RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 STAMQ92783 540 aa8.99□□□□□ -0.97
VIM-202ENST00000421459 FGF14Q92915 247 aa8.99□□□□□ -0.97
VIM-202ENST00000421459 CLSTN3Q9BQT9 956 aa8.99□□□□□ -0.97
VIM-202ENST00000421459 PRKD2Q9BZL6 878 aa8.99□□□□□ -0.97
VIM-202ENST00000421459 TMEM60Q9H2L4 133 aa8.99□□□□□ -0.97
VIM-202ENST00000421459 TTC12Q9H892 705 aaPredicted RBP8.99□□□□□ -0.97
VIM-202ENST00000421459 ANKEF1Q9NU02 776 aa8.99□□□□□ -0.97
VIM-202ENST00000421459 SNTG2Q9NY99 539 aa8.99□□□□□ -0.97
VIM-202ENST00000421459 DLGAP2Q9P1A6 1054 aa8.99□□□□□ -0.97
VIM-202ENST00000421459 STK39Q9UEW8 545 aa8.99□□□□□ -0.97
VIM-202ENST00000421459 SSX2IPQ9Y2D8 614 aa8.99□□□□□ -0.97
VIM-202ENST00000421459 MTF2Q9Y483 593 aaPredicted RBP8.99□□□□□ -0.97
VIM-202ENST00000421459 DENND4AQ7Z401 1863 aa8.99□□□□□ -0.97
VIM-202ENST00000421459 STK36Q9NRP7 1315 aa8.99□□□□□ -0.97
VIM-202ENST00000421459 A0A1B0GUA9 196 aa8.98□□□□□ -0.97
VIM-202ENST00000421459 LRRIQ4A6NIV6 560 aa8.98□□□□□ -0.97
VIM-202ENST00000421459 ANHXE9PGG2 379 aa8.98□□□□□ -0.97
VIM-202ENST00000421459 PTGESO14684 152 aa8.98□□□□□ -0.97
VIM-202ENST00000421459 MED24O75448 989 aa8.98□□□□□ -0.97
VIM-202ENST00000421459 NR1I2O75469 434 aa8.98□□□□□ -0.97
VIM-202ENST00000421459 ZMYND10O75800 440 aa8.98□□□□□ -0.97
VIM-202ENST00000421459 DGAT1O75907 488 aa8.98□□□□□ -0.97
VIM-202ENST00000421459 CDKL5O76039 1030 aa8.98□□□□□ -0.97
VIM-202ENST00000421459 LYPLA2O95372 231 aa8.98□□□□□ -0.97
VIM-202ENST00000421459 SPATA31C1P0DKV0 1188 aa8.98□□□□□ -0.97
VIM-202ENST00000421459 CD72P21854 359 aa8.98□□□□□ -0.97
VIM-202ENST00000421459 FSHRP23945 695 aa8.98□□□□□ -0.97
VIM-202ENST00000421459 POU5F1BQ06416 359 aa8.98□□□□□ -0.97
VIM-202ENST00000421459 NCBP1Q09161 790 aaKnown RBP8.98□□□□□ -0.97
VIM-202ENST00000421459 GRIK3Q13003 919 aa8.98□□□□□ -0.97
VIM-202ENST00000421459 SNW1Q13573 536 aaKnown RBP8.98□□□□□ -0.97
VIM-202ENST00000421459 HSP90AA2PQ14568 343 aaPredicted RBP8.98□□□□□ -0.97
VIM-202ENST00000421459 NAB2Q15742 525 aa8.98□□□□□ -0.97
VIM-202ENST00000421459 ME3Q16798 604 aa8.98□□□□□ -0.97
VIM-202ENST00000421459 FAM171A1Q5VUB5 890 aa8.98□□□□□ -0.97
VIM-202ENST00000421459 EEF1DP3Q658K8 133 aa8.98□□□□□ -0.97
VIM-202ENST00000421459 DCLRE1AQ6PJP8 1040 aa8.98□□□□□ -0.97
VIM-202ENST00000421459 NOSTRINQ8IVI9 506 aa8.98□□□□□ -0.97
VIM-202ENST00000421459 SLFN12Q8IYM2 578 aa8.98□□□□□ -0.97
VIM-202ENST00000421459 KIAA2013Q8IYS2 634 aa8.98□□□□□ -0.97
VIM-202ENST00000421459 MAML2Q8IZL2 1156 aaPredicted RBP8.98□□□□□ -0.97
VIM-202ENST00000421459 ITFG1Q8TB96 612 aa8.98□□□□□ -0.97
VIM-202ENST00000421459 LNX1Q8TBB1 728 aaPredicted RBP8.98□□□□□ -0.97
VIM-202ENST00000421459 RMDN1Q96DB5 314 aa8.98□□□□□ -0.97
VIM-202ENST00000421459 CCDC51Q96ER9 411 aa8.98□□□□□ -0.97
VIM-202ENST00000421459 MTMR9Q96QG7 549 aa8.98□□□□□ -0.97
VIM-202ENST00000421459 PLEKHA4Q9H4M7 779 aa8.98□□□□□ -0.97
VIM-202ENST00000421459 PDZD7Q9H5P4 517 aa8.98□□□□□ -0.97
VIM-202ENST00000421459 ARHGEF3Q9NR81 526 aa8.98□□□□□ -0.97
VIM-202ENST00000421459 HCFC1R1Q9NWW0 138 aa8.98□□□□□ -0.97
VIM-202ENST00000421459 FNIP2Q9P278 1114 aa8.98□□□□□ -0.97
VIM-202ENST00000421459 POLIQ9UNA4 740 aa8.98□□□□□ -0.97
VIM-202ENST00000421459 SIT1Q9Y3P8 196 aa8.98□□□□□ -0.97
VIM-202ENST00000421459 C2orf16Q68DN1 1984 aa8.98□□□□□ -0.97
VIM-202ENST00000421459 I3L4J1 428 aa8.97□□□□□ -0.97
VIM-202ENST00000421459 PAPLNO95428 1278 aa8.97□□□□□ -0.97
VIM-202ENST00000421459 CENPBP07199 599 aaPredicted RBP8.97□□□□□ -0.97
VIM-202ENST00000421459 SP9P0CG40 484 aa8.97□□□□□ -0.97
VIM-202ENST00000421459 XBP1P17861 261 aa8.97□□□□□ -0.97
VIM-202ENST00000421459 MCM7P33993 719 aa8.97□□□□□ -0.97
VIM-202ENST00000421459 GUCY1B3Q02153 619 aa8.97□□□□□ -0.97
VIM-202ENST00000421459 TUSC3Q13454 348 aa8.97□□□□□ -0.97
VIM-202ENST00000421459 PSMD5Q16401 504 aa8.97□□□□□ -0.97
VIM-202ENST00000421459 RSPO2Q6UXX9 243 aaPredicted RBP8.97□□□□□ -0.97
VIM-202ENST00000421459 CYP26C1Q6V0L0 522 aa8.97□□□□□ -0.97
VIM-202ENST00000421459 CATSPER3Q86XQ3 398 aa8.97□□□□□ -0.97
VIM-202ENST00000421459 FAM177A1Q8N128 213 aaPredicted RBP8.97□□□□□ -0.97
VIM-202ENST00000421459 HDAC7Q8WUI4 952 aa8.97□□□□□ -0.97
VIM-202ENST00000421459 CCDC43Q96MW1 224 aaKnown RBP8.97□□□□□ -0.97
VIM-202ENST00000421459 NAP1L4Q99733 375 aaKnown RBP8.97□□□□□ -0.97
VIM-202ENST00000421459 TTPALQ9BTX7 342 aa8.97□□□□□ -0.97
VIM-202ENST00000421459 KIFC3Q9BVG8 833 aa8.97□□□□□ -0.97
VIM-202ENST00000421459 NFKBIZQ9BYH8 718 aa8.97□□□□□ -0.97
VIM-202ENST00000421459 RHOBTB2Q9BYZ6 727 aa8.97□□□□□ -0.97
VIM-202ENST00000421459 FZD8Q9H461 694 aa8.97□□□□□ -0.97
VIM-202ENST00000421459 ZDHHC7Q9NXF8 308 aa8.97□□□□□ -0.97
VIM-202ENST00000421459 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP8.97□□□□□ -0.97
VIM-202ENST00000421459 DPP7Q9UHL4 492 aa8.97□□□□□ -0.97
VIM-202ENST00000421459 GDAQ9Y2T3 454 aa8.97□□□□□ -0.97
VIM-202ENST00000421459 CACNA1HO95180 2353 aa8.97□□□□□ -0.97
VIM-202ENST00000421459 NRG2O14511 850 aaPredicted RBP8.96□□□□□ -0.98
VIM-202ENST00000421459 NEMFO60524 1076 aa8.96□□□□□ -0.98
VIM-202ENST00000421459 RECQL4O94761 1208 aa8.96□□□□□ -0.98
VIM-202ENST00000421459 LMNAP02545 664 aaKnown RBP8.96□□□□□ -0.98
VIM-202ENST00000421459 C8AP07357 584 aa8.96□□□□□ -0.98
VIM-202ENST00000421459 OR1D2P34982 312 aa8.96□□□□□ -0.98
VIM-202ENST00000421459 ST3GAL1Q11201 340 aa8.96□□□□□ -0.98
VIM-202ENST00000421459 PCBP1Q15365 356 aaKnown RBP eCLIP8.96□□□□□ -0.983e-21■■□□□ 13.3
VIM-202ENST00000421459 ECM1Q16610 540 aa8.96□□□□□ -0.98
VIM-202ENST00000421459 TMEM132AQ24JP5 1023 aa8.96□□□□□ -0.98
VIM-202ENST00000421459 GLRA4Q5JXX5 417 aa8.96□□□□□ -0.98
VIM-202ENST00000421459 PPM1LQ5SGD2 360 aa8.96□□□□□ -0.98
VIM-202ENST00000421459 ELMSAN1Q6PJG2 1045 aa8.96□□□□□ -0.98
VIM-202ENST00000421459 CD300LGQ6UXG3 332 aa8.96□□□□□ -0.98
VIM-202ENST00000421459 C1orf210Q8IVY1 113 aa8.96□□□□□ -0.98
VIM-202ENST00000421459 DIS3L2Q8IYB7 885 aaKnown RBP8.96□□□□□ -0.98
VIM-202ENST00000421459 HACE1Q8IYU2 909 aa8.96□□□□□ -0.98
VIM-202ENST00000421459 TMEM130Q8N3G9 435 aa8.96□□□□□ -0.98
VIM-202ENST00000421459 NSUN7Q8NE18 718 aaKnown RBP8.96□□□□□ -0.98
VIM-202ENST00000421459 SLC7A14Q8TBB6 771 aa8.96□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms