RNA–Protein interactions for RNA: ENST00000511439.5

TOPBP1-208, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 5

Gene TOPBP1, Length 1,142 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-208ENST00000511439 ATL2Q8NHH9 583 aa4.84□□□□□ -1.63
TOPBP1-208ENST00000511439 WDR48Q8TAF3 677 aa4.84□□□□□ -1.63
TOPBP1-208ENST00000511439 WDR66Q8TBY9 1149 aa4.84□□□□□ -1.63
TOPBP1-208ENST00000511439 FOXRED1Q96CU9 486 aaPredicted RBP4.84□□□□□ -1.63
TOPBP1-208ENST00000511439 ZDHHC5Q9C0B5 715 aa4.84□□□□□ -1.63
TOPBP1-208ENST00000511439 ZMAT4Q9H898 229 aa4.84□□□□□ -1.63
TOPBP1-208ENST00000511439 INCENPQ9NQS7 918 aa4.84□□□□□ -1.63
TOPBP1-208ENST00000511439 TOMM22Q9NS69 142 aa4.84□□□□□ -1.63
TOPBP1-208ENST00000511439 GALNT8Q9NY28 637 aa4.84□□□□□ -1.63
TOPBP1-208ENST00000511439 MCM8Q9UJA3 840 aa4.84□□□□□ -1.63
TOPBP1-208ENST00000511439 APOBEC2Q9Y235 224 aaKnown RBP4.84□□□□□ -1.63
TOPBP1-208ENST00000511439 NOP58Q9Y2X3 529 aaKnown RBP4.84□□□□□ -1.63
TOPBP1-208ENST00000511439 NR2E1Q9Y466 385 aa4.84□□□□□ -1.63
TOPBP1-208ENST00000511439 CRYBG1Q9Y4K1 1723 aa4.83□□□□□ -1.64
TOPBP1-208ENST00000511439 TRPM1Q7Z4N2 1603 aa4.83□□□□□ -1.64
TOPBP1-208ENST00000511439 ANKRD30BQ9BXX2 1392 aa4.83□□□□□ -1.64
TOPBP1-208ENST00000511439 OVOL3O00110 214 aa4.83□□□□□ -1.64
TOPBP1-208ENST00000511439 ARHGAP6O43182 974 aa4.83□□□□□ -1.64
TOPBP1-208ENST00000511439 HMGCRP04035 888 aa4.83□□□□□ -1.64
TOPBP1-208ENST00000511439 VEGFAP15692 232 aaPredicted RBP4.83□□□□□ -1.64
TOPBP1-208ENST00000511439 CDK11BP21127 795 aaKnown RBP4.83□□□□□ -1.64
TOPBP1-208ENST00000511439 MC4RP32245 332 aa4.83□□□□□ -1.64
TOPBP1-208ENST00000511439 RRADP55042 308 aa4.83□□□□□ -1.64
TOPBP1-208ENST00000511439 TERF2Q15554 542 aa4.83□□□□□ -1.64
TOPBP1-208ENST00000511439 RNF151Q2KHN1 245 aa4.83□□□□□ -1.64
TOPBP1-208ENST00000511439 USP39Q53GS9 565 aaKnown RBP4.83□□□□□ -1.64
TOPBP1-208ENST00000511439 RNF219Q5W0B1 726 aaPredicted RBP4.83□□□□□ -1.64
TOPBP1-208ENST00000511439 NME9Q86XW9 330 aa4.83□□□□□ -1.64
TOPBP1-208ENST00000511439 ZZZ3Q8IYH5 903 aa4.83□□□□□ -1.64
TOPBP1-208ENST00000511439 HIPK4Q8NE63 616 aa4.83□□□□□ -1.64
TOPBP1-208ENST00000511439 ZNF503Q96F45 646 aa4.83□□□□□ -1.64
TOPBP1-208ENST00000511439 AMNQ9BXJ7 453 aa4.83□□□□□ -1.64
TOPBP1-208ENST00000511439 CSRNP2Q9H175 543 aa4.83□□□□□ -1.64
TOPBP1-208ENST00000511439 UCKL1Q9NWZ5 548 aa4.83□□□□□ -1.64
TOPBP1-208ENST00000511439 PUF60Q9UHX1 559 aaKnown RBP4.83□□□□□ -1.64
TOPBP1-208ENST00000511439 PTPN22Q9Y2R2 807 aa4.83□□□□□ -1.64
TOPBP1-208ENST00000511439 AKAP12Q02952 1782 aa4.83□□□□□ -1.64
TOPBP1-208ENST00000511439 PIK3C2AO00443 1686 aa4.83□□□□□ -1.64
TOPBP1-208ENST00000511439 NHSQ6T4R5 1651 aa4.83□□□□□ -1.64
TOPBP1-208ENST00000511439 ALS2Q96Q42 1657 aa4.83□□□□□ -1.64
TOPBP1-208ENST00000511439 VIRMAQ69YN4 1812 aaKnown RBP4.82□□□□□ -1.64
TOPBP1-208ENST00000511439 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP4.82□□□□□ -1.64
TOPBP1-208ENST00000511439 PRAMEF22A3QJZ6 481 aa4.82□□□□□ -1.64
TOPBP1-208ENST00000511439 NPIPB8E9PQR5 432 aa4.82□□□□□ -1.64
TOPBP1-208ENST00000511439 ULK1O75385 1050 aa4.82□□□□□ -1.64
TOPBP1-208ENST00000511439 ACO1P21399 889 aaKnown RBP4.82□□□□□ -1.64
TOPBP1-208ENST00000511439 CD40P25942 277 aa4.82□□□□□ -1.64
TOPBP1-208ENST00000511439 MCM7P33993 719 aa4.82□□□□□ -1.64
TOPBP1-208ENST00000511439 CDKN1CP49918 316 aaPredicted RBP4.82□□□□□ -1.64
TOPBP1-208ENST00000511439 PTH1RQ03431 593 aa4.82□□□□□ -1.64
TOPBP1-208ENST00000511439 KLF10Q13118 480 aa4.82□□□□□ -1.64
TOPBP1-208ENST00000511439 FHL2Q14192 279 aa4.82□□□□□ -1.64
TOPBP1-208ENST00000511439 EIF4HQ15056 248 aaKnown RBP4.82□□□□□ -1.64
TOPBP1-208ENST00000511439 STILQ15468 1287 aa4.82□□□□□ -1.64
TOPBP1-208ENST00000511439 BROXQ5VW32 411 aa4.82□□□□□ -1.64
TOPBP1-208ENST00000511439 ZNF610Q8N9Z0 462 aa4.82□□□□□ -1.64
TOPBP1-208ENST00000511439 PRPF38AQ8NAV1 312 aaKnown RBP4.82□□□□□ -1.64
TOPBP1-208ENST00000511439 SLC5A5Q92911 643 aa4.82□□□□□ -1.64
TOPBP1-208ENST00000511439 BTBD2Q9BX70 525 aa4.82□□□□□ -1.64
TOPBP1-208ENST00000511439 C12orf65Q9H3J6 166 aaKnown RBP4.82□□□□□ -1.64
TOPBP1-208ENST00000511439 AURKAIP1Q9NWT8 199 aaPredicted RBP4.82□□□□□ -1.64
TOPBP1-208ENST00000511439 CLTCL1P53675 1640 aa4.82□□□□□ -1.64
TOPBP1-208ENST00000511439 MEGF6O75095 1541 aa4.82□□□□□ -1.64
TOPBP1-208ENST00000511439 CRB1P82279 1406 aa4.81□□□□□ -1.64
TOPBP1-208ENST00000511439 TRPM3Q9HCF6 1732 aaPredicted RBP4.81□□□□□ -1.64
TOPBP1-208ENST00000511439 WDR33Q9C0J8 1336 aaKnown RBP4.81□□□□□ -1.64
TOPBP1-208ENST00000511439 hCG_2014768A0A024R1R8 64 aa4.81□□□□□ -1.64
TOPBP1-208ENST00000511439 UBA6A0AVT1 1052 aaPredicted RBP4.81□□□□□ -1.64
TOPBP1-208ENST00000511439 ZNF202O95125 648 aa4.81□□□□□ -1.64
TOPBP1-208ENST00000511439 PRLP01236 227 aa4.81□□□□□ -1.64
TOPBP1-208ENST00000511439 LSP1P33241 339 aa4.81□□□□□ -1.64
TOPBP1-208ENST00000511439 MEOX1P50221 254 aa4.81□□□□□ -1.64
TOPBP1-208ENST00000511439 SESN3P58005 492 aa4.81□□□□□ -1.64
TOPBP1-208ENST00000511439 IGBP1P78318 339 aa4.81□□□□□ -1.64
TOPBP1-208ENST00000511439 IL13RA1P78552 427 aa4.81□□□□□ -1.64
TOPBP1-208ENST00000511439 TMPRSS15P98073 1019 aa4.81□□□□□ -1.64
TOPBP1-208ENST00000511439 ALDH6A1Q02252 535 aaKnown RBP4.81□□□□□ -1.64
TOPBP1-208ENST00000511439 ADCY1Q08828 1119 aa4.81□□□□□ -1.64
TOPBP1-208ENST00000511439 CRB2Q5IJ48 1285 aa4.81□□□□□ -1.64
TOPBP1-208ENST00000511439 MAMDC4Q6UXC1 1216 aa4.81□□□□□ -1.64
TOPBP1-208ENST00000511439 USP30Q70CQ3 517 aa4.81□□□□□ -1.64
TOPBP1-208ENST00000511439 SPATS2Q86XZ4 545 aaKnown RBP4.81□□□□□ -1.64
TOPBP1-208ENST00000511439 RPUSD2Q8IZ73 545 aaKnown RBP4.81□□□□□ -1.64
TOPBP1-208ENST00000511439 AMER2Q8N7J2 671 aa4.81□□□□□ -1.64
TOPBP1-208ENST00000511439 CLRN3Q8NCR9 226 aa4.81□□□□□ -1.64
TOPBP1-208ENST00000511439 RTF1Q92541 710 aaKnown RBP4.81□□□□□ -1.64
TOPBP1-208ENST00000511439 ERCC4Q92889 916 aaPredicted RBP4.81□□□□□ -1.64
TOPBP1-208ENST00000511439 E2F7Q96AV8 911 aa4.81□□□□□ -1.64
TOPBP1-208ENST00000511439 ZNF496Q96IT1 587 aaPredicted RBP4.81□□□□□ -1.64
TOPBP1-208ENST00000511439 PUS7Q96PZ0 661 aaKnown RBP4.81□□□□□ -1.64
TOPBP1-208ENST00000511439 OR14A2Q96R54 314 aa4.81□□□□□ -1.64
TOPBP1-208ENST00000511439 FOXB1Q99853 325 aa4.81□□□□□ -1.64
TOPBP1-208ENST00000511439 DPYSL5Q9BPU6 564 aa4.81□□□□□ -1.64
TOPBP1-208ENST00000511439 NELFAQ9H3P2 528 aa4.81□□□□□ -1.64
TOPBP1-208ENST00000511439 RRP7BPQ9NSQ0 103 aa4.81□□□□□ -1.64
TOPBP1-208ENST00000511439 USP36Q9P275 1121 aaKnown RBP4.81□□□□□ -1.64
TOPBP1-208ENST00000511439 TUBGCP6Q96RT7 1819 aa4.81□□□□□ -1.64
TOPBP1-208ENST00000511439 SPATA31E1Q6ZUB1 1445 aa4.8□□□□□ -1.64
TOPBP1-208ENST00000511439 GPRASP1Q5JY77 1395 aa4.8□□□□□ -1.64
TOPBP1-208ENST00000511439 ECE1P42892 770 aa4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms