RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 EDRF1Q3B7T1 1238 aa14.98□□□□□ -0.01
USP3-204ENST00000540797 ALKBH8Q96BT7 664 aaKnown RBP14.98□□□□□ -0.01
USP3-204ENST00000540797 BAG5Q9UL15 447 aa14.98□□□□□ -0.01
USP3-204ENST00000540797 PITPNM2Q9BZ72 1349 aa14.98□□□□□ -0.01
USP3-204ENST00000540797 CDH6P55285 790 aa14.98□□□□□ -0.01
USP3-204ENST00000540797 SLC12A1Q13621 1099 aa14.98□□□□□ -0.01
USP3-204ENST00000540797 NUDT18Q6ZVK8 323 aa14.98□□□□□ -0.01
USP3-204ENST00000540797 RFFLQ8WZ73 363 aa14.98□□□□□ -0.01
USP3-204ENST00000540797 LIMA1Q9UHB6 759 aaKnown RBP14.98□□□□□ -0.01
USP3-204ENST00000540797 ARHGAP23Q9P227 1491 aa14.98□□□□□ -0.01
USP3-204ENST00000540797 PDHXO00330 501 aa14.98□□□□□ -0.01
USP3-204ENST00000540797 ACSL3O95573 720 aa14.98□□□□□ -0.01
USP3-204ENST00000540797 ALDH1A1P00352 501 aa14.98□□□□□ -0.01
USP3-204ENST00000540797 CYBBP04839 570 aa14.98□□□□□ -0.01
USP3-204ENST00000540797 CYP11B2P19099 503 aa14.98□□□□□ -0.01
USP3-204ENST00000540797 RGS7P49802 495 aa14.98□□□□□ -0.01
USP3-204ENST00000540797 CASP7P55210 303 aa14.98□□□□□ -0.01
USP3-204ENST00000540797 TARS2Q9BW92 718 aaKnown RBP14.98□□□□□ -0.01
USP3-204ENST00000540797 STK33Q9BYT3 514 aa14.98□□□□□ -0.01
USP3-204ENST00000540797 MAGEB5Q9BZ81 275 aa14.98□□□□□ -0.01
USP3-204ENST00000540797 WNT8AQ9H1J5 351 aa14.98□□□□□ -0.01
USP3-204ENST00000540797 CAPN11Q9UMQ6 739 aa14.98□□□□□ -0.01
USP3-204ENST00000540797 REREQ9P2R6 1566 aa14.98□□□□□ -0.01
USP3-204ENST00000540797 ANO9A1A5B4 782 aa14.97□□□□□ -0.01
USP3-204ENST00000540797 ADM5C9JUS6 153 aa14.97□□□□□ -0.01
USP3-204ENST00000540797 EXTL3O43909 919 aa14.97□□□□□ -0.01
USP3-204ENST00000540797 RTN2O75298 545 aa14.97□□□□□ -0.01
USP3-204ENST00000540797 SNRPFP62306 86 aaKnown RBP14.97□□□□□ -0.01
USP3-204ENST00000540797 DCP1BQ8IZD4 617 aaKnown RBP14.97□□□□□ -0.01
USP3-204ENST00000540797 TAF1BQ53T94 588 aaPredicted RBP14.97□□□□□ -0.01
USP3-204ENST00000540797 ZNF484Q5JVG2 852 aa14.97□□□□□ -0.01
USP3-204ENST00000540797 DACT2Q5SW24 774 aa14.97□□□□□ -0.01
USP3-204ENST00000540797 TTC19Q6DKK2 380 aaPredicted RBP14.97□□□□□ -0.01
USP3-204ENST00000540797 ITPRIPL1Q6GPH6 555 aa14.97□□□□□ -0.01
USP3-204ENST00000540797 BCAS4Q8TDM0 211 aa14.97□□□□□ -0.01
USP3-204ENST00000540797 HVCN1Q96D96 273 aa14.97□□□□□ -0.01
USP3-204ENST00000540797 ASIC4Q96FT7 647 aa14.97□□□□□ -0.01
USP3-204ENST00000540797 SEPT5Q99719 369 aaPredicted RBP14.97□□□□□ -0.01
USP3-204ENST00000540797 CXCL11O14625 94 aa14.97□□□□□ -0.01
USP3-204ENST00000540797 SRGAP2O75044 1071 aa14.97□□□□□ -0.01
USP3-204ENST00000540797 SCP2P22307 547 aa14.97□□□□□ -0.01
USP3-204ENST00000540797 SULT1E1P49888 294 aa14.97□□□□□ -0.01
USP3-204ENST00000540797 SATB1Q01826 763 aa14.97□□□□□ -0.01
USP3-204ENST00000540797 CDKL3Q8IVW4 592 aaPredicted RBP14.97□□□□□ -0.01
USP3-204ENST00000540797 RBBP8NLQ8NC74 664 aaPredicted RBP14.97□□□□□ -0.01
USP3-204ENST00000540797 ARRDC4Q8NCT1 418 aa14.97□□□□□ -0.01
USP3-204ENST00000540797 RSRC1Q96IZ7 334 aaKnown RBP14.97□□□□□ -0.01
USP3-204ENST00000540797 LSM7Q9UK45 103 aaKnown RBP14.97□□□□□ -0.01
USP3-204ENST00000540797 MANSC4A6NHS7 340 aaPredicted RBP14.97□□□□□ -0.01
USP3-204ENST00000540797 DCDC2CA8MYV0 355 aa14.97□□□□□ -0.01
USP3-204ENST00000540797 ZFXP17010 805 aaPredicted RBP14.97□□□□□ -0.01
USP3-204ENST00000540797 HOXA10P31260 410 aaPredicted RBP14.97□□□□□ -0.01
USP3-204ENST00000540797 EXT2Q93063 718 aa14.97□□□□□ -0.01
USP3-204ENST00000540797 FHDC1Q9C0D6 1143 aaPredicted RBP14.97□□□□□ -0.01
USP3-204ENST00000540797 PLEKHA5Q9HAU0 1116 aa14.97□□□□□ -0.01
USP3-204ENST00000540797 NFU1Q9UMS0 254 aa14.97□□□□□ -0.01
USP3-204ENST00000540797 PCSK1P29120 753 aa14.96□□□□□ -0.01
USP3-204ENST00000540797 MRPS25P82663 173 aaKnown RBP14.96□□□□□ -0.01
USP3-204ENST00000540797 TMTC4Q5T4D3 741 aa14.96□□□□□ -0.01
USP3-204ENST00000540797 DPF2Q92785 391 aa14.96□□□□□ -0.01
USP3-204ENST00000540797 EPAS1Q99814 870 aa14.96□□□□□ -0.01
USP3-204ENST00000540797 SPATC1LQ9H0A9 340 aa14.96□□□□□ -0.01
USP3-204ENST00000540797 F5H423 210 aaPredicted RBP14.96□□□□□ -0.01
USP3-204ENST00000540797 SUN1O94901 812 aa14.96□□□□□ -0.01
USP3-204ENST00000540797 HLA-DRAP01903 254 aa14.96□□□□□ -0.01
USP3-204ENST00000540797 CASP2P42575 452 aa14.96□□□□□ -0.01
USP3-204ENST00000540797 HERVK_113P62684 666 aa14.96□□□□□ -0.01
USP3-204ENST00000540797 ROR1Q01973 937 aa14.96□□□□□ -0.01
USP3-204ENST00000540797 ZKSCAN8Q15776 578 aaPredicted RBP14.96□□□□□ -0.01
USP3-204ENST00000540797 PARD6BQ9BYG5 372 aa14.96□□□□□ -0.01
USP3-204ENST00000540797 KIAA1683Q9H0B3 1180 aa14.96□□□□□ -0.01
USP3-204ENST00000540797 C17orf75Q9HAS0 396 aa14.96□□□□□ -0.01
USP3-204ENST00000540797 KRT37O76014 449 aa14.96□□□□□ -0.01
USP3-204ENST00000540797 CLTAP09496 248 aa14.96□□□□□ -0.01
USP3-204ENST00000540797 SHMT1P34896 483 aa14.96□□□□□ -0.01
USP3-204ENST00000540797 SREBF1P36956 1147 aa14.96□□□□□ -0.01
USP3-204ENST00000540797 HSD17B4P51659 736 aa14.96□□□□□ -0.01
USP3-204ENST00000540797 MMTAG2Q9BU76 263 aaKnown RBP14.96□□□□□ -0.01
USP3-204ENST00000540797 TTC7AQ9ULT0 858 aaPredicted RBP14.96□□□□□ -0.01
USP3-204ENST00000540797 DFFAO00273 331 aa14.96□□□□□ -0.01
USP3-204ENST00000540797 SUPT20HL2P0C7V6 817 aa14.96□□□□□ -0.01
USP3-204ENST00000540797 ARP10275 920 aa14.96□□□□□ -0.01
USP3-204ENST00000540797 ZNF235Q14590 738 aa14.96□□□□□ -0.01
USP3-204ENST00000540797 SYT2Q8N9I0 419 aaPredicted RBP14.96□□□□□ -0.01
USP3-204ENST00000540797 PCSK9Q8NBP7 692 aaKnown RBP14.96□□□□□ -0.01
USP3-204ENST00000540797 MED15Q96RN5 788 aa14.96□□□□□ -0.01
USP3-204ENST00000540797 GOLGA8MH3BSY2 632 aa14.96□□□□□ -0.02
USP3-204ENST00000540797 NFIBO00712 420 aa14.96□□□□□ -0.02
USP3-204ENST00000540797 TXNDC9O14530 226 aa14.96□□□□□ -0.02
USP3-204ENST00000540797 EIF3BP55884 814 aaKnown RBP14.96□□□□□ -0.02
USP3-204ENST00000540797 SNX17Q15036 470 aa14.96□□□□□ -0.02
USP3-204ENST00000540797 TSNAXIP1Q2TAA8 658 aa14.96□□□□□ -0.02
USP3-204ENST00000540797 GLE1Q53GS7 698 aaKnown RBP14.96□□□□□ -0.02
USP3-204ENST00000540797 MOXD1Q6UVY6 613 aa14.96□□□□□ -0.02
USP3-204ENST00000540797 ZNF512Q96ME7 567 aaPredicted RBP14.96□□□□□ -0.02
USP3-204ENST00000540797 NT5C1AQ9BXI3 368 aa14.96□□□□□ -0.02
USP3-204ENST00000540797 EHD2Q9NZN4 543 aa14.96□□□□□ -0.02
USP3-204ENST00000540797 WDR35Q9P2L0 1181 aa14.96□□□□□ -0.02
USP3-204ENST00000540797 NEURL4Q96JN8 1562 aa14.95□□□□□ -0.02
USP3-204ENST00000540797 KIF20BQ96Q89 1820 aa14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms