RNA–Protein interactions for RNA: ENST00000421625.6

USP48-205, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2 BASIC

Gene USP48, Length 2,818 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-205ENST00000421625 CCNG1P51959 295 aa22.76■■□□□ 1.23
USP48-205ENST00000421625 TCEAL1Q15170 157 aa22.76■■□□□ 1.23
USP48-205ENST00000421625 MTFR1Q15390 333 aa22.76■■□□□ 1.23
USP48-205ENST00000421625 NSMFQ6X4W1 530 aa22.76■■□□□ 1.23
USP48-205ENST00000421625 ZNF720Q7Z2F6 126 aa22.76■■□□□ 1.23
USP48-205ENST00000421625 MAGEB18Q96M61 343 aa22.76■■□□□ 1.23
USP48-205ENST00000421625 NUP85Q9BW27 656 aa22.76■■□□□ 1.23
USP48-205ENST00000421625 MYLK2Q9H1R3 596 aa22.76■■□□□ 1.23
USP48-205ENST00000421625 LRRC19Q9H756 370 aa22.76■■□□□ 1.23
USP48-205ENST00000421625 WHRNQ9P202 907 aa22.76■■□□□ 1.23
USP48-205ENST00000421625 CHMP2AO43633 222 aa22.75■■□□□ 1.23
USP48-205ENST00000421625 TRIM68Q6AZZ1 485 aa22.75■■□□□ 1.23
USP48-205ENST00000421625 ZNF564Q8TBZ8 553 aaPredicted RBP22.75■■□□□ 1.23
USP48-205ENST00000421625 SAAL1Q96ER3 474 aa22.75■■□□□ 1.23
USP48-205ENST00000421625 TMEM237Q96Q45 408 aa22.75■■□□□ 1.23
USP48-205ENST00000421625 YIPF3Q9GZM5 350 aa22.75■■□□□ 1.23
USP48-205ENST00000421625 ZMYND8Q9ULU4 1186 aaPredicted RBP22.75■■□□□ 1.23
USP48-205ENST00000421625 EMSYQ7Z589 1322 aa22.75■■□□□ 1.23
USP48-205ENST00000421625 TAC1P20366 129 aa22.75■■□□□ 1.23
USP48-205ENST00000421625 SGO2Q562F6 1265 aa22.75■■□□□ 1.23
USP48-205ENST00000421625 FAM178BQ8IXR5 827 aa22.75■■□□□ 1.23
USP48-205ENST00000421625 NAF1Q96HR8 494 aaKnown RBP22.75■■□□□ 1.23
USP48-205ENST00000421625 CHST7Q9NS84 486 aa22.75■■□□□ 1.23
USP48-205ENST00000421625 TAF1LQ8IZX4 1826 aa22.74■■□□□ 1.23
USP48-205ENST00000421625 C10orf71Q711Q0 1435 aa22.74■■□□□ 1.23
USP48-205ENST00000421625 THAP12O43422 761 aa22.74■■□□□ 1.23
USP48-205ENST00000421625 LINGO3P0C6S8 592 aa22.74■■□□□ 1.23
USP48-205ENST00000421625 HOXA13P31271 388 aaPredicted RBP22.74■■□□□ 1.23
USP48-205ENST00000421625 ITGA8P53708 1063 aa22.74■■□□□ 1.23
USP48-205ENST00000421625 SLC15A2Q16348 729 aa22.74■■□□□ 1.23
USP48-205ENST00000421625 C7orf43Q8WVR3 580 aa22.74■■□□□ 1.23
USP48-205ENST00000421625 DYDC2Q96IM9 177 aa22.74■■□□□ 1.23
USP48-205ENST00000421625 KIF3CO14782 793 aa22.74■■□□□ 1.23
USP48-205ENST00000421625 SKIV2L2P42285 1042 aaKnown RBP22.74■■□□□ 1.23
USP48-205ENST00000421625 C11orf91Q3C1V1 193 aa22.74■■□□□ 1.23
USP48-205ENST00000421625 PRUNE1Q86TP1 453 aa22.74■■□□□ 1.23
USP48-205ENST00000421625 NOP9Q86U38 636 aaKnown RBP22.74■■□□□ 1.23
USP48-205ENST00000421625 OSBPL1AQ9BXW6 950 aa22.74■■□□□ 1.23
USP48-205ENST00000421625 NINJ2Q9NZG7 142 aa22.74■■□□□ 1.23
USP48-205ENST00000421625 IVDP26440 423 aa22.73■■□□□ 1.23
USP48-205ENST00000421625 SREBF1P36956 1147 aa22.73■■□□□ 1.23
USP48-205ENST00000421625 VPS41P49754 854 aa22.73■■□□□ 1.23
USP48-205ENST00000421625 RWDD2BP57060 319 aa22.73■■□□□ 1.23
USP48-205ENST00000421625 MKRN3Q13064 507 aaKnown RBP22.73■■□□□ 1.23
USP48-205ENST00000421625 CNBD1Q8NA66 436 aa22.73■■□□□ 1.23
USP48-205ENST00000421625 FBF1Q8TES7 1133 aa22.73■■□□□ 1.23
USP48-205ENST00000421625 PITPNM3Q9BZ71 974 aa22.73■■□□□ 1.23
USP48-205ENST00000421625 TISP43B9A030 160 aa22.73■■□□□ 1.23
USP48-205ENST00000421625 LIN7AO14910 233 aaPredicted RBP22.73■■□□□ 1.23
USP48-205ENST00000421625 WFS1O76024 890 aa22.73■■□□□ 1.23
USP48-205ENST00000421625 GNAZP19086 355 aa22.73■■□□□ 1.23
USP48-205ENST00000421625 RAB3IPQ96QF0 476 aaPredicted RBP22.73■■□□□ 1.23
USP48-205ENST00000421625 PAIP2Q9BPZ3 127 aaKnown RBP22.73■■□□□ 1.23
USP48-205ENST00000421625 PCIF1Q9H4Z3 704 aa22.73■■□□□ 1.23
USP48-205ENST00000421625 NKIRAS1Q9NYS0 192 aa22.73■■□□□ 1.23
USP48-205ENST00000421625 NAALADL1Q9UQQ1 740 aa22.73■■□□□ 1.23
USP48-205ENST00000421625 A6NHS1 94 aa22.72■■□□□ 1.23
USP48-205ENST00000421625 HIP1RO75146 1068 aa22.72■■□□□ 1.23
USP48-205ENST00000421625 MTA2O94776 668 aa22.72■■□□□ 1.23
USP48-205ENST00000421625 SLITRK3O94933 977 aa22.72■■□□□ 1.23
USP48-205ENST00000421625 TARSP26639 723 aaKnown RBP22.72■■□□□ 1.23
USP48-205ENST00000421625 PPP3CAQ08209 521 aa22.72■■□□□ 1.23
USP48-205ENST00000421625 ARHGEF18Q6ZSZ5 1173 aa22.72■■□□□ 1.23
USP48-205ENST00000421625 ERP27Q96DN0 273 aa22.72■■□□□ 1.23
USP48-205ENST00000421625 SNF8Q96H20 258 aa22.72■■□□□ 1.23
USP48-205ENST00000421625 HSD17B14Q9BPX1 270 aa22.72■■□□□ 1.23
USP48-205ENST00000421625 MOV10L1Q9BXT6 1211 aaKnown RBP22.72■■□□□ 1.23
USP48-205ENST00000421625 ZNF831Q5JPB2 1677 aa22.72■■□□□ 1.23
USP48-205ENST00000421625 ODR4Q5SWX8 454 aa22.72■■□□□ 1.23
USP48-205ENST00000421625 INTS8Q75QN2 995 aaKnown RBP22.72■■□□□ 1.23
USP48-205ENST00000421625 KIAA0825Q8IV33 1275 aa22.72■■□□□ 1.23
USP48-205ENST00000421625 EPS8L1Q8TE68 723 aa22.72■■□□□ 1.23
USP48-205ENST00000421625 PSPC1Q8WXF1 523 aaKnown RBP22.72■■□□□ 1.23
USP48-205ENST00000421625 RGL2O15211 777 aa22.72■■□□□ 1.23
USP48-205ENST00000421625 GM2AP17900 193 aa22.72■■□□□ 1.23
USP48-205ENST00000421625 ITIH2P19823 946 aa22.72■■□□□ 1.23
USP48-205ENST00000421625 ZNF76P36508 570 aa22.72■■□□□ 1.23
USP48-205ENST00000421625 GCLMP48507 274 aa22.72■■□□□ 1.23
USP48-205ENST00000421625 CCDC15Q0P6D6 951 aa22.72■■□□□ 1.23
USP48-205ENST00000421625 ACVR2BQ13705 512 aa22.72■■□□□ 1.23
USP48-205ENST00000421625 TMEM63BQ5T3F8 832 aa22.72■■□□□ 1.23
USP48-205ENST00000421625 KRT27Q7Z3Y8 459 aa22.72■■□□□ 1.23
USP48-205ENST00000421625 MORC4Q8TE76 937 aa22.72■■□□□ 1.23
USP48-205ENST00000421625 SPOCK2Q92563 424 aa22.72■■□□□ 1.23
USP48-205ENST00000421625 ZNF653Q96CK0 615 aa22.72■■□□□ 1.23
USP48-205ENST00000421625 ZFATQ9P243 1243 aa22.72■■□□□ 1.23
USP48-205ENST00000421625 HAO1Q9UJM8 370 aa22.72■■□□□ 1.23
USP48-205ENST00000421625 GGA1Q9UJY5 639 aa22.72■■□□□ 1.23
USP48-205ENST00000421625 NOCTQ9UK39 431 aaKnown RBP22.72■■□□□ 1.23
USP48-205ENST00000421625 ADGRA3Q8IWK6 1321 aa22.71■■□□□ 1.23
USP48-205ENST00000421625 FAM196BA6NMK8 535 aa22.71■■□□□ 1.23
USP48-205ENST00000421625 PEX11AO75192 247 aa22.71■■□□□ 1.23
USP48-205ENST00000421625 LUC7L3O95232 432 aaKnown RBP22.71■■□□□ 1.23
USP48-205ENST00000421625 RFX1P22670 979 aa22.71■■□□□ 1.23
USP48-205ENST00000421625 WDR4P57081 412 aaKnown RBP22.71■■□□□ 1.23
USP48-205ENST00000421625 STRN3Q13033 797 aa22.71■■□□□ 1.23
USP48-205ENST00000421625 VSIG1Q86XK7 387 aa22.71■■□□□ 1.23
USP48-205ENST00000421625 SYCP3Q8IZU3 236 aa22.71■■□□□ 1.23
USP48-205ENST00000421625 HERPUD2Q9BSE4 406 aa22.71■■□□□ 1.23
USP48-205ENST00000421625 RNPEPL1Q9HAU8 725 aa22.71■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms