RNA–Protein interactions for RNA: ENST00000422797.5

LIMS1-207, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 1,544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-207ENST00000422797 NOCTQ9UK39 431 aaKnown RBP11.8□□□□□ -0.52
LIMS1-207ENST00000422797 SUFUQ9UMX1 484 aa11.8□□□□□ -0.52
LIMS1-207ENST00000422797 EPB41L3Q9Y2J2 1087 aaPredicted RBP11.8□□□□□ -0.52
LIMS1-207ENST00000422797 C15orf41Q9Y2V0 281 aa11.8□□□□□ -0.52
LIMS1-207ENST00000422797 MRPL11Q9Y3B7 192 aaKnown RBP11.8□□□□□ -0.52
LIMS1-207ENST00000422797 ATRNL1Q5VV63 1379 aa11.79□□□□□ -0.52
LIMS1-207ENST00000422797 TMEM120BA0PK00 339 aa11.79□□□□□ -0.52
LIMS1-207ENST00000422797 K7ENM7 598 aa11.79□□□□□ -0.52
LIMS1-207ENST00000422797 BACH1O14867 736 aa11.79□□□□□ -0.52
LIMS1-207ENST00000422797 CDH16O75309 829 aa11.79□□□□□ -0.52
LIMS1-207ENST00000422797 LRRN2O75325 713 aa11.79□□□□□ -0.52
LIMS1-207ENST00000422797 RARAP10276 462 aa11.79□□□□□ -0.52
LIMS1-207ENST00000422797 PYGMP11217 842 aa11.79□□□□□ -0.52
LIMS1-207ENST00000422797 ATF2P15336 505 aa11.79□□□□□ -0.52
LIMS1-207ENST00000422797 FGFR4P22455 802 aa11.79□□□□□ -0.52
LIMS1-207ENST00000422797 CRKP46108 304 aa11.79□□□□□ -0.52
LIMS1-207ENST00000422797 KCNQ4P56696 695 aa11.79□□□□□ -0.52
LIMS1-207ENST00000422797 ATP11AP98196 1134 aa11.79□□□□□ -0.52
LIMS1-207ENST00000422797 CDR2Q01850 454 aa11.79□□□□□ -0.52
LIMS1-207ENST00000422797 RASA3Q14644 834 aa11.79□□□□□ -0.52
LIMS1-207ENST00000422797 SIX1Q15475 284 aaPredicted RBP11.79□□□□□ -0.52
LIMS1-207ENST00000422797 CEP55Q53EZ4 464 aa11.79□□□□□ -0.52
LIMS1-207ENST00000422797 SGO2Q562F6 1265 aa11.79□□□□□ -0.52
LIMS1-207ENST00000422797 SMYD5Q6GMV2 418 aa11.79□□□□□ -0.52
LIMS1-207ENST00000422797 ADAT2Q7Z6V5 191 aaKnown RBP11.79□□□□□ -0.52
LIMS1-207ENST00000422797 ZNF677Q86XU0 584 aa11.79□□□□□ -0.52
LIMS1-207ENST00000422797 APLFQ8IW19 511 aaPredicted RBP11.79□□□□□ -0.52
LIMS1-207ENST00000422797 ANKRD35Q8N283 1001 aa11.79□□□□□ -0.52
LIMS1-207ENST00000422797 CERS5Q8N5B7 392 aa11.79□□□□□ -0.52
LIMS1-207ENST00000422797 PIGOQ8TEQ8 1089 aa11.79□□□□□ -0.52
LIMS1-207ENST00000422797 SLC20A1Q8WUM9 679 aa11.79□□□□□ -0.52
LIMS1-207ENST00000422797 C7orf43Q8WVR3 580 aa11.79□□□□□ -0.52
LIMS1-207ENST00000422797 TCP11Q8WWU5 503 aa11.79□□□□□ -0.52
LIMS1-207ENST00000422797 SHC3Q92529 594 aa11.79□□□□□ -0.52
LIMS1-207ENST00000422797 ZNF653Q96CK0 615 aa11.79□□□□□ -0.52
LIMS1-207ENST00000422797 P2RX7Q99572 595 aaKnown RBP11.79□□□□□ -0.52
LIMS1-207ENST00000422797 NUP85Q9BW27 656 aa11.79□□□□□ -0.52
LIMS1-207ENST00000422797 CCDC113Q9H0I3 377 aa11.79□□□□□ -0.52
LIMS1-207ENST00000422797 DNAJC18Q9H819 358 aa11.79□□□□□ -0.52
LIMS1-207ENST00000422797 SENP1Q9P0U3 644 aa11.79□□□□□ -0.52
LIMS1-207ENST00000422797 KLHL14Q9P2G3 628 aa11.79□□□□□ -0.52
LIMS1-207ENST00000422797 RPL26L1Q9UNX3 145 aaKnown RBP11.79□□□□□ -0.52
LIMS1-207ENST00000422797 SMIM23A6NLE4 172 aa11.78□□□□□ -0.52
LIMS1-207ENST00000422797 TMEM110-MUSTN1A8MSY1 372 aa11.78□□□□□ -0.52
LIMS1-207ENST00000422797 RAD21O60216 631 aa11.78□□□□□ -0.52
LIMS1-207ENST00000422797 PLA2G6O60733 806 aa11.78□□□□□ -0.52
LIMS1-207ENST00000422797 HNRNPCL1O60812 293 aaKnown RBP11.78□□□□□ -0.52
LIMS1-207ENST00000422797 HIP1RO75146 1068 aa11.78□□□□□ -0.52
LIMS1-207ENST00000422797 ZC3H11AO75152 810 aaKnown RBP eCLIP11.78□□□□□ -0.52
LIMS1-207ENST00000422797 ENTPD3O75355 529 aa11.78□□□□□ -0.52
LIMS1-207ENST00000422797 UBOX5O94941 541 aa11.78□□□□□ -0.52
LIMS1-207ENST00000422797 LYPLA2O95372 231 aa11.78□□□□□ -0.52
LIMS1-207ENST00000422797 VIL1P09327 827 aaKnown RBP11.78□□□□□ -0.52
LIMS1-207ENST00000422797 CLTAP09496 248 aa11.78□□□□□ -0.52
LIMS1-207ENST00000422797 CCNB1P14635 433 aa11.78□□□□□ -0.52
LIMS1-207ENST00000422797 ABCD1P33897 745 aa11.78□□□□□ -0.52
LIMS1-207ENST00000422797 CETN2P41208 172 aa11.78□□□□□ -0.52
LIMS1-207ENST00000422797 CCNG1P51959 295 aa11.78□□□□□ -0.52
LIMS1-207ENST00000422797 IL9RQ01113 521 aa11.78□□□□□ -0.52
LIMS1-207ENST00000422797 KRT17Q04695 432 aa11.78□□□□□ -0.52
LIMS1-207ENST00000422797 USH1GQ495M9 461 aa11.78□□□□□ -0.52
LIMS1-207ENST00000422797 B3GNT9Q6UX72 402 aa11.78□□□□□ -0.52
LIMS1-207ENST00000422797 FAM196AQ6ZSG2 479 aa11.78□□□□□ -0.52
LIMS1-207ENST00000422797 PODNQ7Z5L7 613 aa11.78□□□□□ -0.52
LIMS1-207ENST00000422797 TBC1D1Q86TI0 1168 aaPredicted RBP11.78□□□□□ -0.52
LIMS1-207ENST00000422797 PNMA8AQ86V59 439 aaPredicted RBP11.78□□□□□ -0.52
LIMS1-207ENST00000422797 KLHL29Q96CT2 875 aa11.78□□□□□ -0.52
LIMS1-207ENST00000422797 L3MBTL3Q96JM7 780 aaPredicted RBP11.78□□□□□ -0.52
LIMS1-207ENST00000422797 WDR18Q9BV38 432 aa11.78□□□□□ -0.52
LIMS1-207ENST00000422797 DEFB129Q9H1M3 183 aa11.78□□□□□ -0.52
LIMS1-207ENST00000422797 ARHGEF10LQ9HCE6 1279 aa11.78□□□□□ -0.52
LIMS1-207ENST00000422797 ARHGEF3Q9NR81 526 aa11.78□□□□□ -0.52
LIMS1-207ENST00000422797 PRKAG3Q9UGI9 489 aa11.78□□□□□ -0.52
LIMS1-207ENST00000422797 ASIC3Q9UHC3 531 aa11.78□□□□□ -0.52
LIMS1-207ENST00000422797 COQ4Q9Y3A0 265 aa11.78□□□□□ -0.52
LIMS1-207ENST00000422797 SIPA1L1O43166 1804 aa11.78□□□□□ -0.52
LIMS1-207ENST00000422797 SFI1A8K8P3 1242 aa11.77□□□□□ -0.52
LIMS1-207ENST00000422797 TCP11X1B4DZS4 312 aa11.77□□□□□ -0.52
LIMS1-207ENST00000422797 G3V3G9 751 aa11.77□□□□□ -0.52
LIMS1-207ENST00000422797 OPLAHO14841 1288 aa11.77□□□□□ -0.52
LIMS1-207ENST00000422797 THAP12O43422 761 aa11.77□□□□□ -0.52
LIMS1-207ENST00000422797 P4HBP07237 508 aaKnown RBP11.77□□□□□ -0.52
LIMS1-207ENST00000422797 PLS3P13797 630 aa11.77□□□□□ -0.52
LIMS1-207ENST00000422797 GYS1P13807 737 aa11.77□□□□□ -0.52
LIMS1-207ENST00000422797 STX2P32856 288 aa11.77□□□□□ -0.52
LIMS1-207ENST00000422797 COPB2P35606 906 aa11.77□□□□□ -0.52
LIMS1-207ENST00000422797 IFNAR2P48551 515 aa11.77□□□□□ -0.52
LIMS1-207ENST00000422797 STAT2P52630 851 aa11.77□□□□□ -0.52
LIMS1-207ENST00000422797 COG2Q14746 738 aa11.77□□□□□ -0.52
LIMS1-207ENST00000422797 SETDB1Q15047 1291 aa11.77□□□□□ -0.52
LIMS1-207ENST00000422797 E2F5Q15329 346 aa11.77□□□□□ -0.52
LIMS1-207ENST00000422797 AOC3Q16853 763 aa11.77□□□□□ -0.52
LIMS1-207ENST00000422797 PARP6Q2NL67 630 aa11.77□□□□□ -0.52
LIMS1-207ENST00000422797 FAM133BQ5BKY9 247 aaKnown RBP11.77□□□□□ -0.52
LIMS1-207ENST00000422797 RBM26Q5T8P6 1007 aaKnown RBP11.77□□□□□ -0.52
LIMS1-207ENST00000422797 DCAF8Q5TAQ9 597 aa11.77□□□□□ -0.52
LIMS1-207ENST00000422797 ACAD10Q6JQN1 1059 aa11.77□□□□□ -0.52
LIMS1-207ENST00000422797 RGS9BPQ6ZS82 235 aa11.77□□□□□ -0.52
LIMS1-207ENST00000422797 SMIM5Q71RC9 77 aa11.77□□□□□ -0.52
LIMS1-207ENST00000422797 PALB2Q86YC2 1186 aa11.77□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms