RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 BRIP1Q9BX63 1249 aa2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 EIF2AQ9BY44 585 aaKnown RBP2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 CEP72Q9P209 647 aa2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 AFF4Q9UHB7 1163 aaKnown RBP2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 CHORDC1Q9UHD1 332 aaPredicted RBP2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 USP18Q9UMW8 372 aa2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 SNX8Q9Y5X2 465 aa2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 ATP23Q9Y6H3 246 aa2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 IKBKGQ9Y6K9 419 aa2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 RSF1Q96T23 1441 aaPredicted RBP2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 A0A088AWK7 358 aa2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 ISM1B1AKI9 464 aa2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 GPR25O00155 361 aa2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 MASP2O00187 686 aa2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 TMPRSS2O15393 492 aa2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 HTATSF1O43719 755 aaKnown RBP2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 TBC1D4O60343 1298 aa2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 PRAMEF1O95521 474 aa2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 ACADMP11310 421 aa2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 ATF7P17544 494 aaPredicted RBP2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 ALAS2P22557 587 aa2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 ATP5F1P24539 256 aaPredicted RBP2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 ATP5DP30049 168 aa2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 ASPAP45381 313 aa2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 MAN2A2P49641 1150 aa2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 PPARAQ07869 468 aa2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 MAMLD1Q13495 774 aa2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 COG2Q14746 738 aa2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 VWA3BQ502W6 1294 aa2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 KHDC1LQ5JSQ8 128 aa2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 C1orf141Q5JVX7 400 aa2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 NUTM2GQ5VZR2 741 aa2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 SPRYD7Q5W111 196 aa2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 HEATR3Q7Z4Q2 680 aa2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 R3HCC1LQ7Z5L2 792 aaKnown RBP2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 PHYKPLQ8IUZ5 450 aa2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 CCDC103Q8IW40 242 aa2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 SRBD1Q8N5C6 995 aaKnown RBP2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 C3orf20Q8ND61 904 aa2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 HIPK4Q8NE63 616 aa2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 OR8H1Q8NGG4 311 aa2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 KCNG4Q8TDN1 519 aa2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 SSH3Q8TE77 659 aa2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 HPS1Q92902 700 aa2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 ZC3H10Q96K80 434 aaKnown RBP2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 NOX5Q96PH1 765 aa2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 ORAI2Q96SN7 254 aa2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 ABCG4Q9H172 646 aa2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 SMURF1Q9HCE7 757 aa2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 KCNH7Q9NS40 1196 aa2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 FEM1BQ9UK73 627 aa2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 PCDHA6Q9UN73 950 aa2.59□□□□□ -1.99
CCDC88A-208ENST00000444458 F5H0A9 414 aaPredicted RBP2.59□□□□□ -2
CCDC88A-208ENST00000444458 F8W8V4 182 aa2.59□□□□□ -2
CCDC88A-208ENST00000444458 RNF225M0QZC1 329 aaPredicted RBP2.59□□□□□ -2
CCDC88A-208ENST00000444458 KRIT1O00522 736 aa2.59□□□□□ -2
CCDC88A-208ENST00000444458 C2CD2LO14523 706 aa2.59□□□□□ -2
CCDC88A-208ENST00000444458 SPTLC2O15270 562 aa2.59□□□□□ -2
CCDC88A-208ENST00000444458 SLC16A6O15403 523 aa2.59□□□□□ -2
CCDC88A-208ENST00000444458 SIGLEC6O43699 453 aa2.59□□□□□ -2
CCDC88A-208ENST00000444458 MAFO75444 373 aaPredicted RBP2.59□□□□□ -2
CCDC88A-208ENST00000444458 RARBP10826 455 aa2.59□□□□□ -2
CCDC88A-208ENST00000444458 STAT5AP42229 794 aa2.59□□□□□ -2
CCDC88A-208ENST00000444458 CTCFP49711 727 aaPredicted RBP2.59□□□□□ -2
CCDC88A-208ENST00000444458 AP1B1Q10567 949 aa2.59□□□□□ -2
CCDC88A-208ENST00000444458 FOXO1Q12778 655 aa2.59□□□□□ -2
CCDC88A-208ENST00000444458 MALLQ13021 153 aa2.59□□□□□ -2
CCDC88A-208ENST00000444458 RPS6KA2Q15349 733 aa2.59□□□□□ -2
CCDC88A-208ENST00000444458 C3orf38Q5JPI3 329 aa2.59□□□□□ -2
CCDC88A-208ENST00000444458 PITRM1Q5JRX3 1037 aa2.59□□□□□ -2
CCDC88A-208ENST00000444458 ATF7IPQ6VMQ6 1270 aa2.59□□□□□ -2
CCDC88A-208ENST00000444458 ZSCAN2Q7Z7L9 614 aaPredicted RBP2.59□□□□□ -2
CCDC88A-208ENST00000444458 RAB11FIP4Q86YS3 637 aa2.59□□□□□ -2
CCDC88A-208ENST00000444458 SMYD4Q8IYR2 804 aaPredicted RBP2.59□□□□□ -2
CCDC88A-208ENST00000444458 OR8H3Q8N146 312 aa2.59□□□□□ -2
CCDC88A-208ENST00000444458 MPP5Q8N3R9 675 aa2.59□□□□□ -2
CCDC88A-208ENST00000444458 SPC24Q8NBT2 197 aa2.59□□□□□ -2
CCDC88A-208ENST00000444458 IL31RAQ8NI17 732 aa2.59□□□□□ -2
CCDC88A-208ENST00000444458 FAM71BQ8TC56 605 aa2.59□□□□□ -2
CCDC88A-208ENST00000444458 ADAMTS15Q8TE58 950 aa2.59□□□□□ -2
CCDC88A-208ENST00000444458 FATE1Q969F0 183 aa2.59□□□□□ -2
CCDC88A-208ENST00000444458 ISL2Q96A47 359 aa2.59□□□□□ -2
CCDC88A-208ENST00000444458 NCAPGQ9BPX3 1015 aa2.59□□□□□ -2
CCDC88A-208ENST00000444458 MCMBPQ9BTE3 642 aa2.59□□□□□ -2
CCDC88A-208ENST00000444458 MAGEB5Q9BZ81 275 aa2.59□□□□□ -2
CCDC88A-208ENST00000444458 CD244Q9BZW8 370 aa2.59□□□□□ -2
CCDC88A-208ENST00000444458 BRD8Q9H0E9 1235 aa2.59□□□□□ -2
CCDC88A-208ENST00000444458 ACAD9Q9H845 621 aa2.59□□□□□ -2
CCDC88A-208ENST00000444458 TM7SF3Q9NS93 570 aa2.59□□□□□ -2
CCDC88A-208ENST00000444458 TDP1Q9NUW8 608 aa2.59□□□□□ -2
CCDC88A-208ENST00000444458 PNPOQ9NVS9 261 aa2.59□□□□□ -2
CCDC88A-208ENST00000444458 PIH1D1Q9NWS0 290 aaKnown RBP2.59□□□□□ -2
CCDC88A-208ENST00000444458 PRR13Q9NZ81 148 aa2.59□□□□□ -2
CCDC88A-208ENST00000444458 NAGPAQ9UK23 515 aa2.59□□□□□ -2
CCDC88A-208ENST00000444458 NPFFR2Q9Y5X5 522 aa2.59□□□□□ -2
CCDC88A-208ENST00000444458 A0A0B4J269 797 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 A0A1W2PPC4 97 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 UBA6A0AVT1 1052 aaPredicted RBP2.58□□□□□ -2
CCDC88A-208ENST00000444458 PTGES3LE9PB15 166 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 NPHS1O60500 1241 aa2.58□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms