RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 SEC14L1Q92503 715 aa12.89□□□□□ -0.35
NUP54-202ENST00000502850 ZKSCAN4Q969J2 545 aaPredicted RBP12.89□□□□□ -0.35
NUP54-202ENST00000502850 ARHGEF26Q96DR7 871 aa12.89□□□□□ -0.35
NUP54-202ENST00000502850 ZIM3Q96PE6 472 aa12.89□□□□□ -0.35
NUP54-202ENST00000502850 POLR3FQ9H1D9 316 aaPredicted RBP12.89□□□□□ -0.35
NUP54-202ENST00000502850 GOLPH3Q9H4A6 298 aa12.89□□□□□ -0.35
NUP54-202ENST00000502850 A1CFQ9NQ94 594 aaKnown RBP12.89□□□□□ -0.35
NUP54-202ENST00000502850 PDLIM7Q9NR12 457 aa12.89□□□□□ -0.35
NUP54-202ENST00000502850 C1orf112Q9NSG2 853 aa12.89□□□□□ -0.35
NUP54-202ENST00000502850 GTF3C4Q9UKN8 822 aa12.89□□□□□ -0.35
NUP54-202ENST00000502850 SCAF8Q9UPN6 1271 aaKnown RBP12.89□□□□□ -0.35
NUP54-202ENST00000502850 DOCK5Q9H7D0 1870 aa12.89□□□□□ -0.35
NUP54-202ENST00000502850 TMEM150BA6NC51 233 aa12.88□□□□□ -0.35
NUP54-202ENST00000502850 GOLGA8IPA6NC78 632 aa12.88□□□□□ -0.35
NUP54-202ENST00000502850 GOLGA8JA6NMD2 632 aa12.88□□□□□ -0.35
NUP54-202ENST00000502850 HMGB1P1B2RPK0 211 aaPredicted RBP12.88□□□□□ -0.35
NUP54-202ENST00000502850 ANKRD63C9JTQ0 380 aa12.88□□□□□ -0.35
NUP54-202ENST00000502850 ZNF862O60290 1169 aa12.88□□□□□ -0.35
NUP54-202ENST00000502850 STBD1O95210 358 aa12.88□□□□□ -0.35
NUP54-202ENST00000502850 LDHAP00338 332 aaKnown RBP12.88□□□□□ -0.35
NUP54-202ENST00000502850 RFC5P40937 340 aa12.88□□□□□ -0.35
NUP54-202ENST00000502850 LIG4P49917 911 aa12.88□□□□□ -0.35
NUP54-202ENST00000502850 POLGP54098 1239 aaPredicted RBP12.88□□□□□ -0.35
NUP54-202ENST00000502850 HNRNPH2P55795 449 aaKnown RBP12.88□□□□□ -0.35
NUP54-202ENST00000502850 ERVK-9P63128 1117 aa12.88□□□□□ -0.35
NUP54-202ENST00000502850 MRPS25P82663 173 aaKnown RBP12.88□□□□□ -0.35
NUP54-202ENST00000502850 IQCKQ8N0W5 287 aa12.88□□□□□ -0.35
NUP54-202ENST00000502850 CCDC127Q96BQ5 260 aa12.88□□□□□ -0.35
NUP54-202ENST00000502850 SAAL1Q96ER3 474 aa12.88□□□□□ -0.35
NUP54-202ENST00000502850 WNK4Q96J92 1243 aa12.88□□□□□ -0.35
NUP54-202ENST00000502850 MPHOSPH6Q99547 160 aaKnown RBP12.88□□□□□ -0.35
NUP54-202ENST00000502850 ZSWIM1Q9BR11 485 aa12.88□□□□□ -0.35
NUP54-202ENST00000502850 AP1M1Q9BXS5 423 aa12.88□□□□□ -0.35
NUP54-202ENST00000502850 DDX47Q9H0S4 455 aaKnown RBP12.88□□□□□ -0.35
NUP54-202ENST00000502850 ESYT3A0FGR9 886 aa12.88□□□□□ -0.35
NUP54-202ENST00000502850 SPDYE16A6NNV3 312 aaPredicted RBP12.88□□□□□ -0.35
NUP54-202ENST00000502850 PIGRP01833 764 aa12.88□□□□□ -0.35
NUP54-202ENST00000502850 OATP04181 439 aa12.88□□□□□ -0.35
NUP54-202ENST00000502850 CYP1A2P05177 515 aa12.88□□□□□ -0.35
NUP54-202ENST00000502850 MYBL1P10243 752 aa12.88□□□□□ -0.35
NUP54-202ENST00000502850 CYP11B1P15538 503 aa12.88□□□□□ -0.35
NUP54-202ENST00000502850 CHRNA3P32297 505 aa12.88□□□□□ -0.35
NUP54-202ENST00000502850 NAMPTP43490 491 aa12.88□□□□□ -0.35
NUP54-202ENST00000502850 SKOR1P84550 965 aa12.88□□□□□ -0.35
NUP54-202ENST00000502850 EMC2Q15006 297 aa12.88□□□□□ -0.35
NUP54-202ENST00000502850 PSMD6Q15008 389 aa12.88□□□□□ -0.35
NUP54-202ENST00000502850 WDR44Q5JSH3 913 aa12.88□□□□□ -0.35
NUP54-202ENST00000502850 NOP9Q86U38 636 aaKnown RBP12.88□□□□□ -0.35
NUP54-202ENST00000502850 CCDC60Q8IWA6 550 aaPredicted RBP12.88□□□□□ -0.35
NUP54-202ENST00000502850 ARFGAP2Q8N6H7 521 aa12.88□□□□□ -0.35
NUP54-202ENST00000502850 HELQQ8TDG4 1101 aa12.88□□□□□ -0.35
NUP54-202ENST00000502850 RIN2Q8WYP3 895 aaPredicted RBP12.88□□□□□ -0.35
NUP54-202ENST00000502850 BSNDQ8WZ55 320 aa12.88□□□□□ -0.35
NUP54-202ENST00000502850 KREMEN1Q96MU8 473 aa12.88□□□□□ -0.35
NUP54-202ENST00000502850 SH2D3AQ9BRG2 576 aa12.88□□□□□ -0.35
NUP54-202ENST00000502850 FAM129AQ9BZQ8 928 aa12.88□□□□□ -0.35
NUP54-202ENST00000502850 ZNF302Q9NR11 478 aa12.88□□□□□ -0.35
NUP54-202ENST00000502850 TAS2R14Q9NYV8 317 aa12.88□□□□□ -0.35
NUP54-202ENST00000502850 PARP2Q9UGN5 583 aa12.88□□□□□ -0.35
NUP54-202ENST00000502850 MTUS1Q9ULD2 1270 aa12.88□□□□□ -0.35
NUP54-202ENST00000502850 AFG3L2Q9Y4W6 797 aa12.88□□□□□ -0.35
NUP54-202ENST00000502850 ALG6Q9Y672 507 aa12.88□□□□□ -0.35
NUP54-202ENST00000502850 PTPRFP10586 1907 aa12.87□□□□□ -0.35
NUP54-202ENST00000502850 ZSCAN5CA6NGD5 496 aaPredicted RBP12.87□□□□□ -0.35
NUP54-202ENST00000502850 RGS20O76081 388 aa12.87□□□□□ -0.35
NUP54-202ENST00000502850 ATG7O95352 703 aa12.87□□□□□ -0.35
NUP54-202ENST00000502850 SGPL1O95470 568 aa12.87□□□□□ -0.35
NUP54-202ENST00000502850 CTNNA2P26232 953 aa12.87□□□□□ -0.35
NUP54-202ENST00000502850 GUCY2FP51841 1108 aa12.87□□□□□ -0.35
NUP54-202ENST00000502850 CLDN10P78369 228 aa12.87□□□□□ -0.35
NUP54-202ENST00000502850 DR1Q01658 176 aa12.87□□□□□ -0.35
NUP54-202ENST00000502850 PRPF4BQ13523 1007 aaKnown RBP12.87□□□□□ -0.35
NUP54-202ENST00000502850 RUFY4Q6ZNE9 571 aa12.87□□□□□ -0.35
NUP54-202ENST00000502850 DNAAF5Q86Y56 855 aa12.87□□□□□ -0.35
NUP54-202ENST00000502850 EXOC8Q8IYI6 725 aa12.87□□□□□ -0.35
NUP54-202ENST00000502850 ZNF564Q8TBZ8 553 aaPredicted RBP12.87□□□□□ -0.35
NUP54-202ENST00000502850 SLC7A3Q8WY07 619 aa12.87□□□□□ -0.35
NUP54-202ENST00000502850 FNBP1Q96RU3 617 aa12.87□□□□□ -0.35
NUP54-202ENST00000502850 KIFC3Q9BVG8 833 aa12.87□□□□□ -0.35
NUP54-202ENST00000502850 CAPS2Q9BXY5 557 aa12.87□□□□□ -0.35
NUP54-202ENST00000502850 XPNPEP1Q9NQW7 623 aa12.87□□□□□ -0.35
NUP54-202ENST00000502850 GGA3Q9NZ52 723 aa12.87□□□□□ -0.35
NUP54-202ENST00000502850 COG5Q9UP83 839 aa12.87□□□□□ -0.35
NUP54-202ENST00000502850 MAFBQ9Y5Q3 323 aaPredicted RBP12.87□□□□□ -0.35
NUP54-202ENST00000502850 STYXL1Q9Y6J8 313 aa12.87□□□□□ -0.35
NUP54-202ENST00000502850 PAPPA2Q9BXP8 1791 aa12.86□□□□□ -0.35
NUP54-202ENST00000502850 CYP26A1O43174 497 aa12.86□□□□□ -0.35
NUP54-202ENST00000502850 PHF2O75151 1096 aa12.86□□□□□ -0.35
NUP54-202ENST00000502850 PPFIA4O75335 1185 aa12.86□□□□□ -0.35
NUP54-202ENST00000502850 CELF2O95319 508 aaKnown RBP12.86□□□□□ -0.35
NUP54-202ENST00000502850 FAM153BP0C7A2 387 aa12.86□□□□□ -0.35
NUP54-202ENST00000502850 CHRNB2P17787 502 aa12.86□□□□□ -0.35
NUP54-202ENST00000502850 COPB2P35606 906 aa12.86□□□□□ -0.35
NUP54-202ENST00000502850 DRG2P55039 364 aaKnown RBP12.86□□□□□ -0.35
NUP54-202ENST00000502850 FMO1Q01740 532 aa12.86□□□□□ -0.35
NUP54-202ENST00000502850 FAM153CQ494X1 144 aa12.86□□□□□ -0.35
NUP54-202ENST00000502850 MTERF2Q49AM1 385 aa12.86□□□□□ -0.35
NUP54-202ENST00000502850 FAM160B1Q5W0V3 765 aa12.86□□□□□ -0.35
NUP54-202ENST00000502850 SLC39A4Q6P5W5 647 aa12.86□□□□□ -0.35
NUP54-202ENST00000502850 TRIM72Q6ZMU5 477 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms