RNA–Protein interactions for RNA: ENST00000509388.5

RNF4-213, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-213ENST00000509388 FAM213AQ9BRX8 229 aa16.17■□□□□ 0.18
RNF4-213ENST00000509388 RNF39Q9H2S5 420 aa16.17■□□□□ 0.18
RNF4-213ENST00000509388 RPF1Q9H9Y2 349 aaKnown RBP16.17■□□□□ 0.18
RNF4-213ENST00000509388 FRMD4BQ9Y2L6 1034 aa16.17■□□□□ 0.18
RNF4-213ENST00000509388 GIT1Q9Y2X7 761 aa16.17■□□□□ 0.18
RNF4-213ENST00000509388 SIP14410 1827 aa16.17■□□□□ 0.18
RNF4-213ENST00000509388 GOLGA8IPA6NC78 632 aa16.16■□□□□ 0.18
RNF4-213ENST00000509388 GOLGA8JA6NMD2 632 aa16.16■□□□□ 0.18
RNF4-213ENST00000509388 CETN3O15182 167 aa16.16■□□□□ 0.18
RNF4-213ENST00000509388 EXTL3O43909 919 aa16.16■□□□□ 0.18
RNF4-213ENST00000509388 FGFR1P11362 822 aa16.16■□□□□ 0.18
RNF4-213ENST00000509388 NR2F2P24468 414 aa16.16■□□□□ 0.18
RNF4-213ENST00000509388 STX17P56962 302 aa16.16■□□□□ 0.18
RNF4-213ENST00000509388 TPD52L1Q16890 204 aaPredicted RBP16.16■□□□□ 0.18
RNF4-213ENST00000509388 EDRF1Q3B7T1 1238 aa16.16■□□□□ 0.18
RNF4-213ENST00000509388 ZSCAN23Q3MJ62 389 aa16.16■□□□□ 0.18
RNF4-213ENST00000509388 CT47A1Q5JQC4 288 aaPredicted RBP16.16■□□□□ 0.18
RNF4-213ENST00000509388 PRPF38BQ5VTL8 546 aaKnown RBP16.16■□□□□ 0.18
RNF4-213ENST00000509388 CEP135Q66GS9 1140 aa16.16■□□□□ 0.18
RNF4-213ENST00000509388 ANKRD40Q6AI12 368 aa16.16■□□□□ 0.18
RNF4-213ENST00000509388 TMCO2Q7Z6W1 182 aaPredicted RBP16.16■□□□□ 0.18
RNF4-213ENST00000509388 RDH13Q8NBN7 331 aa16.16■□□□□ 0.18
RNF4-213ENST00000509388 URGCPQ8TCY9 931 aa16.16■□□□□ 0.18
RNF4-213ENST00000509388 FAM212AQ96EL1 285 aa16.16■□□□□ 0.18
RNF4-213ENST00000509388 RPS6KC1Q96S38 1066 aa16.16■□□□□ 0.18
RNF4-213ENST00000509388 HAPLN2Q9GZV7 340 aa16.16■□□□□ 0.18
RNF4-213ENST00000509388 NAT10Q9H0A0 1025 aaKnown RBP16.16■□□□□ 0.18
RNF4-213ENST00000509388 GZF1Q9H116 711 aaPredicted RBP16.16■□□□□ 0.18
RNF4-213ENST00000509388 KLK14Q9P0G3 267 aa16.16■□□□□ 0.18
RNF4-213ENST00000509388 RWDD2AQ9UIY3 292 aa16.16■□□□□ 0.18
RNF4-213ENST00000509388 INPP5FQ9Y2H2 1132 aa16.16■□□□□ 0.18
RNF4-213ENST00000509388 HSFX4A0A1B0GTS1 333 aaPredicted RBP16.15■□□□□ 0.18
RNF4-213ENST00000509388 HSFX3A0A1B0GWH4 333 aaPredicted RBP16.15■□□□□ 0.18
RNF4-213ENST00000509388 ZNF233A6NK53 670 aa16.15■□□□□ 0.18
RNF4-213ENST00000509388 TBKBP1A7MCY6 615 aa16.15■□□□□ 0.18
RNF4-213ENST00000509388 TLL1O43897 1013 aa16.15■□□□□ 0.18
RNF4-213ENST00000509388 RECQL4O94761 1208 aa16.15■□□□□ 0.18
RNF4-213ENST00000509388 GJB5O95377 273 aa16.15■□□□□ 0.18
RNF4-213ENST00000509388 FGFR1OPO95684 399 aaKnown RBP16.15■□□□□ 0.18
RNF4-213ENST00000509388 ATF7P17544 494 aaPredicted RBP16.15■□□□□ 0.18
RNF4-213ENST00000509388 ERCC5P28715 1186 aaPredicted RBP16.15■□□□□ 0.18
RNF4-213ENST00000509388 FKBP3Q00688 224 aaKnown RBP16.15■□□□□ 0.18
RNF4-213ENST00000509388 AGMOQ6ZNB7 445 aa16.15■□□□□ 0.18
RNF4-213ENST00000509388 SLC9A9Q8IVB4 645 aa16.15■□□□□ 0.18
RNF4-213ENST00000509388 HELQQ8TDG4 1101 aa16.15■□□□□ 0.18
RNF4-213ENST00000509388 RSPH1Q8WYR4 309 aa16.15■□□□□ 0.18
RNF4-213ENST00000509388 GAD1Q99259 594 aa16.15■□□□□ 0.18
RNF4-213ENST00000509388 TMEM117Q9H0C3 514 aa16.15■□□□□ 0.18
RNF4-213ENST00000509388 KANSL3Q9P2N6 904 aa16.15■□□□□ 0.18
RNF4-213ENST00000509388 CPSF3Q9UKF6 684 aaKnown RBP16.15■□□□□ 0.18
RNF4-213ENST00000509388 INSL6Q9Y581 213 aa16.15■□□□□ 0.18
RNF4-213ENST00000509388 TRIM49BA6NDI0 452 aa16.14■□□□□ 0.17
RNF4-213ENST00000509388 MEIS3P2A8K0S8 358 aa16.14■□□□□ 0.17
RNF4-213ENST00000509388 OFD1O75665 1012 aa16.14■□□□□ 0.17
RNF4-213ENST00000509388 DGKIO75912 1065 aa16.14■□□□□ 0.17
RNF4-213ENST00000509388 MLH1P40692 756 aa16.14■□□□□ 0.17
RNF4-213ENST00000509388 TNFSF9P41273 254 aa16.14■□□□□ 0.17
RNF4-213ENST00000509388 POU5F1Q01860 360 aaKnown RBP16.14■□□□□ 0.17
RNF4-213ENST00000509388 PPP2R3AQ06190 1150 aa16.14■□□□□ 0.17
RNF4-213ENST00000509388 BTG3Q14201 252 aaPredicted RBP16.14■□□□□ 0.17
RNF4-213ENST00000509388 NFIL3Q16649 462 aa16.14■□□□□ 0.17
RNF4-213ENST00000509388 ZBTB41Q5SVQ8 909 aa16.14■□□□□ 0.17
RNF4-213ENST00000509388 CD302Q8IX05 232 aa16.14■□□□□ 0.17
RNF4-213ENST00000509388 TET1Q8NFU7 2136 aa16.14■□□□□ 0.17
RNF4-213ENST00000509388 FAM193BQ96PV7 902 aaPredicted RBP16.14■□□□□ 0.17
RNF4-213ENST00000509388 RAD9AQ99638 391 aa16.14■□□□□ 0.17
RNF4-213ENST00000509388 MRPL9Q9BYD2 267 aaKnown RBP16.14■□□□□ 0.17
RNF4-213ENST00000509388 PLEKHA5Q9HAU0 1116 aa16.14■□□□□ 0.17
RNF4-213ENST00000509388 RBAKQ9NYW8 714 aaPredicted RBP16.14■□□□□ 0.17
RNF4-213ENST00000509388 ARL5CA6NH57 179 aa16.13■□□□□ 0.17
RNF4-213ENST00000509388 CXCL8P10145 99 aa16.13■□□□□ 0.17
RNF4-213ENST00000509388 PMS1P54277 932 aaKnown RBP16.13■□□□□ 0.17
RNF4-213ENST00000509388 RNASELQ05823 741 aaKnown RBP16.13■□□□□ 0.17
RNF4-213ENST00000509388 SURF1Q15526 300 aa16.13■□□□□ 0.17
RNF4-213ENST00000509388 SNRNP35Q16560 246 aaKnown RBP16.13■□□□□ 0.17
RNF4-213ENST00000509388 PAN2Q504Q3 1202 aaKnown RBP16.13■□□□□ 0.17
RNF4-213ENST00000509388 ZCWPW2Q504Y3 356 aa16.13■□□□□ 0.17
RNF4-213ENST00000509388 NOMO2Q5JPE7 1267 aa16.13■□□□□ 0.17
RNF4-213ENST00000509388 FOXR2Q6PJQ5 311 aa16.13■□□□□ 0.17
RNF4-213ENST00000509388 USP37Q86T82 979 aa16.13■□□□□ 0.17
RNF4-213ENST00000509388 CBWD2Q8IUF1 395 aa16.13■□□□□ 0.17
RNF4-213ENST00000509388 TMEM192Q8IY95 271 aa16.13■□□□□ 0.17
RNF4-213ENST00000509388 CRIPAKQ8N1N5 446 aa16.13■□□□□ 0.17
RNF4-213ENST00000509388 CSGALNACT2Q8N6G5 542 aa16.13■□□□□ 0.17
RNF4-213ENST00000509388 TMEM174Q8WUU8 243 aa16.13■□□□□ 0.17
RNF4-213ENST00000509388 DNAJC25Q9H1X3 360 aa16.13■□□□□ 0.17
RNF4-213ENST00000509388 DMAC2Q9NW81 257 aa16.13■□□□□ 0.17
RNF4-213ENST00000509388 A0A1W2PPC1 479 aa16.12■□□□□ 0.17
RNF4-213ENST00000509388 FAM189A1O60320 539 aa16.12■□□□□ 0.17
RNF4-213ENST00000509388 IL18RAPO95256 599 aa16.12■□□□□ 0.17
RNF4-213ENST00000509388 POMCP01189 267 aa16.12■□□□□ 0.17
RNF4-213ENST00000509388 EPB41P11171 864 aaKnown RBP16.12■□□□□ 0.17
RNF4-213ENST00000509388 KRT13P13646 458 aa16.12■□□□□ 0.17
RNF4-213ENST00000509388 PSMC2P35998 433 aaKnown RBP16.12■□□□□ 0.17
RNF4-213ENST00000509388 GATMP50440 423 aa16.12■□□□□ 0.17
RNF4-213ENST00000509388 ENOX2Q16206 610 aaKnown RBP16.12■□□□□ 0.17
RNF4-213ENST00000509388 SLC10A6Q3KNW5 377 aa16.12■□□□□ 0.17
RNF4-213ENST00000509388 ANO6Q4KMQ2 910 aa16.12■□□□□ 0.17
RNF4-213ENST00000509388 CLLU1OSQ5K130 101 aa16.12■□□□□ 0.17
RNF4-213ENST00000509388 SPOUT1Q5T280 376 aaKnown RBP16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms