RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 ALDH2P05091 517 aa12.54□□□□□ -0.4
COL28A1-203ENST00000435823 HARSP12081 509 aaKnown RBP12.54□□□□□ -0.4
COL28A1-203ENST00000435823 PROZP22891 400 aa12.54□□□□□ -0.4
COL28A1-203ENST00000435823 CMA1P23946 247 aa12.54□□□□□ -0.4
COL28A1-203ENST00000435823 DNAJB1P25685 340 aa12.54□□□□□ -0.4
COL28A1-203ENST00000435823 NMT1P30419 496 aaKnown RBP12.54□□□□□ -0.4
COL28A1-203ENST00000435823 GRM5P41594 1212 aa12.54□□□□□ -0.4
COL28A1-203ENST00000435823 SLC11A1P49279 550 aa12.54□□□□□ -0.4
COL28A1-203ENST00000435823 LIG4P49917 911 aa12.54□□□□□ -0.4
COL28A1-203ENST00000435823 BMS1Q14692 1282 aaKnown RBP12.54□□□□□ -0.4
COL28A1-203ENST00000435823 NOLC1Q14978 699 aaKnown RBP eCLIP12.54□□□□□ -0.4
COL28A1-203ENST00000435823 HERC4Q5GLZ8 1057 aaPredicted RBP12.54□□□□□ -0.4
COL28A1-203ENST00000435823 TCEAL5Q5H9L2 206 aa12.54□□□□□ -0.4
COL28A1-203ENST00000435823 CEP57L1Q8IYX8 460 aa12.54□□□□□ -0.4
COL28A1-203ENST00000435823 STAMQ92783 540 aa12.54□□□□□ -0.4
COL28A1-203ENST00000435823 HVCN1Q96D96 273 aa12.54□□□□□ -0.4
COL28A1-203ENST00000435823 CHAMP1Q96JM3 812 aa12.54□□□□□ -0.4
COL28A1-203ENST00000435823 ST6GALNAC4Q9H4F1 302 aa12.54□□□□□ -0.4
COL28A1-203ENST00000435823 MRPL44Q9H9J2 332 aaKnown RBP12.54□□□□□ -0.4
COL28A1-203ENST00000435823 PTPRHQ9HD43 1115 aa12.54□□□□□ -0.4
COL28A1-203ENST00000435823 ENTPD7Q9NQZ7 604 aa12.54□□□□□ -0.4
COL28A1-203ENST00000435823 PANK4Q9NVE7 773 aa12.54□□□□□ -0.4
COL28A1-203ENST00000435823 KBTBD4Q9NVX7 518 aa12.54□□□□□ -0.4
COL28A1-203ENST00000435823 DNAJB4Q9UDY4 337 aa12.54□□□□□ -0.4
COL28A1-203ENST00000435823 STK39Q9UEW8 545 aa12.54□□□□□ -0.4
COL28A1-203ENST00000435823 COG5Q9UP83 839 aa12.54□□□□□ -0.4
COL28A1-203ENST00000435823 FAN1Q9Y2M0 1017 aa12.54□□□□□ -0.4
COL28A1-203ENST00000435823 TDRD15B5MCY1 1934 aaKnown RBP12.54□□□□□ -0.4
COL28A1-203ENST00000435823 CLDN3O15551 220 aa12.53□□□□□ -0.4
COL28A1-203ENST00000435823 NCK2O43639 380 aa12.53□□□□□ -0.4
COL28A1-203ENST00000435823 THP07101 528 aa12.53□□□□□ -0.4
COL28A1-203ENST00000435823 OR1G1P47890 313 aa12.53□□□□□ -0.4
COL28A1-203ENST00000435823 OSTNP61366 133 aa12.53□□□□□ -0.4
COL28A1-203ENST00000435823 ASIC1P78348 528 aa12.53□□□□□ -0.4
COL28A1-203ENST00000435823 GTF2BQ00403 316 aa12.53□□□□□ -0.4
COL28A1-203ENST00000435823 CAMK1Q14012 370 aa12.53□□□□□ -0.4
COL28A1-203ENST00000435823 TMC7Q7Z402 723 aa12.53□□□□□ -0.4
COL28A1-203ENST00000435823 MAP4K3Q8IVH8 894 aa12.53□□□□□ -0.4
COL28A1-203ENST00000435823 COLGALT2Q8IYK4 626 aa12.53□□□□□ -0.4
COL28A1-203ENST00000435823 HLA-CQ95604 372 aa12.53□□□□□ -0.4
COL28A1-203ENST00000435823 IGSF21Q96ID5 467 aa12.53□□□□□ -0.4
COL28A1-203ENST00000435823 ACAP3Q96P50 834 aa12.53□□□□□ -0.4
COL28A1-203ENST00000435823 FIZ1Q96SL8 496 aa12.53□□□□□ -0.4
COL28A1-203ENST00000435823 TCF25Q9BQ70 676 aa12.53□□□□□ -0.4
COL28A1-203ENST00000435823 TRIM9Q9C026 710 aa12.53□□□□□ -0.4
COL28A1-203ENST00000435823 OLFML3Q9NRN5 406 aa12.53□□□□□ -0.4
COL28A1-203ENST00000435823 MIOSQ9NXC5 875 aa12.53□□□□□ -0.4
COL28A1-203ENST00000435823 PRG3Q9Y2Y8 225 aaPredicted RBP12.53□□□□□ -0.4
COL28A1-203ENST00000435823 TCHHQ07283 1943 aa12.52□□□□□ -0.4
COL28A1-203ENST00000435823 A0A1B0GVL5 298 aa12.52□□□□□ -0.41
COL28A1-203ENST00000435823 FRMD3A2A2Y4 597 aa12.52□□□□□ -0.41
COL28A1-203ENST00000435823 NRP1O14786 923 aa12.52□□□□□ -0.41
COL28A1-203ENST00000435823 GCNT3O95395 438 aa12.52□□□□□ -0.41
COL28A1-203ENST00000435823 PIGRP01833 764 aa12.52□□□□□ -0.41
COL28A1-203ENST00000435823 PFKFB1P16118 471 aa12.52□□□□□ -0.41
COL28A1-203ENST00000435823 IRS1P35568 1242 aa12.52□□□□□ -0.41
COL28A1-203ENST00000435823 ERVFC1P60507 584 aa12.52□□□□□ -0.41
COL28A1-203ENST00000435823 MCL1Q07820 350 aa12.52□□□□□ -0.41
COL28A1-203ENST00000435823 DSC1Q08554 894 aa12.52□□□□□ -0.41
COL28A1-203ENST00000435823 TUSC3Q13454 348 aa12.52□□□□□ -0.41
COL28A1-203ENST00000435823 ALCAMQ13740 583 aa12.52□□□□□ -0.41
COL28A1-203ENST00000435823 SMC1AQ14683 1233 aaKnown RBP12.52□□□□□ -0.41
COL28A1-203ENST00000435823 KYAT1Q16773 422 aa12.52□□□□□ -0.41
COL28A1-203ENST00000435823 AAK1Q2M2I8 961 aa12.52□□□□□ -0.41
COL28A1-203ENST00000435823 ZC2HC1CQ53FD0 456 aaPredicted RBP12.52□□□□□ -0.41
COL28A1-203ENST00000435823 STXBP4Q6ZWJ1 553 aa12.52□□□□□ -0.41
COL28A1-203ENST00000435823 ZNF720Q7Z2F6 126 aa12.52□□□□□ -0.41
COL28A1-203ENST00000435823 DDX53Q86TM3 631 aaKnown RBP12.52□□□□□ -0.41
COL28A1-203ENST00000435823 CEP120Q8N960 986 aa12.52□□□□□ -0.41
COL28A1-203ENST00000435823 GSTCDQ8NEC7 633 aa12.52□□□□□ -0.41
COL28A1-203ENST00000435823 ZBTB45Q96K62 511 aaPredicted RBP12.52□□□□□ -0.41
COL28A1-203ENST00000435823 C7orf25Q9BPX7 421 aa12.52□□□□□ -0.41
COL28A1-203ENST00000435823 COLEC11Q9BWP8 271 aa12.52□□□□□ -0.41
COL28A1-203ENST00000435823 NGRNQ9NPE2 291 aaKnown RBP12.52□□□□□ -0.41
COL28A1-203ENST00000435823 PRDM6Q9NQX0 595 aa12.52□□□□□ -0.41
COL28A1-203ENST00000435823 TBC1D7Q9P0N9 293 aa12.52□□□□□ -0.41
COL28A1-203ENST00000435823 USP25Q9UHP3 1055 aa12.52□□□□□ -0.41
COL28A1-203ENST00000435823 CIZ1Q9ULV3 898 aaPredicted RBP12.52□□□□□ -0.41
COL28A1-203ENST00000435823 EXOC7Q9UPT5 735 aa12.52□□□□□ -0.41
COL28A1-203ENST00000435823 PCDHB13Q9Y5F0 798 aa12.52□□□□□ -0.41
COL28A1-203ENST00000435823 CDH23Q9H251 3354 aa12.51□□□□□ -0.41
COL28A1-203ENST00000435823 ATG2AQ2TAZ0 1938 aa12.51□□□□□ -0.41
COL28A1-203ENST00000435823 A0A1W2PQ27 194 aa12.51□□□□□ -0.41
COL28A1-203ENST00000435823 A0A1W2PQ64 194 aa12.51□□□□□ -0.41
COL28A1-203ENST00000435823 A0A1W2PQD8 194 aa12.51□□□□□ -0.41
COL28A1-203ENST00000435823 FSD2A1L4K1 749 aa12.51□□□□□ -0.41
COL28A1-203ENST00000435823 ABLIM1O14639 778 aa12.51□□□□□ -0.41
COL28A1-203ENST00000435823 PTGESO14684 152 aa12.51□□□□□ -0.41
COL28A1-203ENST00000435823 FSCN2O14926 492 aa12.51□□□□□ -0.41
COL28A1-203ENST00000435823 B4GALT3O60512 393 aa12.51□□□□□ -0.41
COL28A1-203ENST00000435823 SLFN14P0C7P3 912 aa12.51□□□□□ -0.41
COL28A1-203ENST00000435823 CA8P35219 290 aa12.51□□□□□ -0.41
COL28A1-203ENST00000435823 AFMP43652 599 aa12.51□□□□□ -0.41
COL28A1-203ENST00000435823 COASYQ13057 564 aa12.51□□□□□ -0.41
COL28A1-203ENST00000435823 TPRNQ4KMQ1 711 aa12.51□□□□□ -0.41
COL28A1-203ENST00000435823 PLPP4Q5VZY2 271 aa12.51□□□□□ -0.41
COL28A1-203ENST00000435823 SLFN12LQ6IEE8 588 aa12.51□□□□□ -0.41
COL28A1-203ENST00000435823 EP400NLQ6ZTU2 488 aa12.51□□□□□ -0.41
COL28A1-203ENST00000435823 TMEM173Q86WV6 379 aaPredicted RBP12.51□□□□□ -0.41
COL28A1-203ENST00000435823 VPS52Q8N1B4 723 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 116.7 ms