RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 GIT2Q14161 759 aa27.1■■□□□ 1.93
UPF3A-209ENST00000492270 FOXD4L6Q3SYB3 417 aaPredicted RBP27.1■■□□□ 1.93
UPF3A-209ENST00000492270 FOXD4L3Q6VB84 417 aaPredicted RBP27.1■■□□□ 1.93
UPF3A-209ENST00000492270 ZBTB33Q86T24 672 aa27.1■■□□□ 1.93
UPF3A-209ENST00000492270 KRI1Q8N9T8 703 aaKnown RBP27.1■■□□□ 1.93
UPF3A-209ENST00000492270 MORC2Q9Y6X9 1032 aaPredicted RBP27.1■■□□□ 1.93
UPF3A-209ENST00000492270 ABLIM1O14639 778 aa27.09■■□□□ 1.93
UPF3A-209ENST00000492270 CLASP2O75122 1294 aaKnown RBP27.09■■□□□ 1.93
UPF3A-209ENST00000492270 ZSCAN22P10073 491 aaPredicted RBP27.09■■□□□ 1.93
UPF3A-209ENST00000492270 NCKAP1LP55160 1127 aa27.09■■□□□ 1.93
UPF3A-209ENST00000492270 COASYQ13057 564 aa27.09■■□□□ 1.93
UPF3A-209ENST00000492270 STK38Q15208 465 aa27.09■■□□□ 1.93
UPF3A-209ENST00000492270 PTPN14Q15678 1187 aa27.09■■□□□ 1.93
UPF3A-209ENST00000492270 TAS1R1Q7RTX1 841 aa27.09■■□□□ 1.93
UPF3A-209ENST00000492270 LINC00301Q8NCQ3 95 aa27.09■■□□□ 1.93
UPF3A-209ENST00000492270 SMRP1Q8NCR6 262 aa27.09■■□□□ 1.93
UPF3A-209ENST00000492270 ZBTB45Q96K62 511 aaPredicted RBP27.09■■□□□ 1.93
UPF3A-209ENST00000492270 PAAF1Q9BRP4 392 aa27.09■■□□□ 1.93
UPF3A-209ENST00000492270 LARSQ9P2J5 1176 aaKnown RBP27.09■■□□□ 1.93
UPF3A-209ENST00000492270 CCDC39Q9UFE4 941 aa27.09■■□□□ 1.93
UPF3A-209ENST00000492270 IRAK3Q9Y616 596 aa27.09■■□□□ 1.93
UPF3A-209ENST00000492270 VWA8A3KMH1 1905 aa27.08■■□□□ 1.93
UPF3A-209ENST00000492270 FSD2A1L4K1 749 aa27.08■■□□□ 1.93
UPF3A-209ENST00000492270 FAM13AO94988 1023 aa27.08■■□□□ 1.93
UPF3A-209ENST00000492270 EFEMP2O95967 443 aa27.08■■□□□ 1.93
UPF3A-209ENST00000492270 F13A1P00488 732 aa27.08■■□□□ 1.93
UPF3A-209ENST00000492270 KRT18P05783 430 aaKnown RBP27.08■■□□□ 1.93
UPF3A-209ENST00000492270 PROZP22891 400 aa27.08■■□□□ 1.93
UPF3A-209ENST00000492270 DDIT3P35638 169 aa27.08■■□□□ 1.93
UPF3A-209ENST00000492270 OSTNP61366 133 aa27.08■■□□□ 1.93
UPF3A-209ENST00000492270 STRN3Q13033 797 aa27.08■■□□□ 1.93
UPF3A-209ENST00000492270 BMS1Q14692 1282 aaKnown RBP27.08■■□□□ 1.93
UPF3A-209ENST00000492270 NAB2Q15742 525 aa27.08■■□□□ 1.93
UPF3A-209ENST00000492270 SMAD2Q15796 467 aaKnown RBP27.08■■□□□ 1.93
UPF3A-209ENST00000492270 HCFC2Q9Y5Z7 792 aa27.08■■□□□ 1.93
UPF3A-209ENST00000492270 A0A087X0B3 334 aa27.07■■□□□ 1.92
UPF3A-209ENST00000492270 CASTOR2A6NHX0 329 aa27.07■■□□□ 1.92
UPF3A-209ENST00000492270 SOD2P04179 222 aa27.07■■□□□ 1.92
UPF3A-209ENST00000492270 HARSP12081 509 aaKnown RBP27.07■■□□□ 1.92
UPF3A-209ENST00000492270 TXLNAP40222 546 aa27.07■■□□□ 1.92
UPF3A-209ENST00000492270 ZNF131P52739 623 aa27.07■■□□□ 1.92
UPF3A-209ENST00000492270 TUSC3Q13454 348 aa27.07■■□□□ 1.92
UPF3A-209ENST00000492270 GLRA4Q5JXX5 417 aa27.07■■□□□ 1.92
UPF3A-209ENST00000492270 TMEM184AQ6ZMB5 413 aa27.07■■□□□ 1.92
UPF3A-209ENST00000492270 HAUS6Q7Z4H7 955 aa27.07■■□□□ 1.92
UPF3A-209ENST00000492270 RNF168Q8IYW5 571 aaPredicted RBP27.07■■□□□ 1.92
UPF3A-209ENST00000492270 MYCT1Q8N699 235 aa27.07■■□□□ 1.92
UPF3A-209ENST00000492270 ZNF396Q96N95 335 aaPredicted RBP27.07■■□□□ 1.92
UPF3A-209ENST00000492270 HERC2P3Q9BVR0 1158 aa27.07■■□□□ 1.92
UPF3A-209ENST00000492270 ZHX3Q9H4I2 956 aa27.07■■□□□ 1.92
UPF3A-209ENST00000492270 STK17AQ9UEE5 414 aa27.07■■□□□ 1.92
UPF3A-209ENST00000492270 FAM50BQ9Y247 325 aa27.07■■□□□ 1.92
UPF3A-209ENST00000492270 C2CD2LO14523 706 aa27.06■■□□□ 1.92
UPF3A-209ENST00000492270 NR1I2O75469 434 aa27.06■■□□□ 1.92
UPF3A-209ENST00000492270 THP07101 528 aa27.06■■□□□ 1.92
UPF3A-209ENST00000492270 GRM5P41594 1212 aa27.06■■□□□ 1.92
UPF3A-209ENST00000492270 RRAGBQ5VZM2 374 aa27.06■■□□□ 1.92
UPF3A-209ENST00000492270 ANKRD54Q6NXT1 300 aa27.06■■□□□ 1.92
UPF3A-209ENST00000492270 MPZL3Q6UWV2 235 aa27.06■■□□□ 1.92
UPF3A-209ENST00000492270 APBB1IPQ7Z5R6 666 aaPredicted RBP27.06■■□□□ 1.92
UPF3A-209ENST00000492270 TCHPQ9BT92 498 aa27.06■■□□□ 1.92
UPF3A-209ENST00000492270 COLEC11Q9BWP8 271 aa27.06■■□□□ 1.92
UPF3A-209ENST00000492270 APOL5Q9BWW9 433 aa27.06■■□□□ 1.92
UPF3A-209ENST00000492270 PANK2Q9BZ23 570 aa27.06■■□□□ 1.92
UPF3A-209ENST00000492270 PARVGQ9HBI0 331 aa27.06■■□□□ 1.92
UPF3A-209ENST00000492270 ANKFY1Q9P2R3 1169 aa27.06■■□□□ 1.92
UPF3A-209ENST00000492270 KCNG1Q9UIX4 513 aa27.06■■□□□ 1.92
UPF3A-209ENST00000492270 K7ENM7 598 aa27.05■■□□□ 1.92
UPF3A-209ENST00000492270 SPTLC2O15270 562 aa27.05■■□□□ 1.92
UPF3A-209ENST00000492270 TBCAO75347 108 aaKnown RBP27.05■■□□□ 1.92
UPF3A-209ENST00000492270 MCF2P10911 925 aa27.05■■□□□ 1.92
UPF3A-209ENST00000492270 SYCE2Q6PIF2 218 aa27.05■■□□□ 1.92
UPF3A-209ENST00000492270 HASPINQ8TF76 798 aa27.05■■□□□ 1.92
UPF3A-209ENST00000492270 KHSRPQ92945 711 aaKnown RBP eCLIP27.05■■□□□ 1.92
UPF3A-209ENST00000492270 B3GALT6Q96L58 329 aa27.05■■□□□ 1.92
UPF3A-209ENST00000492270 GPR62Q9BZJ7 368 aa27.05■■□□□ 1.92
UPF3A-209ENST00000492270 ADAM28Q9UKQ2 775 aa27.05■■□□□ 1.92
UPF3A-209ENST00000492270 USP15Q9Y4E8 981 aaPredicted RBP27.05■■□□□ 1.92
UPF3A-209ENST00000492270 LILRB3O75022 631 aa27.04■■□□□ 1.92
UPF3A-209ENST00000492270 SRGAP2BP0DMP2 458 aa27.04■■□□□ 1.92
UPF3A-209ENST00000492270 EPCAMP16422 314 aa27.04■■□□□ 1.92
UPF3A-209ENST00000492270 ZP2Q05996 745 aa27.04■■□□□ 1.92
UPF3A-209ENST00000492270 HSP90AA2PQ14568 343 aaPredicted RBP27.04■■□□□ 1.92
UPF3A-209ENST00000492270 SEZ6Q53EL9 994 aa27.04■■□□□ 1.92
UPF3A-209ENST00000492270 FUT10Q6P4F1 479 aa27.04■■□□□ 1.92
UPF3A-209ENST00000492270 DYMQ7RTS9 669 aa27.04■■□□□ 1.92
UPF3A-209ENST00000492270 PPP1R10Q96QC0 940 aaKnown RBP27.04■■□□□ 1.92
UPF3A-209ENST00000492270 FIZ1Q96SL8 496 aa27.04■■□□□ 1.92
UPF3A-209ENST00000492270 CCDC94Q9BW85 323 aaPredicted RBP27.04■■□□□ 1.92
UPF3A-209ENST00000492270 HAPLN2Q9GZV7 340 aa27.04■■□□□ 1.92
UPF3A-209ENST00000492270 STK39Q9UEW8 545 aa27.04■■□□□ 1.92
UPF3A-209ENST00000492270 MTCL1Q9Y4B5 1905 aaKnown RBP27.04■■□□□ 1.92
UPF3A-209ENST00000492270 C2orf16Q68DN1 1984 aa27.04■■□□□ 1.92
UPF3A-209ENST00000492270 MEFVO15553 781 aaPredicted RBP27.03■■□□□ 1.92
UPF3A-209ENST00000492270 TRAK2O60296 914 aa27.03■■□□□ 1.92
UPF3A-209ENST00000492270 TOM1L1O75674 476 aa27.03■■□□□ 1.92
UPF3A-209ENST00000492270 KIF4AO95239 1232 aa27.03■■□□□ 1.92
UPF3A-209ENST00000492270 BRD1O95696 1058 aa27.03■■□□□ 1.92
UPF3A-209ENST00000492270 URODP06132 367 aa27.03■■□□□ 1.92
UPF3A-209ENST00000492270 CNPP09543 421 aaKnown RBP27.03■■□□□ 1.92
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms