RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 PIGOQ8TEQ8 1089 aa10.76□□□□□ -0.69
CLIP1-202ENST00000358808 SCFD1Q8WVM8 642 aa10.76□□□□□ -0.69
CLIP1-202ENST00000358808 RMDN3Q96TC7 470 aa10.76□□□□□ -0.69
CLIP1-202ENST00000358808 UNC45AQ9H3U1 944 aa10.76□□□□□ -0.69
CLIP1-202ENST00000358808 PLEKHA5Q9HAU0 1116 aa10.76□□□□□ -0.69
CLIP1-202ENST00000358808 CYP4F11Q9HBI6 524 aa10.76□□□□□ -0.69
CLIP1-202ENST00000358808 PSD3Q9NYI0 1048 aa10.76□□□□□ -0.69
CLIP1-202ENST00000358808 TTC7AQ9ULT0 858 aaPredicted RBP10.76□□□□□ -0.69
CLIP1-202ENST00000358808 SH3BP1Q9Y3L3 701 aa10.76□□□□□ -0.69
CLIP1-202ENST00000358808 ABCB11O95342 1321 aa10.76□□□□□ -0.69
CLIP1-202ENST00000358808 RASSF10A6NK89 507 aa10.76□□□□□ -0.69
CLIP1-202ENST00000358808 KDM1AO60341 852 aa10.76□□□□□ -0.69
CLIP1-202ENST00000358808 TADA2AO75478 443 aa10.76□□□□□ -0.69
CLIP1-202ENST00000358808 PDIA3P30101 505 aaKnown RBP10.76□□□□□ -0.69
CLIP1-202ENST00000358808 CRKP46108 304 aa10.76□□□□□ -0.69
CLIP1-202ENST00000358808 SLC16A1P53985 500 aa10.76□□□□□ -0.69
CLIP1-202ENST00000358808 DMTNQ08495 405 aa10.76□□□□□ -0.69
CLIP1-202ENST00000358808 FAM83BQ5T0W9 1011 aa10.76□□□□□ -0.69
CLIP1-202ENST00000358808 ERAP2Q6P179 960 aa10.76□□□□□ -0.69
CLIP1-202ENST00000358808 APOBEC3FQ8IUX4 373 aaKnown RBP10.76□□□□□ -0.69
CLIP1-202ENST00000358808 FOXP4Q8IVH2 680 aaPredicted RBP10.76□□□□□ -0.69
CLIP1-202ENST00000358808 GRAMD1CQ8IYS0 662 aa10.76□□□□□ -0.69
CLIP1-202ENST00000358808 PPP1R36Q96LQ0 422 aa10.76□□□□□ -0.69
CLIP1-202ENST00000358808 ELAC2Q9BQ52 826 aaKnown RBP10.76□□□□□ -0.69
CLIP1-202ENST00000358808 RNF26Q9BY78 433 aaPredicted RBP10.76□□□□□ -0.69
CLIP1-202ENST00000358808 C2orf40Q9H1Z8 148 aa10.76□□□□□ -0.69
CLIP1-202ENST00000358808 TMEM245Q9H330 911 aa10.76□□□□□ -0.69
CLIP1-202ENST00000358808 STN1Q9H668 368 aaKnown RBP10.76□□□□□ -0.69
CLIP1-202ENST00000358808 DCCP43146 1447 aa10.76□□□□□ -0.69
CLIP1-202ENST00000358808 ASAP2O43150 1006 aa10.75□□□□□ -0.69
CLIP1-202ENST00000358808 FYNP06241 537 aa10.75□□□□□ -0.69
CLIP1-202ENST00000358808 EN1Q05925 392 aaPredicted RBP10.75□□□□□ -0.69
CLIP1-202ENST00000358808 CENPPQ6IPU0 288 aa10.75□□□□□ -0.69
CLIP1-202ENST00000358808 HIBCHQ6NVY1 386 aaPredicted RBP10.75□□□□□ -0.69
CLIP1-202ENST00000358808 LRRC8BQ6P9F7 803 aa10.75□□□□□ -0.69
CLIP1-202ENST00000358808 KRT77Q7Z794 578 aa10.75□□□□□ -0.69
CLIP1-202ENST00000358808 LCORLQ8N3X6 602 aa10.75□□□□□ -0.69
CLIP1-202ENST00000358808 FBXO18Q8NFZ0 1043 aa10.75□□□□□ -0.69
CLIP1-202ENST00000358808 SLC13A1Q9BZW2 595 aa10.75□□□□□ -0.69
CLIP1-202ENST00000358808 THAP9Q9H5L6 903 aa10.75□□□□□ -0.69
CLIP1-202ENST00000358808 PLCG1P19174 1290 aa10.75□□□□□ -0.69
CLIP1-202ENST00000358808 ADD2P35612 726 aa10.75□□□□□ -0.69
CLIP1-202ENST00000358808 KRT17Q04695 432 aa10.75□□□□□ -0.69
CLIP1-202ENST00000358808 TP53BP2Q13625 1128 aa10.75□□□□□ -0.69
CLIP1-202ENST00000358808 MAPRE2Q15555 327 aa10.75□□□□□ -0.69
CLIP1-202ENST00000358808 TSEN34Q9BSV6 310 aaKnown RBP10.75□□□□□ -0.69
CLIP1-202ENST00000358808 KIAA1586Q9HCI6 787 aa10.75□□□□□ -0.69
CLIP1-202ENST00000358808 PPP6R2O75170 966 aa10.75□□□□□ -0.69
CLIP1-202ENST00000358808 NR1D1P20393 614 aa10.75□□□□□ -0.69
CLIP1-202ENST00000358808 SERPINB10P48595 397 aa10.75□□□□□ -0.69
CLIP1-202ENST00000358808 CDK17Q00537 523 aa10.75□□□□□ -0.69
CLIP1-202ENST00000358808 FAM47EQ6ZV65 393 aa10.75□□□□□ -0.69
CLIP1-202ENST00000358808 PLD3Q8IV08 490 aa10.75□□□□□ -0.69
CLIP1-202ENST00000358808 KIF12Q96FN5 646 aa10.75□□□□□ -0.69
CLIP1-202ENST00000358808 BHMT2Q9H2M3 363 aa10.75□□□□□ -0.69
CLIP1-202ENST00000358808 FCER1AP12319 257 aa10.75□□□□□ -0.69
CLIP1-202ENST00000358808 NUP93Q8N1F7 819 aa10.75□□□□□ -0.69
CLIP1-202ENST00000358808 TSC22D3Q99576 134 aa10.75□□□□□ -0.69
CLIP1-202ENST00000358808 ZFYVE1Q9HBF4 777 aa10.75□□□□□ -0.69
CLIP1-202ENST00000358808 BFARQ9NZS9 450 aa10.75□□□□□ -0.69
CLIP1-202ENST00000358808 RNF14Q9UBS8 474 aa10.75□□□□□ -0.69
CLIP1-202ENST00000358808 DNAJC12Q9UKB3 198 aa10.75□□□□□ -0.69
CLIP1-202ENST00000358808 PKP3Q9Y446 797 aa10.75□□□□□ -0.69
CLIP1-202ENST00000358808 TNPO2O14787 897 aaKnown RBP10.74□□□□□ -0.69
CLIP1-202ENST00000358808 ANGPT2O15123 496 aa10.74□□□□□ -0.69
CLIP1-202ENST00000358808 TOMM70O94826 608 aa10.74□□□□□ -0.69
CLIP1-202ENST00000358808 FAM107AO95990 144 aa10.74□□□□□ -0.69
CLIP1-202ENST00000358808 ASNSP08243 561 aa10.74□□□□□ -0.69
CLIP1-202ENST00000358808 RFX3P48380 749 aa10.74□□□□□ -0.69
CLIP1-202ENST00000358808 SULT1E1P49888 294 aa10.74□□□□□ -0.69
CLIP1-202ENST00000358808 TRIM71Q2Q1W2 868 aaKnown RBP10.74□□□□□ -0.69
CLIP1-202ENST00000358808 MCPH1Q8NEM0 835 aa10.74□□□□□ -0.69
CLIP1-202ENST00000358808 RNF25Q96BH1 459 aaPredicted RBP10.74□□□□□ -0.69
CLIP1-202ENST00000358808 OTUD5Q96G74 571 aa10.74□□□□□ -0.69
CLIP1-202ENST00000358808 C11orf70Q9BRQ4 267 aa10.74□□□□□ -0.69
CLIP1-202ENST00000358808 RWDD2AQ9UIY3 292 aa10.74□□□□□ -0.69
CLIP1-202ENST00000358808 RRP15Q9Y3B9 282 aaKnown RBP10.74□□□□□ -0.69
CLIP1-202ENST00000358808 ADAMTS13Q76LX8 1427 aa10.74□□□□□ -0.69
CLIP1-202ENST00000358808 LRRIQ3A6PVS8 624 aaPredicted RBP10.74□□□□□ -0.69
CLIP1-202ENST00000358808 HMGB3O15347 200 aaKnown RBP10.74□□□□□ -0.69
CLIP1-202ENST00000358808 SLC16A4O15374 487 aa10.74□□□□□ -0.69
CLIP1-202ENST00000358808 TRAPPC3O43617 180 aa10.74□□□□□ -0.69
CLIP1-202ENST00000358808 CYTH3O43739 400 aa10.74□□□□□ -0.69
CLIP1-202ENST00000358808 MLNP12872 115 aa10.74□□□□□ -0.69
CLIP1-202ENST00000358808 SCRN1Q12765 414 aa10.74□□□□□ -0.69
CLIP1-202ENST00000358808 DPYDQ12882 1025 aa10.74□□□□□ -0.69
CLIP1-202ENST00000358808 ZMYM1Q5SVZ6 1142 aa10.74□□□□□ -0.69
CLIP1-202ENST00000358808 HDDC2Q7Z4H3 204 aa10.74□□□□□ -0.69
CLIP1-202ENST00000358808 HS6ST3Q8IZP7 471 aa10.74□□□□□ -0.69
CLIP1-202ENST00000358808 ICA1LQ8NDH6 482 aa10.74□□□□□ -0.69
CLIP1-202ENST00000358808 RABGGTAQ92696 567 aa10.74□□□□□ -0.69
CLIP1-202ENST00000358808 IQCA1LA6NCM1 817 aa10.74□□□□□ -0.69
CLIP1-202ENST00000358808 LZTS3O60299 673 aaPredicted RBP10.74□□□□□ -0.69
CLIP1-202ENST00000358808 SASH1O94885 1247 aa10.74□□□□□ -0.69
CLIP1-202ENST00000358808 FKBP9O95302 570 aa10.74□□□□□ -0.69
CLIP1-202ENST00000358808 CD2BP2O95400 341 aaKnown RBP10.74□□□□□ -0.69
CLIP1-202ENST00000358808 PRELPP51888 382 aa10.74□□□□□ -0.69
CLIP1-202ENST00000358808 AP2B1P63010 937 aa10.74□□□□□ -0.69
CLIP1-202ENST00000358808 IRAK1BP1Q5VVH5 260 aa10.74□□□□□ -0.69
CLIP1-202ENST00000358808 FKBP9P1Q75LS8 142 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms