ 0.15
CUX1-214ENST00000550008 RFX1P22670 979 aa15.96■□□□□ 0.15
CUX1-214ENST00000550008 ADORA2BP29275 332 aa15.96■□□□□ 0.15
CUX1-214ENST00000550008 LRRC55Q6ZSA7 311 aa15.96■□□□□ 0.15
CUX1-214ENST00000550008 PDIK1LQ8N165 341 aa15.96■□□□□ 0.15
CUX1-214ENST00000550008 ZNF507Q8TCN5 953 aa15.96■□□□□ 0.15
CUX1-214ENST00000550008 KAT5Q92993 513 aa15.96■□□□□ 0.15
CUX1-214ENST00000550008 MED15Q96RN5 788 aa15.96■□□□□ 0.15
CUX1-214ENST00000550008 AGO4Q9HCK5 861 aaKnown RBP15.96■□□□□ 0.15
CUX1-214ENST00000550008 TMEM8AQ9HCN3 771 aa15.96■□□□□ 0.15
CUX1-214ENST00000550008 PXMP2Q9NR77 195 aa15.96■□□□□ 0.15
CUX1-214ENST00000550008 H3BQF6 201 aa15.96■□□□□ 0.15
CUX1-214ENST00000550008 CALCAP01258 141 aa15.96■□□□□ 0.15
CUX1-214ENST00000550008 TMEM253P0C7T8 217 aa15.96■□□□□ 0.15
CUX1-214ENST00000550008 MSH2P43246 934 aa15.96■□□□□ 0.15
CUX1-214ENST00000550008 PDE1BQ01064 536 aa15.96■□□□□ 0.15
CUX1-214ENST00000550008 SMTNL2Q2TAL5 461 aa15.96■□□□□ 0.15
CUX1-214ENST00000550008 KIAA1755Q5JYT7 1200 aa15.96■□□□□ 0.15
CUX1-214ENST00000550008 ANKEF1Q9NU02 776 aa15.96■□□□□ 0.15
CUX1-214ENST00000550008 TOPAZ1Q8N9V7 1692 aa15.96■□□□□ 0.15
CUX1-214ENST00000550008 F8VZ95 297 aa15.96■□□□□ 0.15
CUX1-214ENST00000550008 TROVE2P10155 538 aaKnown RBP eCLIP15.96■□□□□ 0.15
CUX1-214ENST00000550008 PAPD7Q5XG87 772 aaKnown RBP15.96■□□□□ 0.15
CUX1-214ENST00000550008 DNAAF3Q8N9W5 541 aa15.96■□□□□ 0.15
CUX1-214ENST00000550008 MCEEQ96PE7 176 aa15.96■□□□□ 0.15
CUX1-214ENST00000550008 KCNMB3Q9NPA1 279 aa15.96■□□□□ 0.15
CUX1-214ENST00000550008 IGSF9BQ9UPX0 1349 aa15.96■□□□□ 0.14
CUX1-214ENST00000550008 MYO1CO00159 1063 aa15.96■□□□□ 0.14
CUX1-214ENST00000550008 XPOTO43592 962 aaKnown RBP15.96■□□□□ 0.14
CUX1-214ENST00000550008 CBWD6Q4V339 395 aa15.96■□□□□ 0.14
CUX1-214ENST00000550008 CBWD3Q5JTY5 395 aa15.96■□□□□ 0.14
CUX1-214ENST00000550008 CBWD5Q5RIA9 395 aa15.96■□□□□ 0.14
CUX1-214ENST00000550008 SLC47A2Q86VL8 602 aa15.96■□□□□ 0.14
CUX1-214ENST00000550008 ATG4AQ8WYN0 398 aa15.96■□□□□ 0.14
CUX1-214ENST00000550008 TBC1D31Q96DN5 1066 aa15.96■□□□□ 0.14
CUX1-214ENST00000550008 SIK3Q9Y2K2 1263 aa15.96■□□□□ 0.14
CUX1-214ENST00000550008 SNX9Q9Y5X1 595 aa15.96■□□□□ 0.14
CUX1-214ENST00000550008 PFASO15067 1338 aa15.95■□□□□ 0.14
CUX1-214ENST00000550008 SASH3O75995 380 aa15.95■□□□□ 0.14
CUX1-214ENST00000550008 ITGA4P13612 1032 aa15.95■□□□□ 0.14
CUX1-214ENST00000550008 ARL4AP40617 200 aa15.95■□□□□ 0.14
CUX1-214ENST00000550008 PGM5Q15124 567 aa15.95■□□□□ 0.14
CUX1-214ENST00000550008 SIX6OS1Q8N1H7 587 aa15.95■□□□□ 0.14
CUX1-214ENST00000550008 SLC16A10Q8TF71 515 aa15.95■□□□□ 0.14
CUX1-214ENST00000550008 SYN2Q92777 582 aaPredicted RBP15.95■□□□□ 0.14
CUX1-214ENST00000550008 MKL1Q969V6 931 aa15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms