RNA–Protein interactions for RNA: ENST00000501271.2

CLIP1-204, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,426 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-204ENST00000501271 FBXO25Q8TCJ0 367 aa10.59□□□□□ -0.71
CLIP1-204ENST00000501271 DDX1Q92499 740 aaKnown RBP10.59□□□□□ -0.71
CLIP1-204ENST00000501271 HVCN1Q96D96 273 aa10.59□□□□□ -0.71
CLIP1-204ENST00000501271 CEP170P1Q96L14 293 aa10.59□□□□□ -0.71
CLIP1-204ENST00000501271 FBXL18Q96ME1 805 aa10.59□□□□□ -0.71
CLIP1-204ENST00000501271 NT5C1BQ96P26 610 aa10.59□□□□□ -0.71
CLIP1-204ENST00000501271 FAM107BQ9H098 131 aa10.59□□□□□ -0.71
CLIP1-204ENST00000501271 RAB20Q9NX57 234 aa10.59□□□□□ -0.71
CLIP1-204ENST00000501271 GRHL1Q9NZI5 618 aa10.59□□□□□ -0.71
CLIP1-204ENST00000501271 NOVA2Q9UNW9 492 aaKnown RBP10.59□□□□□ -0.71
CLIP1-204ENST00000501271 PCDHA10Q9Y5I2 948 aa10.59□□□□□ -0.71
CLIP1-204ENST00000501271 LCTP09848 1927 aa10.59□□□□□ -0.71
CLIP1-204ENST00000501271 SHBGP04278 402 aa10.59□□□□□ -0.71
CLIP1-204ENST00000501271 DLATP10515 647 aaKnown RBP10.59□□□□□ -0.71
CLIP1-204ENST00000501271 HSPA6P17066 643 aa10.59□□□□□ -0.71
CLIP1-204ENST00000501271 CHRNA3P32297 505 aa10.59□□□□□ -0.71
CLIP1-204ENST00000501271 RPL21P46778 160 aaKnown RBP10.59□□□□□ -0.71
CLIP1-204ENST00000501271 UBAP2Q5T6F2 1119 aaKnown RBP10.59□□□□□ -0.71
CLIP1-204ENST00000501271 SV2AQ7L0J3 742 aa10.59□□□□□ -0.71
CLIP1-204ENST00000501271 NLRX1Q86UT6 975 aa10.59□□□□□ -0.71
CLIP1-204ENST00000501271 PACS2Q86VP3 889 aa10.59□□□□□ -0.71
CLIP1-204ENST00000501271 VSIG10LQ86VR7 867 aa10.59□□□□□ -0.71
CLIP1-204ENST00000501271 POMGNT1Q8WZA1 660 aa10.59□□□□□ -0.71
CLIP1-204ENST00000501271 TATDN2Q93075 761 aa10.59□□□□□ -0.71
CLIP1-204ENST00000501271 MAGOHBQ96A72 148 aaKnown RBP10.59□□□□□ -0.71
CLIP1-204ENST00000501271 MFSD14AQ96MC6 490 aa10.59□□□□□ -0.71
CLIP1-204ENST00000501271 CCT8L2Q96SF2 557 aa10.59□□□□□ -0.71
CLIP1-204ENST00000501271 PI4K2AQ9BTU6 479 aa10.59□□□□□ -0.71
CLIP1-204ENST00000501271 WNT8AQ9H1J5 351 aa10.59□□□□□ -0.71
CLIP1-204ENST00000501271 PCYOX1Q9UHG3 505 aa10.59□□□□□ -0.71
CLIP1-204ENST00000501271 GTF3C4Q9UKN8 822 aa10.59□□□□□ -0.71
CLIP1-204ENST00000501271 PCDHA3Q9Y5H8 950 aa10.59□□□□□ -0.71
CLIP1-204ENST00000501271 SRCAPQ6ZRS2 3230 aa10.59□□□□□ -0.71
CLIP1-204ENST00000501271 A0A087WUV0 522 aaPredicted RBP10.58□□□□□ -0.72
CLIP1-204ENST00000501271 E7EVH7 732 aa10.58□□□□□ -0.72
CLIP1-204ENST00000501271 SPOPO43791 374 aa10.58□□□□□ -0.72
CLIP1-204ENST00000501271 GRIN3BO60391 1043 aa10.58□□□□□ -0.72
CLIP1-204ENST00000501271 RGS20O76081 388 aa10.58□□□□□ -0.72
CLIP1-204ENST00000501271 NR3C2P08235 984 aa10.58□□□□□ -0.72
CLIP1-204ENST00000501271 KCNA2P16389 499 aa10.58□□□□□ -0.72
CLIP1-204ENST00000501271 MAGOHP61326 146 aaKnown RBP10.58□□□□□ -0.72
CLIP1-204ENST00000501271 PPP2R2AP63151 447 aa10.58□□□□□ -0.72
CLIP1-204ENST00000501271 SIX1Q15475 284 aaPredicted RBP10.58□□□□□ -0.72
CLIP1-204ENST00000501271 SPDYCQ5MJ68 293 aa10.58□□□□□ -0.72
CLIP1-204ENST00000501271 CCDC137Q6PK04 289 aaKnown RBP10.58□□□□□ -0.72
CLIP1-204ENST00000501271 TMC2Q8TDI7 906 aa10.58□□□□□ -0.72
CLIP1-204ENST00000501271 SPIRE2Q8WWL2 714 aa10.58□□□□□ -0.72
CLIP1-204ENST00000501271 PPM1EQ8WY54 764 aa10.58□□□□□ -0.72
CLIP1-204ENST00000501271 KIFAP3Q92845 792 aa10.58□□□□□ -0.72
CLIP1-204ENST00000501271 PPANQ9NQ55 473 aaKnown RBP10.58□□□□□ -0.72
CLIP1-204ENST00000501271 XPNPEP1Q9NQW7 623 aa10.58□□□□□ -0.72
CLIP1-204ENST00000501271 RASAL2Q9UJF2 1139 aa10.58□□□□□ -0.72
CLIP1-204ENST00000501271 HNRNPDLO14979 420 aaKnown RBP10.58□□□□□ -0.72
CLIP1-204ENST00000501271 SORBS3O60504 671 aa10.58□□□□□ -0.72
CLIP1-204ENST00000501271 FAM107AO95990 144 aa10.58□□□□□ -0.72
CLIP1-204ENST00000501271 CCND2P30279 289 aa10.58□□□□□ -0.72
CLIP1-204ENST00000501271 LIG3P49916 1009 aa10.58□□□□□ -0.72
CLIP1-204ENST00000501271 PMS2P54278 862 aa10.58□□□□□ -0.72
CLIP1-204ENST00000501271 DRG2P55039 364 aaKnown RBP10.58□□□□□ -0.72
CLIP1-204ENST00000501271 SP4Q02446 784 aa10.58□□□□□ -0.72
CLIP1-204ENST00000501271 IFFO1Q0D2I5 559 aa10.58□□□□□ -0.72
CLIP1-204ENST00000501271 TNFAIP1Q13829 316 aa10.58□□□□□ -0.72
CLIP1-204ENST00000501271 ODF2Q5BJF6 829 aa10.58□□□□□ -0.72
CLIP1-204ENST00000501271 B4GALNT4Q76KP1 1039 aa10.58□□□□□ -0.72
CLIP1-204ENST00000501271 TAS1R3Q7RTX0 852 aa10.58□□□□□ -0.72
CLIP1-204ENST00000501271 SLC13A5Q86YT5 568 aaPredicted RBP10.58□□□□□ -0.72
CLIP1-204ENST00000501271 RDM1Q8NG50 284 aa10.58□□□□□ -0.72
CLIP1-204ENST00000501271 MORC4Q8TE76 937 aa10.58□□□□□ -0.72
CLIP1-204ENST00000501271 GPRASP2Q96D09 838 aa10.58□□□□□ -0.72
CLIP1-204ENST00000501271 SENP7Q9BQF6 1050 aa10.58□□□□□ -0.72
CLIP1-204ENST00000501271 NTPCRQ9BSD7 190 aaKnown RBP10.58□□□□□ -0.72
CLIP1-204ENST00000501271 PAGR1Q9BTK6 254 aa10.58□□□□□ -0.72
CLIP1-204ENST00000501271 ATXN2Q99700 1313 aaKnown RBP10.57□□□□□ -0.72
CLIP1-204ENST00000501271 SRRM3A6NNA2 597 aaPredicted RBP10.57□□□□□ -0.72
CLIP1-204ENST00000501271 CAND2O75155 1236 aa10.57□□□□□ -0.72
CLIP1-204ENST00000501271 GGPS1O95749 300 aa10.57□□□□□ -0.72
CLIP1-204ENST00000501271 NUDT17P0C025 328 aa10.57□□□□□ -0.72
CLIP1-204ENST00000501271 RARAP10276 462 aa10.57□□□□□ -0.72
CLIP1-204ENST00000501271 ZNF280AP59817 542 aaPredicted RBP10.57□□□□□ -0.72
CLIP1-204ENST00000501271 LLGL1Q15334 1064 aa10.57□□□□□ -0.72
CLIP1-204ENST00000501271 CYP1B1Q16678 543 aa10.57□□□□□ -0.72
CLIP1-204ENST00000501271 SNRNP48Q6IEG0 339 aaKnown RBP10.57□□□□□ -0.72
CLIP1-204ENST00000501271 SWSAP1Q6NVH7 229 aa10.57□□□□□ -0.72
CLIP1-204ENST00000501271 CCDC60Q8IWA6 550 aaPredicted RBP10.57□□□□□ -0.72
CLIP1-204ENST00000501271 GPD1LQ8N335 351 aa10.57□□□□□ -0.72
CLIP1-204ENST00000501271 REPS2Q8NFH8 660 aa10.57□□□□□ -0.72
CLIP1-204ENST00000501271 RNF25Q96BH1 459 aaPredicted RBP10.57□□□□□ -0.72
CLIP1-204ENST00000501271 TLCD1Q96CP7 247 aa10.57□□□□□ -0.72
CLIP1-204ENST00000501271 FAM213AQ9BRX8 229 aa10.57□□□□□ -0.72
CLIP1-204ENST00000501271 PABPC3Q9H361 631 aaKnown RBP10.57□□□□□ -0.72
CLIP1-204ENST00000501271 UVRAGQ9P2Y5 699 aa10.57□□□□□ -0.72
CLIP1-204ENST00000501271 SEPT9Q9UHD8 586 aaPredicted RBP10.57□□□□□ -0.72
CLIP1-204ENST00000501271 TRAPPC3O43617 180 aa10.57□□□□□ -0.72
CLIP1-204ENST00000501271 ERLIN2O94905 339 aa10.57□□□□□ -0.72
CLIP1-204ENST00000501271 CPP00450 1065 aa10.57□□□□□ -0.72
CLIP1-204ENST00000501271 KRT5P13647 590 aa10.57□□□□□ -0.72
CLIP1-204ENST00000501271 GTF2H1P32780 548 aa10.57□□□□□ -0.72
CLIP1-204ENST00000501271 COILP38432 576 aaPredicted RBP10.57□□□□□ -0.72
CLIP1-204ENST00000501271 KCNJ1P48048 391 aa10.57□□□□□ -0.72
CLIP1-204ENST00000501271 EIF3BP55884 814 aaKnown RBP10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms