RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 PRPF38AQ8NAV1 312 aaKnown RBP17.41■□□□□ 0.38
COL7A1-210ENST00000487017 BEST2Q8NFU1 509 aa17.41■□□□□ 0.38
COL7A1-210ENST00000487017 PITPNM2Q9BZ72 1349 aa17.41■□□□□ 0.38
COL7A1-210ENST00000487017 SMG5Q9UPR3 1016 aaKnown RBP17.41■□□□□ 0.38
COL7A1-210ENST00000487017 CIITAP33076 1130 aa17.41■□□□□ 0.38
COL7A1-210ENST00000487017 ZNF543Q08ER8 600 aa17.41■□□□□ 0.38
COL7A1-210ENST00000487017 FAM102AQ5T9C2 384 aaPredicted RBP17.41■□□□□ 0.38
COL7A1-210ENST00000487017 HNRNPLLQ8WVV9 542 aaKnown RBP17.41■□□□□ 0.38
COL7A1-210ENST00000487017 TIPINQ9BVW5 301 aa17.41■□□□□ 0.38
COL7A1-210ENST00000487017 L3MBTL1Q9Y468 752 aa17.41■□□□□ 0.38
COL7A1-210ENST00000487017 RAD51CO43502 376 aa17.41■□□□□ 0.38
COL7A1-210ENST00000487017 C21orf2O43822 256 aa17.41■□□□□ 0.38
COL7A1-210ENST00000487017 HUS1O60921 280 aa17.41■□□□□ 0.38
COL7A1-210ENST00000487017 MYCP01106 439 aaPredicted RBP17.41■□□□□ 0.38
COL7A1-210ENST00000487017 ADRA2BP18089 450 aa17.41■□□□□ 0.38
COL7A1-210ENST00000487017 ITIH2P19823 946 aa17.41■□□□□ 0.38
COL7A1-210ENST00000487017 HSPBP1Q9NZL4 362 aa17.41■□□□□ 0.38
COL7A1-210ENST00000487017 HPS5Q9UPZ3 1129 aa17.41■□□□□ 0.38
COL7A1-210ENST00000487017 CEP152O94986 1710 aa17.41■□□□□ 0.38
COL7A1-210ENST00000487017 CREB3O43889 395 aa17.41■□□□□ 0.38
COL7A1-210ENST00000487017 NKX1-1Q15270 411 aaPredicted RBP17.41■□□□□ 0.38
COL7A1-210ENST00000487017 NOA1Q8NC60 698 aaKnown RBP17.41■□□□□ 0.38
COL7A1-210ENST00000487017 ARHGEF1Q92888 912 aaKnown RBP17.41■□□□□ 0.38
COL7A1-210ENST00000487017 SMARCAL1Q9NZC9 954 aa17.41■□□□□ 0.38
COL7A1-210ENST00000487017 STAP1Q9ULZ2 295 aa17.41■□□□□ 0.38
COL7A1-210ENST00000487017 YWHABP31946 246 aaKnown RBP17.41■□□□□ 0.38
COL7A1-210ENST00000487017 MORF4L2Q15014 288 aa17.41■□□□□ 0.38
COL7A1-210ENST00000487017 RHPN2Q8IUC4 686 aa17.41■□□□□ 0.38
COL7A1-210ENST00000487017 OVOS2A0A0G2JMS6 1433 aa17.4■□□□□ 0.38
COL7A1-210ENST00000487017 OVOS2A0A0J9YW53 1432 aa17.4■□□□□ 0.38
COL7A1-210ENST00000487017 OVOS2Q6IE36 1432 aa17.4■□□□□ 0.38
COL7A1-210ENST00000487017 CNTNAP5Q8WYK1 1306 aa17.4■□□□□ 0.38
COL7A1-210ENST00000487017 HNRNPCL1O60812 293 aaKnown RBP17.4■□□□□ 0.38
COL7A1-210ENST00000487017 REXO1L1PQ8IX06 675 aa17.4■□□□□ 0.38
COL7A1-210ENST00000487017 RCOR2Q8IZ40 523 aa17.4■□□□□ 0.38
COL7A1-210ENST00000487017 SUGT1Q9Y2Z0 365 aa17.4■□□□□ 0.38
COL7A1-210ENST00000487017 FHOD1Q9Y613 1164 aa17.4■□□□□ 0.38
COL7A1-210ENST00000487017 PTPRUQ92729 1446 aa17.4■□□□□ 0.38
COL7A1-210ENST00000487017 TBX3O15119 743 aa17.4■□□□□ 0.38
COL7A1-210ENST00000487017 ANO5Q75V66 913 aa17.4■□□□□ 0.38
COL7A1-210ENST00000487017 XPO6Q96QU8 1125 aaKnown RBP17.4■□□□□ 0.38
COL7A1-210ENST00000487017 WWP1Q9H0M0 922 aa17.4■□□□□ 0.38
COL7A1-210ENST00000487017 PCDHA10Q9Y5I2 948 aa17.4■□□□□ 0.38
COL7A1-210ENST00000487017 CDH6P55285 790 aa17.4■□□□□ 0.38
COL7A1-210ENST00000487017 HABP4Q5JVS0 413 aaKnown RBP17.4■□□□□ 0.38
COL7A1-210ENST00000487017 CCNYL1Q8N7R7 359 aa17.4■□□□□ 0.38
COL7A1-210ENST00000487017 ZIM3Q96PE6 472 aa17.4■□□□□ 0.38
COL7A1-210ENST00000487017 YY1AP1Q9H869 796 aa17.4■□□□□ 0.38
COL7A1-210ENST00000487017 RFX5P48382 616 aaPredicted RBP17.4■□□□□ 0.38
COL7A1-210ENST00000487017 KLK7P49862 253 aa17.4■□□□□ 0.38
COL7A1-210ENST00000487017 KIAA1841Q6NSI8 718 aa17.4■□□□□ 0.38
COL7A1-210ENST00000487017 CEP70Q8NHQ1 597 aa17.4■□□□□ 0.38
COL7A1-210ENST00000487017 TTC8Q8TAM2 541 aa17.4■□□□□ 0.38
COL7A1-210ENST00000487017 SUCLA2Q9P2R7 463 aaPredicted RBP17.4■□□□□ 0.38
COL7A1-210ENST00000487017 LSP1P33241 339 aa17.39■□□□□ 0.38
COL7A1-210ENST00000487017 PPP4R4Q6NUP7 873 aa17.39■□□□□ 0.38
COL7A1-210ENST00000487017 C1orf228Q6PIY5 440 aa17.39■□□□□ 0.38
COL7A1-210ENST00000487017 CDH16O75309 829 aa17.39■□□□□ 0.37
COL7A1-210ENST00000487017 ZFXP17010 805 aaPredicted RBP17.39■□□□□ 0.37
COL7A1-210ENST00000487017 LONRF1Q17RB8 773 aa17.39■□□□□ 0.37
COL7A1-210ENST00000487017 ANKMY2Q8IV38 441 aa17.39■□□□□ 0.37
COL7A1-210ENST00000487017 BFARQ9NZS9 450 aa17.39■□□□□ 0.37
COL7A1-210ENST00000487017 USP15Q9Y4E8 981 aaPredicted RBP17.39■□□□□ 0.37
COL7A1-210ENST00000487017 ZHX2Q9Y6X8 837 aa17.39■□□□□ 0.37
COL7A1-210ENST00000487017 INO80Q9ULG1 1556 aaPredicted RBP17.39■□□□□ 0.37
COL7A1-210ENST00000487017 PHF20L1A8MW92 1017 aa17.39■□□□□ 0.37
COL7A1-210ENST00000487017 SSTR3P32745 418 aaPredicted RBP17.39■□□□□ 0.37
COL7A1-210ENST00000487017 AP1B1Q10567 949 aa17.39■□□□□ 0.37
COL7A1-210ENST00000487017 DUOXA2Q1HG44 320 aa17.39■□□□□ 0.37
COL7A1-210ENST00000487017 TMEM259Q4ZIN3 620 aa17.39■□□□□ 0.37
COL7A1-210ENST00000487017 DALRD3Q5D0E6 543 aaKnown RBP17.39■□□□□ 0.37
COL7A1-210ENST00000487017 FBXW10Q5XX13 1052 aa17.39■□□□□ 0.37
COL7A1-210ENST00000487017 L2HGDHQ9H9P8 463 aa17.39■□□□□ 0.37
COL7A1-210ENST00000487017 FLT1P17948 1338 aa17.39■□□□□ 0.37
COL7A1-210ENST00000487017 A0A0G2JLW4 131 aa17.39■□□□□ 0.37
COL7A1-210ENST00000487017 P3H1Q32P28 736 aa17.39■□□□□ 0.37
COL7A1-210ENST00000487017 ANGPTL8Q6UXH0 198 aa17.39■□□□□ 0.37
COL7A1-210ENST00000487017 LDHDQ86WU2 507 aa17.39■□□□□ 0.37
COL7A1-210ENST00000487017 USP38Q8NB14 1042 aa17.39■□□□□ 0.37
COL7A1-210ENST00000487017 OR2W6PQ8NHA6 318 aa17.39■□□□□ 0.37
COL7A1-210ENST00000487017 SEC16BQ96JE7 1060 aa17.39■□□□□ 0.37
COL7A1-210ENST00000487017 FAM217BQ9NTX9 383 aaPredicted RBP17.39■□□□□ 0.37
COL7A1-210ENST00000487017 GGT7Q9UJ14 662 aa17.39■□□□□ 0.37
COL7A1-210ENST00000487017 F5H423 210 aaPredicted RBP17.39■□□□□ 0.37
COL7A1-210ENST00000487017 KIAA0391O15091 583 aaKnown RBP17.39■□□□□ 0.37
COL7A1-210ENST00000487017 EIF3EP60228 445 aaKnown RBP17.39■□□□□ 0.37
COL7A1-210ENST00000487017 ITPRIPL1Q6GPH6 555 aa17.39■□□□□ 0.37
COL7A1-210ENST00000487017 ICA1LQ8NDH6 482 aa17.39■□□□□ 0.37
COL7A1-210ENST00000487017 ISCUQ9H1K1 167 aa17.39■□□□□ 0.37
COL7A1-210ENST00000487017 FAM8A1Q9UBU6 413 aa17.39■□□□□ 0.37
COL7A1-210ENST00000487017 APOL1O14791 398 aa17.38■□□□□ 0.37
COL7A1-210ENST00000487017 SEPT12Q8IYM1 358 aa17.38■□□□□ 0.37
COL7A1-210ENST00000487017 DHX35Q9H5Z1 703 aaKnown RBP17.38■□□□□ 0.37
COL7A1-210ENST00000487017 CYP4F11Q9HBI6 524 aa17.38■□□□□ 0.37
COL7A1-210ENST00000487017 HERC5Q9UII4 1024 aaKnown RBP17.38■□□□□ 0.37
COL7A1-210ENST00000487017 TRIM66O15016 1216 aa17.38■□□□□ 0.37
COL7A1-210ENST00000487017 MYBP10242 640 aa17.38■□□□□ 0.37
COL7A1-210ENST00000487017 TYK2P29597 1187 aa17.38■□□□□ 0.37
COL7A1-210ENST00000487017 CYFIP1Q7L576 1253 aa17.38■□□□□ 0.37
COL7A1-210ENST00000487017 MARCH10Q8NA82 808 aaPredicted RBP17.38■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms