RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 KRT5P13647 590 aa15.67■□□□□ 0.1
CLIP1-216ENST00000541410 TCP1P17987 556 aaKnown RBP15.67■□□□□ 0.1
CLIP1-216ENST00000541410 GPC3P51654 580 aa15.67■□□□□ 0.1
CLIP1-216ENST00000541410 ARHGAP1Q07960 439 aa15.67■□□□□ 0.1
CLIP1-216ENST00000541410 EFCAB12Q6NXP0 572 aa15.67■□□□□ 0.1
CLIP1-216ENST00000541410 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15.67■□□□□ 0.1
CLIP1-216ENST00000541410 GSPT2Q8IYD1 628 aaKnown RBP15.67■□□□□ 0.1
CLIP1-216ENST00000541410 C2orf69Q8N8R5 385 aa15.67■□□□□ 0.1
CLIP1-216ENST00000541410 HDAC7Q8WUI4 952 aa15.67■□□□□ 0.1
CLIP1-216ENST00000541410 AFG1LQ8WV93 481 aa15.67■□□□□ 0.1
CLIP1-216ENST00000541410 FAM167AQ96KS9 214 aa15.67■□□□□ 0.1
CLIP1-216ENST00000541410 ABCB6Q9NP58 842 aa15.67■□□□□ 0.1
CLIP1-216ENST00000541410 ST7Q9NRC1 585 aa15.67■□□□□ 0.1
CLIP1-216ENST00000541410 SUCLA2Q9P2R7 463 aaPredicted RBP15.67■□□□□ 0.1
CLIP1-216ENST00000541410 COQ4Q9Y3A0 265 aa15.67■□□□□ 0.1
CLIP1-216ENST00000541410 B4GALT5O43286 388 aa15.67■□□□□ 0.1
CLIP1-216ENST00000541410 SSTR3P32745 418 aaPredicted RBP15.67■□□□□ 0.1
CLIP1-216ENST00000541410 MFAP3P55082 362 aa15.67■□□□□ 0.1
CLIP1-216ENST00000541410 SLC7A5Q01650 507 aa15.67■□□□□ 0.1
CLIP1-216ENST00000541410 SPRYD7Q5W111 196 aa15.67■□□□□ 0.1
CLIP1-216ENST00000541410 GPR142Q7Z601 462 aa15.67■□□□□ 0.1
CLIP1-216ENST00000541410 DAAM2Q86T65 1068 aa15.67■□□□□ 0.1
CLIP1-216ENST00000541410 FAM71AQ8IYT1 594 aa15.67■□□□□ 0.1
CLIP1-216ENST00000541410 SPATA4Q8NEY3 305 aa15.67■□□□□ 0.1
CLIP1-216ENST00000541410 OR5B17Q8NGF7 314 aa15.67■□□□□ 0.1
CLIP1-216ENST00000541410 EPS8L1Q8TE68 723 aa15.67■□□□□ 0.1
CLIP1-216ENST00000541410 MORC4Q8TE76 937 aa15.67■□□□□ 0.1
CLIP1-216ENST00000541410 SMARCAD1Q9H4L7 1026 aa15.67■□□□□ 0.1
CLIP1-216ENST00000541410 ARFGAP3Q9NP61 516 aa15.67■□□□□ 0.1
CLIP1-216ENST00000541410 A0A0B4J269 797 aa15.66■□□□□ 0.1
CLIP1-216ENST00000541410 INO80B-WBP1J3KQ70 363 aa15.66■□□□□ 0.1
CLIP1-216ENST00000541410 KCNK3O14649 394 aa15.66■□□□□ 0.1
CLIP1-216ENST00000541410 CLDN3O15551 220 aa15.66■□□□□ 0.1
CLIP1-216ENST00000541410 MSCO60682 206 aa15.66■□□□□ 0.1
CLIP1-216ENST00000541410 SNAI1O95863 264 aaPredicted RBP15.66■□□□□ 0.1
CLIP1-216ENST00000541410 FTLP02792 175 aaPredicted RBP15.66■□□□□ 0.1
CLIP1-216ENST00000541410 CHRNB2P17787 502 aa15.66■□□□□ 0.1
CLIP1-216ENST00000541410 RFX1P22670 979 aa15.66■□□□□ 0.1
CLIP1-216ENST00000541410 MAMDC4Q6UXC1 1216 aa15.66■□□□□ 0.1
CLIP1-216ENST00000541410 PLPPR4Q7Z2D5 763 aa15.66■□□□□ 0.1
CLIP1-216ENST00000541410 LRRC57Q8N9N7 239 aa15.66■□□□□ 0.1
CLIP1-216ENST00000541410 CTNNBL1Q8WYA6 563 aaPredicted RBP15.66■□□□□ 0.1
CLIP1-216ENST00000541410 GDAP1L1Q96MZ0 367 aa15.66■□□□□ 0.1
CLIP1-216ENST00000541410 INO80BQ9C086 356 aaPredicted RBP15.66■□□□□ 0.1
CLIP1-216ENST00000541410 NMRK2Q9NPI5 230 aa15.66■□□□□ 0.1
CLIP1-216ENST00000541410 CDKN2AIPQ9NXV6 580 aaPredicted RBP15.66■□□□□ 0.1
CLIP1-216ENST00000541410 CPA4Q9UI42 421 aa15.66■□□□□ 0.1
CLIP1-216ENST00000541410 STYXL1Q9Y6J8 313 aa15.66■□□□□ 0.1
CLIP1-216ENST00000541410 MGAMO43451 1857 aa15.66■□□□□ 0.1
CLIP1-216ENST00000541410 KAT6AQ92794 2004 aa15.66■□□□□ 0.1
CLIP1-216ENST00000541410 TBC1D8O95759 1140 aa15.65■□□□□ 0.1
CLIP1-216ENST00000541410 HLA-DRAP01903 254 aa15.65■□□□□ 0.1
CLIP1-216ENST00000541410 PRLRP16471 622 aa15.65■□□□□ 0.1
CLIP1-216ENST00000541410 PIK3CAP42336 1068 aa15.65■□□□□ 0.1
CLIP1-216ENST00000541410 PSMD6Q15008 389 aa15.65■□□□□ 0.1
CLIP1-216ENST00000541410 LONRF2Q1L5Z9 754 aa15.65■□□□□ 0.1
CLIP1-216ENST00000541410 IER5Q5VY09 327 aa15.65■□□□□ 0.1
CLIP1-216ENST00000541410 CST9Q5W186 159 aa15.65■□□□□ 0.1
CLIP1-216ENST00000541410 USP37Q86T82 979 aa15.65■□□□□ 0.1
CLIP1-216ENST00000541410 TMEM130Q8N3G9 435 aa15.65■□□□□ 0.1
CLIP1-216ENST00000541410 SHC3Q92529 594 aa15.65■□□□□ 0.1
CLIP1-216ENST00000541410 LRRC1Q9BTT6 524 aa15.65■□□□□ 0.1
CLIP1-216ENST00000541410 MINDY3Q9H8M7 445 aa15.65■□□□□ 0.1
CLIP1-216ENST00000541410 RBM12Q9NTZ6 932 aaKnown RBP15.65■□□□□ 0.1
CLIP1-216ENST00000541410 NOCTQ9UK39 431 aaKnown RBP15.65■□□□□ 0.1
CLIP1-216ENST00000541410 BUB1BO60566 1050 aaPredicted RBP15.65■□□□□ 0.1
CLIP1-216ENST00000541410 VNN1O95497 513 aa15.65■□□□□ 0.1
CLIP1-216ENST00000541410 LGALS2P05162 132 aa15.65■□□□□ 0.1
CLIP1-216ENST00000541410 PRKCBP05771 671 aa15.65■□□□□ 0.1
CLIP1-216ENST00000541410 INSRRP14616 1297 aa15.65■□□□□ 0.1
CLIP1-216ENST00000541410 TMEM132AQ24JP5 1023 aa15.65■□□□□ 0.1
CLIP1-216ENST00000541410 PRAMEF19Q5SWL8 479 aa15.65■□□□□ 0.1
CLIP1-216ENST00000541410 SLFN12LQ6IEE8 588 aa15.65■□□□□ 0.1
CLIP1-216ENST00000541410 COG5Q9UP83 839 aa15.65■□□□□ 0.1
CLIP1-216ENST00000541410 ADGRA2Q96PE1 1338 aa15.65■□□□□ 0.1
CLIP1-216ENST00000541410 CCDC151A5D8V7 595 aa15.64■□□□□ 0.09
CLIP1-216ENST00000541410 BTNL10A8MVZ5 291 aa15.64■□□□□ 0.09
CLIP1-216ENST00000541410 PMM2O15305 246 aa15.64■□□□□ 0.09
CLIP1-216ENST00000541410 C4BPAP04003 597 aaKnown RBP15.64■□□□□ 0.09
CLIP1-216ENST00000541410 IQCF3P0C7M6 154 aa15.64■□□□□ 0.09
CLIP1-216ENST00000541410 CYP11B1P15538 503 aa15.64■□□□□ 0.09
CLIP1-216ENST00000541410 RPS6KA1Q15418 735 aa15.64■□□□□ 0.09
CLIP1-216ENST00000541410 C15orf39Q6ZRI6 1047 aa15.64■□□□□ 0.09
CLIP1-216ENST00000541410 PEX26Q7Z412 305 aa15.64■□□□□ 0.09
CLIP1-216ENST00000541410 ANKRD23Q86SG2 305 aa15.64■□□□□ 0.09
CLIP1-216ENST00000541410 THNSL1Q8IYQ7 743 aa15.64■□□□□ 0.09
CLIP1-216ENST00000541410 CEP120Q8N960 986 aa15.64■□□□□ 0.09
CLIP1-216ENST00000541410 TMEM134Q9H6X4 195 aa15.64■□□□□ 0.09
CLIP1-216ENST00000541410 C1orf112Q9NSG2 853 aa15.64■□□□□ 0.09
CLIP1-216ENST00000541410 KCNG1Q9UIX4 513 aa15.64■□□□□ 0.09
CLIP1-216ENST00000541410 ZHX1Q9UKY1 873 aaPredicted RBP15.64■□□□□ 0.09
CLIP1-216ENST00000541410 RAB21Q9UL25 225 aa15.64■□□□□ 0.09
CLIP1-216ENST00000541410 DIS3Q9Y2L1 958 aaKnown RBP15.64■□□□□ 0.09
CLIP1-216ENST00000541410 UMODL1Q5DID0 1318 aa15.64■□□□□ 0.09
CLIP1-216ENST00000541410 BRCA2P51587 3418 aa15.64■□□□□ 0.09
CLIP1-216ENST00000541410 TMEM110-MUSTN1A8MSY1 372 aa15.64■□□□□ 0.09
CLIP1-216ENST00000541410 KIF4AO95239 1232 aa15.64■□□□□ 0.09
CLIP1-216ENST00000541410 PIGRP01833 764 aa15.64■□□□□ 0.09
CLIP1-216ENST00000541410 ANXA13P27216 316 aa15.64■□□□□ 0.09
CLIP1-216ENST00000541410 PAFAH1B1P43034 410 aa15.64■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms