RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 TBC1D25Q3MII6 688 aa11.95□□□□□ -0.5
CUX1-204ENST00000393824 CCDC38Q502W7 563 aa11.95□□□□□ -0.5
CUX1-204ENST00000393824 PRR16Q569H4 304 aa11.95□□□□□ -0.5
CUX1-204ENST00000393824 CMPK2Q5EBM0 449 aa11.95□□□□□ -0.5
CUX1-204ENST00000393824 CROCCP2Q86T23 111 aa11.95□□□□□ -0.5
CUX1-204ENST00000393824 NCAPG2Q86XI2 1143 aa11.95□□□□□ -0.5
CUX1-204ENST00000393824 GPIHBP1Q8IV16 184 aa11.95□□□□□ -0.5
CUX1-204ENST00000393824 METTL13Q8N6R0 699 aa11.95□□□□□ -0.5
CUX1-204ENST00000393824 ZFAND2BQ8WV99 257 aa11.95□□□□□ -0.5
CUX1-204ENST00000393824 KLHL29Q96CT2 875 aa11.95□□□□□ -0.5
CUX1-204ENST00000393824 IFT74Q96LB3 600 aa11.95□□□□□ -0.5
CUX1-204ENST00000393824 CEP63Q96MT8 703 aa11.95□□□□□ -0.5
CUX1-204ENST00000393824 FMO2Q99518 471 aa11.95□□□□□ -0.5
CUX1-204ENST00000393824 AP1M1Q9BXS5 423 aa11.95□□□□□ -0.5
CUX1-204ENST00000393824 EPB41L4BQ9H329 900 aa11.95□□□□□ -0.5
CUX1-204ENST00000393824 NLRC4Q9NPP4 1024 aa11.95□□□□□ -0.5
CUX1-204ENST00000393824 PAPOLBQ9NRJ5 636 aaKnown RBP11.95□□□□□ -0.5
CUX1-204ENST00000393824 AIPL1Q9NZN9 384 aa11.95□□□□□ -0.5
CUX1-204ENST00000393824 ADAM22Q9P0K1 906 aa11.95□□□□□ -0.5
CUX1-204ENST00000393824 WDR3Q9UNX4 943 aaKnown RBP eCLIP11.95□□□□□ -0.5
CUX1-204ENST00000393824 UTP11Q9Y3A2 253 aaKnown RBP11.95□□□□□ -0.5
CUX1-204ENST00000393824 NOC2LQ9Y3T9 749 aaKnown RBP11.95□□□□□ -0.5
CUX1-204ENST00000393824 MKI67P46013 3256 aaKnown RBP11.95□□□□□ -0.5
CUX1-204ENST00000393824 PGK2P07205 417 aa11.95□□□□□ -0.5
CUX1-204ENST00000393824 SLC10A3P09131 477 aa11.95□□□□□ -0.5
CUX1-204ENST00000393824 ITGB5P18084 799 aa11.95□□□□□ -0.5
CUX1-204ENST00000393824 MARSP56192 900 aaKnown RBP11.95□□□□□ -0.5
CUX1-204ENST00000393824 MRPS9P82933 396 aaKnown RBP11.95□□□□□ -0.5
CUX1-204ENST00000393824 PDIA5Q14554 519 aa11.95□□□□□ -0.5
CUX1-204ENST00000393824 C1QTNF12Q5T7M4 302 aa11.95□□□□□ -0.5
CUX1-204ENST00000393824 RPUSD2Q8IZ73 545 aaKnown RBP11.95□□□□□ -0.5
CUX1-204ENST00000393824 PRCCQ92733 491 aaPredicted RBP11.95□□□□□ -0.5
CUX1-204ENST00000393824 PACSIN1Q9BY11 444 aa11.95□□□□□ -0.5
CUX1-204ENST00000393824 PABPC3Q9H361 631 aaKnown RBP11.95□□□□□ -0.5
CUX1-204ENST00000393824 ADAMTS1Q9UHI8 967 aa11.95□□□□□ -0.5
CUX1-204ENST00000393824 DDX25Q9UHL0 483 aaKnown RBP11.95□□□□□ -0.5
CUX1-204ENST00000393824 POTEMA6NI47 508 aa11.94□□□□□ -0.5
CUX1-204ENST00000393824 TMEM88BA6NKF7 163 aa11.94□□□□□ -0.5
CUX1-204ENST00000393824 TTI1O43156 1089 aa11.94□□□□□ -0.5
CUX1-204ENST00000393824 EVI5O60447 810 aa11.94□□□□□ -0.5
CUX1-204ENST00000393824 AGTP01019 485 aa11.94□□□□□ -0.5
CUX1-204ENST00000393824 VIMP08670 466 aaKnown RBP11.94□□□□□ -0.5
CUX1-204ENST00000393824 TECP42680 631 aa11.94□□□□□ -0.5
CUX1-204ENST00000393824 TXKP42681 527 aa11.94□□□□□ -0.5
CUX1-204ENST00000393824 GCLCP48506 637 aaPredicted RBP11.94□□□□□ -0.5
CUX1-204ENST00000393824 ATP11AP98196 1134 aa11.94□□□□□ -0.5
CUX1-204ENST00000393824 FKBP3Q00688 224 aaKnown RBP11.94□□□□□ -0.5
CUX1-204ENST00000393824 TRIM74Q86UV6 250 aa11.94□□□□□ -0.5
CUX1-204ENST00000393824 TRIM73Q86UV7 250 aa11.94□□□□□ -0.5
CUX1-204ENST00000393824 RIOX2Q8IUF8 465 aa11.94□□□□□ -0.5
CUX1-204ENST00000393824 TSC22D3Q99576 134 aa11.94□□□□□ -0.5
CUX1-204ENST00000393824 PRMT1Q99873 361 aaKnown RBP11.94□□□□□ -0.5
CUX1-204ENST00000393824 OSBPL1AQ9BXW6 950 aa11.94□□□□□ -0.5
CUX1-204ENST00000393824 RAB34Q9BZG1 259 aa11.94□□□□□ -0.5
CUX1-204ENST00000393824 BLOC1S4Q9NUP1 217 aa11.94□□□□□ -0.5
CUX1-204ENST00000393824 ATP8A1Q9Y2Q0 1164 aa11.94□□□□□ -0.5
CUX1-204ENST00000393824 USP15Q9Y4E8 981 aaPredicted RBP11.94□□□□□ -0.5
CUX1-204ENST00000393824 RPTORQ8N122 1335 aa11.94□□□□□ -0.5
CUX1-204ENST00000393824 LCTP09848 1927 aa11.94□□□□□ -0.5
CUX1-204ENST00000393824 MYMKA6NI61 221 aa11.94□□□□□ -0.5
CUX1-204ENST00000393824 O00370 1275 aa11.94□□□□□ -0.5
CUX1-204ENST00000393824 NPTXRO95502 500 aa11.94□□□□□ -0.5
CUX1-204ENST00000393824 FDX1P10109 184 aa11.94□□□□□ -0.5
CUX1-204ENST00000393824 ANXA13P27216 316 aa11.94□□□□□ -0.5
CUX1-204ENST00000393824 CTCFP49711 727 aaPredicted RBP11.94□□□□□ -0.5
CUX1-204ENST00000393824 LACTBP83111 547 aaPredicted RBP11.94□□□□□ -0.5
CUX1-204ENST00000393824 GRB10Q13322 594 aa11.94□□□□□ -0.5
CUX1-204ENST00000393824 SNX1Q13596 522 aa11.94□□□□□ -0.5
CUX1-204ENST00000393824 TAF11Q15544 211 aa11.94□□□□□ -0.5
CUX1-204ENST00000393824 TNFAIP8L3Q5GJ75 292 aa11.94□□□□□ -0.5
CUX1-204ENST00000393824 C6orf118Q5T5N4 469 aa11.94□□□□□ -0.5
CUX1-204ENST00000393824 SLFN11Q7Z7L1 901 aa11.94□□□□□ -0.5
CUX1-204ENST00000393824 GALNT15Q8N3T1 639 aa11.94□□□□□ -0.5
CUX1-204ENST00000393824 ATP8B4Q8TF62 1192 aa11.94□□□□□ -0.5
CUX1-204ENST00000393824 LARP4BQ92615 738 aaKnown RBP11.94□□□□□ -0.5
CUX1-204ENST00000393824 RMDN3Q96TC7 470 aa11.94□□□□□ -0.5
CUX1-204ENST00000393824 SELENOSQ9BQE4 189 aa11.94□□□□□ -0.5
CUX1-204ENST00000393824 NUDT12Q9BQG2 462 aa11.94□□□□□ -0.5
CUX1-204ENST00000393824 TMEM109Q9BVC6 243 aa11.94□□□□□ -0.5
CUX1-204ENST00000393824 GLT8D2Q9H1C3 349 aa11.94□□□□□ -0.5
CUX1-204ENST00000393824 ACAD9Q9H845 621 aa11.94□□□□□ -0.5
CUX1-204ENST00000393824 TTC7AQ9ULT0 858 aaPredicted RBP11.94□□□□□ -0.5
CUX1-204ENST00000393824 COL4A3BPQ9Y5P4 624 aa11.94□□□□□ -0.5
CUX1-204ENST00000393824 CYP3A7-CYP3A51PA0A087WV96 503 aa11.93□□□□□ -0.5
CUX1-204ENST00000393824 TESPA1A2RU30 521 aaPredicted RBP11.93□□□□□ -0.5
CUX1-204ENST00000393824 DPPA5A6NC42 116 aa11.93□□□□□ -0.5
CUX1-204ENST00000393824 E7ENQ6 273 aa11.93□□□□□ -0.5
CUX1-204ENST00000393824 AOC2O75106 756 aa11.93□□□□□ -0.5
CUX1-204ENST00000393824 SHBGP04278 402 aa11.93□□□□□ -0.5
CUX1-204ENST00000393824 ARP10275 920 aa11.93□□□□□ -0.5
CUX1-204ENST00000393824 ITGA4P13612 1032 aa11.93□□□□□ -0.5
CUX1-204ENST00000393824 CYP3A7P24462 503 aa11.93□□□□□ -0.5
CUX1-204ENST00000393824 SKIV2L2P42285 1042 aaKnown RBP11.93□□□□□ -0.5
CUX1-204ENST00000393824 MRPS35P82673 323 aaKnown RBP11.93□□□□□ -0.5
CUX1-204ENST00000393824 LBRQ14739 615 aaKnown RBP11.93□□□□□ -0.5
CUX1-204ENST00000393824 TMEM266Q2M3C6 531 aa11.93□□□□□ -0.5
CUX1-204ENST00000393824 ETNPPLQ8TBG4 499 aa11.93□□□□□ -0.5
CUX1-204ENST00000393824 NEK9Q8TD19 979 aa11.93□□□□□ -0.5
CUX1-204ENST00000393824 HPS3Q969F9 1004 aa11.93□□□□□ -0.5
CUX1-204ENST00000393824 MBOAT7Q96N66 472 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms