RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 CTC1Q2NKJ3 1217 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 ABHD17CQ6PCB6 329 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 SERPINA13PQ6UXR4 307 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 TMC6Q7Z403 805 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 ADGRD2Q7Z7M1 963 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 FERMT3Q86UX7 667 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 AHI1Q8N157 1196 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 C12orf76Q8N812 135 aaPredicted RBP3□□□□□ -1.93
CCDC88A-205ENST00000426576 NUP37Q8NFH4 326 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 MYRIPQ8NFW9 859 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 UBXN4Q92575 508 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 CATSPER2Q96P56 530 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 C17orf80Q9BSJ5 609 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 MFRPQ9BY79 579 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 IMPG2Q9BZV3 1241 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 GAREM1Q9H706 876 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 KAT14Q9H8E8 782 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 C1orf112Q9NSG2 853 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 NRBP1Q9UHY1 535 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 UNC13AQ9UPW8 1703 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 ATP8B3O60423 1300 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 IL16Q14005 1332 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 CCDC195A0A1B0GUA6 201 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 SERTM1A2A2V5 107 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 LINC01553A4QN01 128 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 RRN3P2A6NIE6 340 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 SLC38A8A6NNN8 435 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 DPM1O60762 260 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 MAP4P27816 1152 aaKnown RBP3□□□□□ -1.93
CCDC88A-205ENST00000426576 ARID4AP29374 1257 aaPredicted RBP3□□□□□ -1.93
CCDC88A-205ENST00000426576 HNRNPH1P31943 449 aaKnown RBP3□□□□□ -1.93
CCDC88A-205ENST00000426576 MFAP1P55081 439 aaKnown RBP3□□□□□ -1.93
CCDC88A-205ENST00000426576 CDC42EP1Q00587 391 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 ZP2Q05996 745 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 FLYWCH1Q4VC44 716 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 E4F1Q66K89 784 aaPredicted RBP3□□□□□ -1.93
CCDC88A-205ENST00000426576 RNF207Q6ZRF8 634 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 MAMDC2Q7Z304 686 aaPredicted RBP3□□□□□ -1.93
CCDC88A-205ENST00000426576 IQCKQ8N0W5 287 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 ZADH2Q8N4Q0 377 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 SH2D3CQ8N5H7 860 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 MINDY1Q8N5J2 469 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 CCDC33Q8N5R6 958 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 CCDC89Q8N998 374 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 TRMT61AQ96FX7 289 aaKnown RBP3□□□□□ -1.93
CCDC88A-205ENST00000426576 IFT74Q96LB3 600 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 KXD1Q9BQD3 176 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 MLPHQ9BV36 600 aaPredicted RBP3□□□□□ -1.93
CCDC88A-205ENST00000426576 SPATC1LQ9H0A9 340 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 CD209Q9NNX6 404 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 CLEC1BQ9P126 229 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 VPS18Q9P253 973 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 SAE1Q9UBE0 346 aaPredicted RBP3□□□□□ -1.93
CCDC88A-205ENST00000426576 COPG2Q9UBF2 871 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 STRIP2Q9ULQ0 834 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 PIN4Q9Y237 131 aaKnown RBP3□□□□□ -1.93
CCDC88A-205ENST00000426576 NEUROG3Q9Y4Z2 214 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 FER1L4A9Z1Z3 1794 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 ATRQ13535 2644 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 SETD2Q9BYW2 2564 aaPredicted RBP3□□□□□ -1.93
CCDC88A-205ENST00000426576 MACROD2A1Z1Q3 448 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 CCT8L1PA6NM43 557 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 TMEM232C9JQI7 657 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 ERVH48-1M5A8F1 160 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 INPPL1O15357 1258 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 SPRY1O43609 319 aaPredicted RBP3□□□□□ -1.93
CCDC88A-205ENST00000426576 EIF5BO60841 1220 aaKnown RBP3□□□□□ -1.93
CCDC88A-205ENST00000426576 MCM4P33991 863 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 AFF3P51826 1226 aaKnown RBP3□□□□□ -1.93
CCDC88A-205ENST00000426576 PGDP52209 483 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 MTAPQ13126 283 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 CCDC38Q502W7 563 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 BMP8AQ7Z5Y6 402 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 FAM35AQ86V20 835 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 CTCFLQ8NI51 663 aaPredicted RBP3□□□□□ -1.93
CCDC88A-205ENST00000426576 CNDP2Q96KP4 475 aaKnown RBP3□□□□□ -1.93
CCDC88A-205ENST00000426576 MMTAG2Q9BU76 263 aaKnown RBP3□□□□□ -1.93
CCDC88A-205ENST00000426576 TRIM54Q9BYV2 358 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 TOPORSQ9NS56 1045 aaPredicted RBP3□□□□□ -1.93
CCDC88A-205ENST00000426576 GINM1Q9NU53 330 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 PAG1Q9NWQ8 432 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 MSRB2Q9Y3D2 182 aa3□□□□□ -1.93
CCDC88A-205ENST00000426576 NOTCH3Q9UM47 2321 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 TK2O00142 265 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 FFAR2O15552 330 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 RTN2O75298 545 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 TACC1O75410 805 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 PALMO75781 387 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 TGM6O95932 706 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 MYOGP15173 224 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 CSRP1P21291 193 aaKnown RBP2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 HTR1BP28222 390 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 CDC25AP30304 524 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 MCM5P33992 734 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 RRADP55042 308 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 CDH15P55291 814 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 BACE1P56817 501 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 KRT76Q01546 638 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 OCRLQ01968 901 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 GABPAQ06546 454 aa2.99□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms