RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 EPCAMP16422 314 aa11.73□□□□□ -0.53
CD44-227ENST00000528086 PDCP20941 246 aa11.73□□□□□ -0.53
CD44-227ENST00000528086 LONP1P36776 959 aaKnown RBP11.73□□□□□ -0.53
CD44-227ENST00000528086 NASPP49321 788 aaPredicted RBP11.73□□□□□ -0.53
CD44-227ENST00000528086 EFNA5P52803 228 aa11.73□□□□□ -0.53
CD44-227ENST00000528086 NCKAP1LP55160 1127 aa11.73□□□□□ -0.53
CD44-227ENST00000528086 KRT17Q04695 432 aa11.73□□□□□ -0.53
CD44-227ENST00000528086 SOX4Q06945 474 aaPredicted RBP11.73□□□□□ -0.53
CD44-227ENST00000528086 TCHHQ07283 1943 aa11.73□□□□□ -0.53
CD44-227ENST00000528086 SMC1AQ14683 1233 aaKnown RBP11.73□□□□□ -0.53
CD44-227ENST00000528086 SLC39A14Q15043 492 aa11.73□□□□□ -0.53
CD44-227ENST00000528086 XKR4Q5GH76 650 aa11.73□□□□□ -0.53
CD44-227ENST00000528086 ANKRD54Q6NXT1 300 aa11.73□□□□□ -0.53
CD44-227ENST00000528086 SLC39A4Q6P5W5 647 aa11.73□□□□□ -0.53
CD44-227ENST00000528086 PHLPP2Q6ZVD8 1323 aa11.73□□□□□ -0.53
CD44-227ENST00000528086 GJD3Q8N144 294 aa11.73□□□□□ -0.53
CD44-227ENST00000528086 C12orf76Q8N812 135 aaPredicted RBP11.73□□□□□ -0.53
CD44-227ENST00000528086 IFT74Q96LB3 600 aa11.73□□□□□ -0.53
CD44-227ENST00000528086 PPP1R10Q96QC0 940 aaKnown RBP11.73□□□□□ -0.53
CD44-227ENST00000528086 CDCA3Q99618 268 aaPredicted RBP11.73□□□□□ -0.53
CD44-227ENST00000528086 APOL5Q9BWW9 433 aa11.73□□□□□ -0.53
CD44-227ENST00000528086 UBN1Q9NPG3 1134 aa11.73□□□□□ -0.53
CD44-227ENST00000528086 KMT5AQ9NQR1 393 aa11.73□□□□□ -0.53
CD44-227ENST00000528086 CHST7Q9NS84 486 aa11.73□□□□□ -0.53
CD44-227ENST00000528086 PARP2Q9UGN5 583 aa11.73□□□□□ -0.53
CD44-227ENST00000528086 PUF60Q9UHX1 559 aaKnown RBP11.73□□□□□ -0.53
CD44-227ENST00000528086 FAN1Q9Y2M0 1017 aa11.73□□□□□ -0.53
CD44-227ENST00000528086 GDAQ9Y2T3 454 aa11.73□□□□□ -0.53
CD44-227ENST00000528086 SLC26A4O43511 780 aa11.72□□□□□ -0.53
CD44-227ENST00000528086 FAM189A1O60320 539 aa11.72□□□□□ -0.53
CD44-227ENST00000528086 BRD1O95696 1058 aa11.72□□□□□ -0.53
CD44-227ENST00000528086 BMP15O95972 392 aa11.72□□□□□ -0.53
CD44-227ENST00000528086 UBA7P41226 1012 aa11.72□□□□□ -0.53
CD44-227ENST00000528086 OR1G1P47890 313 aa11.72□□□□□ -0.53
CD44-227ENST00000528086 GRIK3Q13003 919 aa11.72□□□□□ -0.53
CD44-227ENST00000528086 DHX8Q14562 1220 aaKnown RBP11.72□□□□□ -0.53
CD44-227ENST00000528086 PUS10Q3MIT2 529 aaKnown RBP11.72□□□□□ -0.53
CD44-227ENST00000528086 SEZ6Q53EL9 994 aa11.72□□□□□ -0.53
CD44-227ENST00000528086 ZBTB41Q5SVQ8 909 aa11.72□□□□□ -0.53
CD44-227ENST00000528086 FOXD4L5Q5VV16 416 aaPredicted RBP11.72□□□□□ -0.53
CD44-227ENST00000528086 GPBP1Q86WP2 473 aa11.72□□□□□ -0.53
CD44-227ENST00000528086 ADHFE1Q8IWW8 467 aa11.72□□□□□ -0.53
CD44-227ENST00000528086 KCTD17Q8N5Z5 321 aa11.72□□□□□ -0.53
CD44-227ENST00000528086 LINC00301Q8NCQ3 95 aa11.72□□□□□ -0.53
CD44-227ENST00000528086 C3orf58Q8NDZ4 430 aa11.72□□□□□ -0.53
CD44-227ENST00000528086 FOXD4L4Q8WXT5 416 aaPredicted RBP11.72□□□□□ -0.53
CD44-227ENST00000528086 DNAJC19Q96DA6 116 aa11.72□□□□□ -0.53
CD44-227ENST00000528086 DRC1Q96MC2 740 aa11.72□□□□□ -0.53
CD44-227ENST00000528086 KLHL5Q96PQ7 755 aa11.72□□□□□ -0.53
CD44-227ENST00000528086 HERC2P3Q9BVR0 1158 aa11.72□□□□□ -0.53
CD44-227ENST00000528086 TRIM6Q9C030 488 aaPredicted RBP11.72□□□□□ -0.53
CD44-227ENST00000528086 NT5C3AQ9H0P0 336 aa11.72□□□□□ -0.53
CD44-227ENST00000528086 TFIP11Q9UBB9 837 aaKnown RBP11.72□□□□□ -0.53
CD44-227ENST00000528086 ZDHHC9Q9Y397 364 aa11.72□□□□□ -0.53
CD44-227ENST00000528086 DOCK8Q8NF50 2099 aa11.71□□□□□ -0.53
CD44-227ENST00000528086 NOTCH4Q99466 2003 aa11.71□□□□□ -0.53
CD44-227ENST00000528086 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP11.71□□□□□ -0.53
CD44-227ENST00000528086 CASTOR2A6NHX0 329 aa11.71□□□□□ -0.53
CD44-227ENST00000528086 MYMKA6NI61 221 aa11.71□□□□□ -0.53
CD44-227ENST00000528086 LOC730098B7Z3J9 87 aa11.71□□□□□ -0.53
CD44-227ENST00000528086 KIF4AO95239 1232 aa11.71□□□□□ -0.53
CD44-227ENST00000528086 SOD2P04179 222 aa11.71□□□□□ -0.53
CD44-227ENST00000528086 WEE2P0C1S8 567 aa11.71□□□□□ -0.53
CD44-227ENST00000528086 DDIT3P35638 169 aa11.71□□□□□ -0.53
CD44-227ENST00000528086 GRM5P41594 1212 aa11.71□□□□□ -0.53
CD44-227ENST00000528086 NCBP1Q09161 790 aaKnown RBP11.71□□□□□ -0.53
CD44-227ENST00000528086 DMP1Q13316 513 aaPredicted RBP11.71□□□□□ -0.53
CD44-227ENST00000528086 GLRA4Q5JXX5 417 aa11.71□□□□□ -0.53
CD44-227ENST00000528086 AXDND1Q5T1B0 1012 aaPredicted RBP11.71□□□□□ -0.53
CD44-227ENST00000528086 ZBTB33Q86T24 672 aa11.71□□□□□ -0.53
CD44-227ENST00000528086 RPS6KC1Q96S38 1066 aa11.71□□□□□ -0.53
CD44-227ENST00000528086 TIPINQ9BVW5 301 aa11.71□□□□□ -0.53
CD44-227ENST00000528086 STRA6Q9BX79 667 aa11.71□□□□□ -0.53
CD44-227ENST00000528086 FGFBP2Q9BYJ0 223 aa11.71□□□□□ -0.53
CD44-227ENST00000528086 C17orf75Q9HAS0 396 aa11.71□□□□□ -0.53
CD44-227ENST00000528086 GOLGA2P5Q9HBQ8 144 aa11.71□□□□□ -0.53
CD44-227ENST00000528086 RXFP1Q9HBX9 757 aa11.71□□□□□ -0.53
CD44-227ENST00000528086 SMIM28A0A1B0GU29 152 aa11.7□□□□□ -0.54
CD44-227ENST00000528086 TISP43B9A030 160 aa11.7□□□□□ -0.54
CD44-227ENST00000528086 PI4K2BG5E9Z4 385 aa11.7□□□□□ -0.54
CD44-227ENST00000528086 TEX28O15482 410 aa11.7□□□□□ -0.54
CD44-227ENST00000528086 ADAM12O43184 909 aa11.7□□□□□ -0.54
CD44-227ENST00000528086 NMT1P30419 496 aaKnown RBP11.7□□□□□ -0.54
CD44-227ENST00000528086 CLCN4P51793 760 aa11.7□□□□□ -0.54
CD44-227ENST00000528086 OSTNP61366 133 aa11.7□□□□□ -0.54
CD44-227ENST00000528086 DSG1Q02413 1049 aa11.7□□□□□ -0.54
CD44-227ENST00000528086 TUSC3Q13454 348 aa11.7□□□□□ -0.54
CD44-227ENST00000528086 CBX2Q14781 532 aaPredicted RBP11.7□□□□□ -0.54
CD44-227ENST00000528086 SLC10A6Q3KNW5 377 aa11.7□□□□□ -0.54
CD44-227ENST00000528086 DCAF4L1Q3SXM0 396 aa11.7□□□□□ -0.54
CD44-227ENST00000528086 RTP2Q5QGT7 225 aa11.7□□□□□ -0.54
CD44-227ENST00000528086 FUT10Q6P4F1 479 aa11.7□□□□□ -0.54
CD44-227ENST00000528086 RSPO2Q6UXX9 243 aaPredicted RBP11.7□□□□□ -0.54
CD44-227ENST00000528086 HAUS6Q7Z4H7 955 aa11.7□□□□□ -0.54
CD44-227ENST00000528086 SPRYD3Q8NCJ5 442 aa11.7□□□□□ -0.54
CD44-227ENST00000528086 HASPINQ8TF76 798 aa11.7□□□□□ -0.54
CD44-227ENST00000528086 LARP4BQ92615 738 aaKnown RBP11.7□□□□□ -0.54
CD44-227ENST00000528086 PPP2R3CQ969Q6 453 aa11.7□□□□□ -0.54
CD44-227ENST00000528086 SNX27Q96L92 541 aa11.7□□□□□ -0.54
CD44-227ENST00000528086 FAM193BQ96PV7 902 aaPredicted RBP11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms