RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 RINT1Q6NUQ1 792 aa18.38■□□□□ 0.53
USP40-212ENST00000473191 PRSS55Q6UWB4 352 aaPredicted RBP18.38■□□□□ 0.53
USP40-212ENST00000473191 C1orf186Q6ZWK4 172 aa18.38■□□□□ 0.53
USP40-212ENST00000473191 HACE1Q8IYU2 909 aa18.38■□□□□ 0.53
USP40-212ENST00000473191 ASIC4Q96FT7 647 aa18.38■□□□□ 0.53
USP40-212ENST00000473191 COLEC11Q9BWP8 271 aa18.38■□□□□ 0.53
USP40-212ENST00000473191 RXFP1Q9HBX9 757 aa18.38■□□□□ 0.53
USP40-212ENST00000473191 DZANK1Q9NVP4 752 aa18.38■□□□□ 0.53
USP40-212ENST00000473191 ADAM28Q9UKQ2 775 aa18.38■□□□□ 0.53
USP40-212ENST00000473191 VWA3AA6NCI4 1184 aa18.37■□□□□ 0.53
USP40-212ENST00000473191 CCDC169A6NNP5 214 aa18.37■□□□□ 0.53
USP40-212ENST00000473191 MTHFRP42898 656 aa18.37■□□□□ 0.53
USP40-212ENST00000473191 GRIN1Q05586 938 aa18.37■□□□□ 0.53
USP40-212ENST00000473191 PPP2R5AQ15172 486 aa18.37■□□□□ 0.53
USP40-212ENST00000473191 ATAT1Q5SQI0 421 aa18.37■□□□□ 0.53
USP40-212ENST00000473191 IER5LQ5T953 404 aa18.37■□□□□ 0.53
USP40-212ENST00000473191 ATF7IP2Q5U623 682 aa18.37■□□□□ 0.53
USP40-212ENST00000473191 GPR149Q86SP6 731 aa18.37■□□□□ 0.53
USP40-212ENST00000473191 PPFIBP1Q86W92 1011 aa18.37■□□□□ 0.53
USP40-212ENST00000473191 PALB2Q86YC2 1186 aa18.37■□□□□ 0.53
USP40-212ENST00000473191 KIFAP3Q92845 792 aa18.37■□□□□ 0.53
USP40-212ENST00000473191 IFT74Q96LB3 600 aa18.37■□□□□ 0.53
USP40-212ENST00000473191 RIPOR3Q96MK2 946 aa18.37■□□□□ 0.53
USP40-212ENST00000473191 NECTIN4Q96NY8 510 aa18.37■□□□□ 0.53
USP40-212ENST00000473191 SFXN1Q9H9B4 322 aa18.37■□□□□ 0.53
USP40-212ENST00000473191 DNM3Q9UQ16 869 aa18.37■□□□□ 0.53
USP40-212ENST00000473191 NPHP3-ACAD11A0A0J9YXS1 232 aa18.36■□□□□ 0.53
USP40-212ENST00000473191 H3BQV1 296 aa18.36■□□□□ 0.53
USP40-212ENST00000473191 LAD1O00515 517 aa18.36■□□□□ 0.53
USP40-212ENST00000473191 MEFVO15553 781 aaPredicted RBP18.36■□□□□ 0.53
USP40-212ENST00000473191 BRD1O95696 1058 aa18.36■□□□□ 0.53
USP40-212ENST00000473191 CACNB1Q02641 598 aaPredicted RBP18.36■□□□□ 0.53
USP40-212ENST00000473191 TUSC3Q13454 348 aa18.36■□□□□ 0.53
USP40-212ENST00000473191 HSP90AA2PQ14568 343 aaPredicted RBP18.36■□□□□ 0.53
USP40-212ENST00000473191 RILPL1Q5EBL4 403 aa18.36■□□□□ 0.53
USP40-212ENST00000473191 TMEM130Q8N3G9 435 aa18.36■□□□□ 0.53
USP40-212ENST00000473191 KREMEN2Q8NCW0 462 aa18.36■□□□□ 0.53
USP40-212ENST00000473191 RIN2Q8WYP3 895 aaPredicted RBP18.36■□□□□ 0.53
USP40-212ENST00000473191 PBXIP1Q96AQ6 731 aa18.36■□□□□ 0.53
USP40-212ENST00000473191 GOLGA2P5Q9HBQ8 144 aa18.36■□□□□ 0.53
USP40-212ENST00000473191 LIMD1Q9UGP4 676 aa18.36■□□□□ 0.53
USP40-212ENST00000473191 NR2E1Q9Y466 385 aa18.36■□□□□ 0.53
USP40-212ENST00000473191 TRIP11Q15643 1979 aa18.35■□□□□ 0.53
USP40-212ENST00000473191 ZMYM2Q9UBW7 1377 aa18.35■□□□□ 0.53
USP40-212ENST00000473191 SPDYE4A6NLX3 237 aa18.35■□□□□ 0.53
USP40-212ENST00000473191 K7ERI5 159 aa18.35■□□□□ 0.53
USP40-212ENST00000473191 SLC16A4O15374 487 aa18.35■□□□□ 0.53
USP40-212ENST00000473191 TGM5O43548 720 aa18.35■□□□□ 0.53
USP40-212ENST00000473191 N4BP1O75113 896 aaKnown RBP18.35■□□□□ 0.53
USP40-212ENST00000473191 TADA2AO75478 443 aa18.35■□□□□ 0.53
USP40-212ENST00000473191 THP07101 528 aa18.35■□□□□ 0.53
USP40-212ENST00000473191 OSTNP61366 133 aa18.35■□□□□ 0.53
USP40-212ENST00000473191 SIGLEC14Q08ET2 396 aa18.35■□□□□ 0.53
USP40-212ENST00000473191 HYIQ5T013 277 aa18.35■□□□□ 0.53
USP40-212ENST00000473191 CD300LGQ6UXG3 332 aa18.35■□□□□ 0.53
USP40-212ENST00000473191 ZBTB45Q96K62 511 aaPredicted RBP18.35■□□□□ 0.53
USP40-212ENST00000473191 ACO2Q99798 780 aaKnown RBP18.35■□□□□ 0.53
USP40-212ENST00000473191 ADPGKQ9BRR6 497 aa18.35■□□□□ 0.53
USP40-212ENST00000473191 TARS2Q9BW92 718 aaKnown RBP18.35■□□□□ 0.53
USP40-212ENST00000473191 RAB34Q9BZG1 259 aa18.35■□□□□ 0.53
USP40-212ENST00000473191 CDT1Q9H211 546 aa18.35■□□□□ 0.53
USP40-212ENST00000473191 PTPRHQ9HD43 1115 aa18.35■□□□□ 0.53
USP40-212ENST00000473191 ARHGAP28Q9P2N2 729 aa18.35■□□□□ 0.53
USP40-212ENST00000473191 STK39Q9UEW8 545 aa18.35■□□□□ 0.53
USP40-212ENST00000473191 SMC3Q9UQE7 1217 aa18.35■□□□□ 0.53
USP40-212ENST00000473191 ARIH1Q9Y4X5 557 aaPredicted RBP18.35■□□□□ 0.53
USP40-212ENST00000473191 VWA8A3KMH1 1905 aa18.35■□□□□ 0.53
USP40-212ENST00000473191 MYO10Q9HD67 2058 aa18.34■□□□□ 0.53
USP40-212ENST00000473191 CCDC195A0A1B0GUA6 201 aa18.34■□□□□ 0.53
USP40-212ENST00000473191 ABLIM1O14639 778 aa18.34■□□□□ 0.53
USP40-212ENST00000473191 ADAM12O43184 909 aa18.34■□□□□ 0.53
USP40-212ENST00000473191 NR1I2O75469 434 aa18.34■□□□□ 0.53
USP40-212ENST00000473191 GLUD1P00367 558 aa18.34■□□□□ 0.53
USP40-212ENST00000473191 ADH1AP07327 375 aa18.34■□□□□ 0.53
USP40-212ENST00000473191 EFNA5P52803 228 aa18.34■□□□□ 0.53
USP40-212ENST00000473191 SLC12A3P55017 1021 aa18.34■□□□□ 0.53
USP40-212ENST00000473191 VCPP55072 806 aaKnown RBP18.34■□□□□ 0.53
USP40-212ENST00000473191 SOX4Q06945 474 aaPredicted RBP18.34■□□□□ 0.53
USP40-212ENST00000473191 USP41Q3LFD5 358 aa18.34■□□□□ 0.53
USP40-212ENST00000473191 LARP1BQ659C4 914 aaKnown RBP18.34■□□□□ 0.53
USP40-212ENST00000473191 BMP8AQ7Z5Y6 402 aa18.34■□□□□ 0.53
USP40-212ENST00000473191 ZBTB33Q86T24 672 aa18.34■□□□□ 0.53
USP40-212ENST00000473191 C3orf58Q8NDZ4 430 aa18.34■□□□□ 0.53
USP40-212ENST00000473191 UPF2Q9HAU5 1272 aaKnown RBP18.34■□□□□ 0.53
USP40-212ENST00000473191 KMT5AQ9NQR1 393 aa18.34■□□□□ 0.53
USP40-212ENST00000473191 TNFSF13BQ9Y275 285 aa18.34■□□□□ 0.53
USP40-212ENST00000473191 KIF3AQ9Y496 699 aa18.34■□□□□ 0.53
USP40-212ENST00000473191 KMT2EQ8IZD2 1858 aa18.34■□□□□ 0.53
USP40-212ENST00000473191 PHLPP2Q6ZVD8 1323 aa18.33■□□□□ 0.53
USP40-212ENST00000473191 CLCNKBP51801 687 aa18.33■□□□□ 0.52
USP40-212ENST00000473191 DCAF4L1Q3SXM0 396 aa18.33■□□□□ 0.52
USP40-212ENST00000473191 SEZ6Q53EL9 994 aa18.33■□□□□ 0.52
USP40-212ENST00000473191 ARSHQ5FYA8 562 aa18.33■□□□□ 0.52
USP40-212ENST00000473191 FAM171A1Q5VUB5 890 aa18.33■□□□□ 0.52
USP40-212ENST00000473191 LILRA6Q6PI73 481 aa18.33■□□□□ 0.52
USP40-212ENST00000473191 CEP57Q86XR8 500 aa18.33■□□□□ 0.52
USP40-212ENST00000473191 SYT2Q8N9I0 419 aaPredicted RBP18.33■□□□□ 0.52
USP40-212ENST00000473191 TDRD5Q8NAT2 981 aaKnown RBP18.33■□□□□ 0.52
USP40-212ENST00000473191 LNX1Q8TBB1 728 aaPredicted RBP18.33■□□□□ 0.52
USP40-212ENST00000473191 ZNF707Q96C28 371 aaPredicted RBP18.33■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms