RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 ARIH1Q9Y4X5 557 aaPredicted RBP22.86■■□□□ 1.25
SDC1-205ENST00000447124 TDRD15B5MCY1 1934 aaKnown RBP22.86■■□□□ 1.25
SDC1-205ENST00000447124 VWA3AA6NCI4 1184 aa22.85■■□□□ 1.25
SDC1-205ENST00000447124 CCDC169A6NNP5 214 aa22.85■■□□□ 1.25
SDC1-205ENST00000447124 TUSC3Q13454 348 aa22.85■■□□□ 1.25
SDC1-205ENST00000447124 ATF7IP2Q5U623 682 aa22.85■■□□□ 1.25
SDC1-205ENST00000447124 GPR149Q86SP6 731 aa22.85■■□□□ 1.25
SDC1-205ENST00000447124 RIPOR3Q96MK2 946 aa22.85■■□□□ 1.25
SDC1-205ENST00000447124 ADPGKQ9BRR6 497 aa22.85■■□□□ 1.25
SDC1-205ENST00000447124 TMEM134Q9H6X4 195 aa22.85■■□□□ 1.25
SDC1-205ENST00000447124 TSHZ2Q9NRE2 1034 aa22.85■■□□□ 1.25
SDC1-205ENST00000447124 ADAM28Q9UKQ2 775 aa22.85■■□□□ 1.25
SDC1-205ENST00000447124 SSX2IPQ9Y2D8 614 aa22.85■■□□□ 1.25
SDC1-205ENST00000447124 GDAQ9Y2T3 454 aa22.85■■□□□ 1.25
SDC1-205ENST00000447124 TMEM221A6NGB7 291 aa22.84■■□□□ 1.25
SDC1-205ENST00000447124 CASTOR2A6NHX0 329 aa22.84■■□□□ 1.25
SDC1-205ENST00000447124 M0R296 226 aa22.84■■□□□ 1.25
SDC1-205ENST00000447124 TADA2AO75478 443 aa22.84■■□□□ 1.25
SDC1-205ENST00000447124 MYBP10242 640 aa22.84■■□□□ 1.25
SDC1-205ENST00000447124 IGFBP6P24592 240 aaPredicted RBP22.84■■□□□ 1.25
SDC1-205ENST00000447124 PLA2G5P39877 138 aa22.84■■□□□ 1.25
SDC1-205ENST00000447124 ACO2Q99798 780 aaKnown RBP22.84■■□□□ 1.25
SDC1-205ENST00000447124 PTPRHQ9HD43 1115 aa22.84■■□□□ 1.25
SDC1-205ENST00000447124 ARHGAP28Q9P2N2 729 aa22.84■■□□□ 1.25
SDC1-205ENST00000447124 TNFSF13BQ9Y275 285 aa22.84■■□□□ 1.25
SDC1-205ENST00000447124 ZSCAN21Q9Y5A6 473 aaPredicted RBP22.84■■□□□ 1.25
SDC1-205ENST00000447124 MUC6Q6W4X9 2439 aa22.83■■□□□ 1.25
SDC1-205ENST00000447124 THP07101 528 aa22.83■■□□□ 1.25
SDC1-205ENST00000447124 CUL4AQ13619 759 aa22.83■■□□□ 1.25
SDC1-205ENST00000447124 HSP90AA2PQ14568 343 aaPredicted RBP22.83■■□□□ 1.25
SDC1-205ENST00000447124 PTPN21Q16825 1174 aa22.83■■□□□ 1.25
SDC1-205ENST00000447124 USP41Q3LFD5 358 aa22.83■■□□□ 1.25
SDC1-205ENST00000447124 DCAF4L1Q3SXM0 396 aa22.83■■□□□ 1.25
SDC1-205ENST00000447124 ARL6IP4Q66PJ3 421 aaKnown RBP22.83■■□□□ 1.25
SDC1-205ENST00000447124 BMP8AQ7Z5Y6 402 aa22.83■■□□□ 1.25
SDC1-205ENST00000447124 SYT2Q8N9I0 419 aaPredicted RBP22.83■■□□□ 1.25
SDC1-205ENST00000447124 SFXN1Q9H9B4 322 aa22.83■■□□□ 1.25
SDC1-205ENST00000447124 NR2E1Q9Y466 385 aa22.83■■□□□ 1.25
SDC1-205ENST00000447124 ADH1AP07327 375 aa22.82■■□□□ 1.24
SDC1-205ENST00000447124 SPATA31D3P0C874 917 aa22.82■■□□□ 1.24
SDC1-205ENST00000447124 RPL17P18621 184 aaKnown RBP22.82■■□□□ 1.24
SDC1-205ENST00000447124 GUCY2CP25092 1073 aa22.82■■□□□ 1.24
SDC1-205ENST00000447124 SPATA31D4Q6ZUB0 917 aa22.82■■□□□ 1.24
SDC1-205ENST00000447124 PALB2Q86YC2 1186 aa22.82■■□□□ 1.24
SDC1-205ENST00000447124 CEP120Q8N960 986 aa22.82■■□□□ 1.24
SDC1-205ENST00000447124 LRRC15Q8TF66 581 aa22.82■■□□□ 1.24
SDC1-205ENST00000447124 HASPINQ8TF76 798 aa22.82■■□□□ 1.24
SDC1-205ENST00000447124 RIN2Q8WYP3 895 aaPredicted RBP22.82■■□□□ 1.24
SDC1-205ENST00000447124 FAM122AQ96E09 287 aa22.82■■□□□ 1.24
SDC1-205ENST00000447124 NTPCRQ9BSD7 190 aaKnown RBP22.82■■□□□ 1.24
SDC1-205ENST00000447124 TARS2Q9BW92 718 aaKnown RBP22.82■■□□□ 1.24
SDC1-205ENST00000447124 KMT5AQ9NQR1 393 aa22.82■■□□□ 1.24
SDC1-205ENST00000447124 MAN1C1Q9NR34 630 aa22.82■■□□□ 1.24
SDC1-205ENST00000447124 ABLIM1O14639 778 aa22.81■■□□□ 1.24
SDC1-205ENST00000447124 SLC16A4O15374 487 aa22.81■■□□□ 1.24
SDC1-205ENST00000447124 KIF4AO95239 1232 aa22.81■■□□□ 1.24
SDC1-205ENST00000447124 SLC12A3P55017 1021 aa22.81■■□□□ 1.24
SDC1-205ENST00000447124 GRIN1Q05586 938 aa22.81■■□□□ 1.24
SDC1-205ENST00000447124 RAD51AP2Q09MP3 1159 aa22.81■■□□□ 1.24
SDC1-205ENST00000447124 DMP1Q13316 513 aaPredicted RBP22.81■■□□□ 1.24
SDC1-205ENST00000447124 TMEM119Q4V9L6 283 aa22.81■■□□□ 1.24
SDC1-205ENST00000447124 RTP2Q5QGT7 225 aa22.81■■□□□ 1.24
SDC1-205ENST00000447124 LILRA6Q6PI73 481 aa22.81■■□□□ 1.24
SDC1-205ENST00000447124 CD300LGQ6UXG3 332 aa22.81■■□□□ 1.24
SDC1-205ENST00000447124 GPR65Q8IYL9 337 aa22.81■■□□□ 1.24
SDC1-205ENST00000447124 ASIC4Q96FT7 647 aa22.81■■□□□ 1.24
SDC1-205ENST00000447124 DRC1Q96MC2 740 aa22.81■■□□□ 1.24
SDC1-205ENST00000447124 CDT1Q9H211 546 aa22.81■■□□□ 1.24
SDC1-205ENST00000447124 FNIP2Q9P278 1114 aa22.81■■□□□ 1.24
SDC1-205ENST00000447124 LIMD1Q9UGP4 676 aa22.81■■□□□ 1.24
SDC1-205ENST00000447124 ZNF318Q5VUA4 2279 aa22.81■■□□□ 1.24
SDC1-205ENST00000447124 NPHP3-ACAD11A0A0J9YXS1 232 aa22.8■■□□□ 1.24
SDC1-205ENST00000447124 GLUD1P00367 558 aa22.8■■□□□ 1.24
SDC1-205ENST00000447124 PLA2G4BP0C869 781 aa22.8■■□□□ 1.24
SDC1-205ENST00000447124 SIGLEC14Q08ET2 396 aa22.8■■□□□ 1.24
SDC1-205ENST00000447124 ARSHQ5FYA8 562 aa22.8■■□□□ 1.24
SDC1-205ENST00000447124 GLRA4Q5JXX5 417 aa22.8■■□□□ 1.24
SDC1-205ENST00000447124 PRSS55Q6UWB4 352 aaPredicted RBP22.8■■□□□ 1.24
SDC1-205ENST00000447124 ALKAL1Q6UXT8 129 aa22.8■■□□□ 1.24
SDC1-205ENST00000447124 GLYCTKQ8IVS8 523 aa22.8■■□□□ 1.24
SDC1-205ENST00000447124 KCTD17Q8N5Z5 321 aa22.8■■□□□ 1.24
SDC1-205ENST00000447124 CMASQ8NFW8 434 aaPredicted RBP22.8■■□□□ 1.24
SDC1-205ENST00000447124 PBXIP1Q96AQ6 731 aa22.8■■□□□ 1.24
SDC1-205ENST00000447124 ZBTB45Q96K62 511 aaPredicted RBP22.8■■□□□ 1.24
SDC1-205ENST00000447124 PPP1R10Q96QC0 940 aaKnown RBP22.8■■□□□ 1.24
SDC1-205ENST00000447124 C17orf75Q9HAS0 396 aa22.8■■□□□ 1.24
SDC1-205ENST00000447124 RBM19Q9Y4C8 960 aaKnown RBP22.8■■□□□ 1.24
SDC1-205ENST00000447124 ZDBF2Q9HCK1 2354 aa22.8■■□□□ 1.24
SDC1-205ENST00000447124 PHLPP2Q6ZVD8 1323 aa22.8■■□□□ 1.24
SDC1-205ENST00000447124 CCDC195A0A1B0GUA6 201 aa22.79■■□□□ 1.24
SDC1-205ENST00000447124 TGM5O43548 720 aa22.79■■□□□ 1.24
SDC1-205ENST00000447124 RFPL2O75678 378 aa22.79■■□□□ 1.24
SDC1-205ENST00000447124 PROZP22891 400 aa22.79■■□□□ 1.24
SDC1-205ENST00000447124 GRM5P41594 1212 aa22.79■■□□□ 1.24
SDC1-205ENST00000447124 XKR4Q5GH76 650 aa22.79■■□□□ 1.24
SDC1-205ENST00000447124 FAM171A1Q5VUB5 890 aa22.79■■□□□ 1.24
SDC1-205ENST00000447124 ZBTB33Q86T24 672 aa22.79■■□□□ 1.24
SDC1-205ENST00000447124 ZDHHC14Q8IZN3 488 aa22.79■■□□□ 1.24
SDC1-205ENST00000447124 KREMEN2Q8NCW0 462 aa22.79■■□□□ 1.24
SDC1-205ENST00000447124 LNX1Q8TBB1 728 aaPredicted RBP22.79■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms