RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 TBC1D13Q9NVG8 400 aa13.06□□□□□ -0.32
VPS13D-204ENST00000469054 KLK14Q9P0G3 267 aa13.06□□□□□ -0.32
VPS13D-204ENST00000469054 GDAQ9Y2T3 454 aa13.06□□□□□ -0.32
VPS13D-204ENST00000469054 RWDD3Q9Y3V2 267 aa13.06□□□□□ -0.32
VPS13D-204ENST00000469054 PCDHA5Q9Y5H7 936 aa13.06□□□□□ -0.32
VPS13D-204ENST00000469054 UBE4BO95155 1302 aa13.06□□□□□ -0.32
VPS13D-204ENST00000469054 ZMYM2Q9UBW7 1377 aa13.06□□□□□ -0.32
VPS13D-204ENST00000469054 OGTO15294 1046 aa13.05□□□□□ -0.32
VPS13D-204ENST00000469054 POMCP01189 267 aa13.05□□□□□ -0.32
VPS13D-204ENST00000469054 ADSSP30520 456 aa13.05□□□□□ -0.32
VPS13D-204ENST00000469054 BMPR1AP36894 532 aa13.05□□□□□ -0.32
VPS13D-204ENST00000469054 YARSP54577 528 aaKnown RBP13.05□□□□□ -0.32
VPS13D-204ENST00000469054 KNOP1Q1ED39 458 aaKnown RBP13.05□□□□□ -0.32
VPS13D-204ENST00000469054 SPOUT1Q5T280 376 aaKnown RBP13.05□□□□□ -0.32
VPS13D-204ENST00000469054 SPRED2Q7Z698 418 aa13.05□□□□□ -0.32
VPS13D-204ENST00000469054 NELFCDQ8IXH7 590 aa13.05□□□□□ -0.32
VPS13D-204ENST00000469054 TMEM192Q8IY95 271 aa13.05□□□□□ -0.32
VPS13D-204ENST00000469054 GSTCDQ8NEC7 633 aa13.05□□□□□ -0.32
VPS13D-204ENST00000469054 ARNTL2Q8WYA1 636 aa13.05□□□□□ -0.32
VPS13D-204ENST00000469054 POMGNT1Q8WZA1 660 aa13.05□□□□□ -0.32
VPS13D-204ENST00000469054 ZFP42Q96MM3 310 aa13.05□□□□□ -0.32
VPS13D-204ENST00000469054 FAM161BQ96MY7 647 aa13.05□□□□□ -0.32
VPS13D-204ENST00000469054 RPS6KC1Q96S38 1066 aa13.05□□□□□ -0.32
VPS13D-204ENST00000469054 MSTO1Q9BUK6 570 aa13.05□□□□□ -0.32
VPS13D-204ENST00000469054 GBP3Q9H0R5 595 aa13.05□□□□□ -0.32
VPS13D-204ENST00000469054 AAASQ9NRG9 546 aa13.05□□□□□ -0.32
VPS13D-204ENST00000469054 RMND1Q9NWS8 449 aa13.05□□□□□ -0.32
VPS13D-204ENST00000469054 MIOSQ9NXC5 875 aa13.05□□□□□ -0.32
VPS13D-204ENST00000469054 HCSTQ9UBK5 93 aa13.05□□□□□ -0.32
VPS13D-204ENST00000469054 MTUS1Q9ULD2 1270 aa13.05□□□□□ -0.32
VPS13D-204ENST00000469054 TGFB1I1O43294 461 aa13.04□□□□□ -0.32
VPS13D-204ENST00000469054 FAM189A1O60320 539 aa13.04□□□□□ -0.32
VPS13D-204ENST00000469054 RB1P06400 928 aa13.04□□□□□ -0.32
VPS13D-204ENST00000469054 CLTAP09496 248 aa13.04□□□□□ -0.32
VPS13D-204ENST00000469054 LAG3P18627 525 aa13.04□□□□□ -0.32
VPS13D-204ENST00000469054 GARTP22102 1010 aa13.04□□□□□ -0.32
VPS13D-204ENST00000469054 SCNN1GP51170 649 aa13.04□□□□□ -0.32
VPS13D-204ENST00000469054 SNRPFP62306 86 aaKnown RBP13.04□□□□□ -0.32
VPS13D-204ENST00000469054 RNASELQ05823 741 aaKnown RBP13.04□□□□□ -0.32
VPS13D-204ENST00000469054 GRIN2CQ14957 1233 aa13.04□□□□□ -0.32
VPS13D-204ENST00000469054 KYAT1Q16773 422 aa13.04□□□□□ -0.32
VPS13D-204ENST00000469054 EPC2Q52LR7 807 aa13.04□□□□□ -0.32
VPS13D-204ENST00000469054 SEZ6Q53EL9 994 aa13.04□□□□□ -0.32
VPS13D-204ENST00000469054 Q7L0L9 218 aa13.04□□□□□ -0.32
VPS13D-204ENST00000469054 DEFB123Q8N688 67 aa13.04□□□□□ -0.32
VPS13D-204ENST00000469054 FAM193BQ96PV7 902 aaPredicted RBP13.04□□□□□ -0.32
VPS13D-204ENST00000469054 PLVAPQ9BX97 442 aa13.04□□□□□ -0.32
VPS13D-204ENST00000469054 NRDE2Q9H7Z3 1164 aa13.04□□□□□ -0.32
VPS13D-204ENST00000469054 TOPORSQ9NS56 1045 aaPredicted RBP13.04□□□□□ -0.32
VPS13D-204ENST00000469054 AGO2Q9UKV8 859 aaKnown RBP13.04□□□□□ -0.32
VPS13D-204ENST00000469054 COL4A6Q14031 1691 aa13.04□□□□□ -0.32
VPS13D-204ENST00000469054 PTPRSQ13332 1948 aa13.03□□□□□ -0.32
VPS13D-204ENST00000469054 C5orf67F2Z3F1 127 aa13.03□□□□□ -0.32
VPS13D-204ENST00000469054 KIAA0391O15091 583 aaKnown RBP13.03□□□□□ -0.32
VPS13D-204ENST00000469054 DDHD2O94830 711 aa13.03□□□□□ -0.32
VPS13D-204ENST00000469054 KIF20AO95235 890 aa13.03□□□□□ -0.32
VPS13D-204ENST00000469054 CTNNB1P35222 781 aa13.03□□□□□ -0.32
VPS13D-204ENST00000469054 GRIK3Q13003 919 aa13.03□□□□□ -0.32
VPS13D-204ENST00000469054 CAMK4Q16566 473 aa13.03□□□□□ -0.32
VPS13D-204ENST00000469054 SLC10A6Q3KNW5 377 aa13.03□□□□□ -0.32
VPS13D-204ENST00000469054 XKR4Q5GH76 650 aa13.03□□□□□ -0.32
VPS13D-204ENST00000469054 ZBTB41Q5SVQ8 909 aa13.03□□□□□ -0.32
VPS13D-204ENST00000469054 ARMCX5Q6P1M9 558 aa13.03□□□□□ -0.32
VPS13D-204ENST00000469054 KCNT2Q6UVM3 1135 aa13.03□□□□□ -0.32
VPS13D-204ENST00000469054 ALKAL1Q6UXT8 129 aa13.03□□□□□ -0.32
VPS13D-204ENST00000469054 HS2ST1Q7LGA3 356 aa13.03□□□□□ -0.32
VPS13D-204ENST00000469054 ZNF280BQ86YH2 543 aa13.03□□□□□ -0.32
VPS13D-204ENST00000469054 FBXO22Q8NEZ5 403 aa13.03□□□□□ -0.32
VPS13D-204ENST00000469054 CBWD1Q9BRT8 395 aa13.03□□□□□ -0.32
VPS13D-204ENST00000469054 CXCL16Q9H2A7 254 aa13.03□□□□□ -0.32
VPS13D-204ENST00000469054 RPF1Q9H9Y2 349 aaKnown RBP13.03□□□□□ -0.32
VPS13D-204ENST00000469054 PLEKHA5Q9HAU0 1116 aa13.03□□□□□ -0.32
VPS13D-204ENST00000469054 CGNQ9P2M7 1197 aaKnown RBP13.03□□□□□ -0.32
VPS13D-204ENST00000469054 CPSF3Q9UKF6 684 aaKnown RBP13.03□□□□□ -0.32
VPS13D-204ENST00000469054 PCDHB12Q9Y5F1 795 aa13.03□□□□□ -0.32
VPS13D-204ENST00000469054 SMIM28A0A1B0GU29 152 aa13.02□□□□□ -0.33
VPS13D-204ENST00000469054 CARNS1A5YM72 827 aa13.02□□□□□ -0.33
VPS13D-204ENST00000469054 EPOPA6NHQ4 379 aa13.02□□□□□ -0.33
VPS13D-204ENST00000469054 PTGESO14684 152 aa13.02□□□□□ -0.33
VPS13D-204ENST00000469054 MEFVO15553 781 aaPredicted RBP13.02□□□□□ -0.33
VPS13D-204ENST00000469054 ZC3H11AO75152 810 aaKnown RBP eCLIP13.02□□□□□ -0.33
VPS13D-204ENST00000469054 LDHAP00338 332 aaKnown RBP13.02□□□□□ -0.33
VPS13D-204ENST00000469054 ALDH2P05091 517 aa13.02□□□□□ -0.33
VPS13D-204ENST00000469054 THP07101 528 aa13.02□□□□□ -0.33
VPS13D-204ENST00000469054 GALTP07902 379 aa13.02□□□□□ -0.33
VPS13D-204ENST00000469054 CXCL8P10145 99 aa13.02□□□□□ -0.33
VPS13D-204ENST00000469054 TNFSF9P41273 254 aa13.02□□□□□ -0.33
VPS13D-204ENST00000469054 ALDH7A1P49419 539 aaKnown RBP13.02□□□□□ -0.33
VPS13D-204ENST00000469054 ACOT2P49753 483 aa13.02□□□□□ -0.33
VPS13D-204ENST00000469054 BCAR1P56945 870 aa13.02□□□□□ -0.33
VPS13D-204ENST00000469054 POU5F1Q01860 360 aaKnown RBP13.02□□□□□ -0.33
VPS13D-204ENST00000469054 DSC1Q08554 894 aa13.02□□□□□ -0.33
VPS13D-204ENST00000469054 ZNF658Q5TYW1 1059 aaPredicted RBP13.02□□□□□ -0.33
VPS13D-204ENST00000469054 COLGALT2Q8IYK4 626 aa13.02□□□□□ -0.33
VPS13D-204ENST00000469054 GUF1Q8N442 669 aaKnown RBP13.02□□□□□ -0.33
VPS13D-204ENST00000469054 COLGALT1Q8NBJ5 622 aa13.02□□□□□ -0.33
VPS13D-204ENST00000469054 GPT2Q8TD30 523 aa13.02□□□□□ -0.33
VPS13D-204ENST00000469054 SNX27Q96L92 541 aa13.02□□□□□ -0.33
VPS13D-204ENST00000469054 ZNF558Q96NG5 402 aa13.02□□□□□ -0.33
VPS13D-204ENST00000469054 C11orf84Q9BUA3 381 aaPredicted RBP13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms