RNA–Protein interactions for RNA: ENST00000348495.10

SSBP4-202, Transcript of single stranded DNA binding protein 4, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene SSBP4, Length 1,721 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-202ENST00000348495 UTP18Q9Y5J1 556 aaKnown RBP eCLIP29.45■■■□□ 2.3
SSBP4-202ENST00000348495 KIAA0355O15063 1070 aa29.44■■■□□ 2.3
SSBP4-202ENST00000348495 PRKCSHP14314 528 aaPredicted RBP29.44■■■□□ 2.3
SSBP4-202ENST00000348495 CYP2C18P33260 490 aa29.44■■■□□ 2.3
SSBP4-202ENST00000348495 POU5F1Q01860 360 aaKnown RBP29.44■■■□□ 2.3
SSBP4-202ENST00000348495 NR1I3Q14994 352 aa29.44■■■□□ 2.3
SSBP4-202ENST00000348495 TRAIPQ9BWF2 469 aa29.44■■■□□ 2.3
SSBP4-202ENST00000348495 TRIM5Q9C035 493 aa29.44■■■□□ 2.3
SSBP4-202ENST00000348495 RTN4Q9NQC3 1192 aaKnown RBP29.44■■■□□ 2.3
SSBP4-202ENST00000348495 RBAKQ9NYW8 714 aaPredicted RBP29.44■■■□□ 2.3
SSBP4-202ENST00000348495 CLTAP09496 248 aa29.43■■■□□ 2.3
SSBP4-202ENST00000348495 STAG3L1P0CL83 205 aa29.43■■■□□ 2.3
SSBP4-202ENST00000348495 KRT13P13646 458 aa29.43■■■□□ 2.3
SSBP4-202ENST00000348495 GRM5P41594 1212 aa29.43■■■□□ 2.3
SSBP4-202ENST00000348495 VAMP7P51809 220 aa29.43■■■□□ 2.3
SSBP4-202ENST00000348495 PPP2R3AQ06190 1150 aa29.43■■■□□ 2.3
SSBP4-202ENST00000348495 VWA3BQ502W6 1294 aa29.43■■■□□ 2.3
SSBP4-202ENST00000348495 C1orf220Q5T0J3 134 aa29.43■■■□□ 2.3
SSBP4-202ENST00000348495 TWF2Q6IBS0 349 aaKnown RBP29.43■■■□□ 2.3
SSBP4-202ENST00000348495 BRSK2Q8IWQ3 736 aa29.43■■■□□ 2.3
SSBP4-202ENST00000348495 TMEM192Q8IY95 271 aa29.43■■■□□ 2.3
SSBP4-202ENST00000348495 TMC2Q8TDI7 906 aa29.43■■■□□ 2.3
SSBP4-202ENST00000348495 PARD3BQ8TEW8 1205 aa29.43■■■□□ 2.3
SSBP4-202ENST00000348495 TRIM43BA6NCK2 446 aa29.42■■■□□ 2.3
SSBP4-202ENST00000348495 LGALS16A8MUM7 142 aa29.42■■■□□ 2.3
SSBP4-202ENST00000348495 MGEA5O60502 916 aa29.42■■■□□ 2.3
SSBP4-202ENST00000348495 ZNF75DP51815 510 aa29.42■■■□□ 2.3
SSBP4-202ENST00000348495 WNT7BP56706 349 aa29.42■■■□□ 2.3
SSBP4-202ENST00000348495 PSMD6Q15008 389 aa29.42■■■□□ 2.3
SSBP4-202ENST00000348495 ENOX2Q16206 610 aaKnown RBP29.42■■■□□ 2.3
SSBP4-202ENST00000348495 PLEKHG4Q58EX7 1191 aa29.42■■■□□ 2.3
SSBP4-202ENST00000348495 TRIM43Q96BQ3 446 aaPredicted RBP29.42■■■□□ 2.3
SSBP4-202ENST00000348495 SCLYQ96I15 445 aa29.42■■■□□ 2.3
SSBP4-202ENST00000348495 NDST4Q9H3R1 872 aa29.42■■■□□ 2.3
SSBP4-202ENST00000348495 ALPK3Q96L96 1907 aa29.42■■■□□ 2.3
SSBP4-202ENST00000348495 MEFVO15553 781 aaPredicted RBP29.42■■■□□ 2.3
SSBP4-202ENST00000348495 CXCL10P02778 98 aa29.42■■■□□ 2.3
SSBP4-202ENST00000348495 CCL23P55773 120 aa29.42■■■□□ 2.3
SSBP4-202ENST00000348495 OSTNP61366 133 aa29.42■■■□□ 2.3
SSBP4-202ENST00000348495 DLG4P78352 724 aa29.42■■■□□ 2.3
SSBP4-202ENST00000348495 ZSCAN20P17040 1043 aaPredicted RBP29.41■■■□□ 2.3
SSBP4-202ENST00000348495 CLDN10P78369 228 aa29.41■■■□□ 2.3
SSBP4-202ENST00000348495 FILIP1LQ4L180 1135 aa29.41■■■□□ 2.3
SSBP4-202ENST00000348495 DCAF17Q5H9S7 520 aaPredicted RBP29.41■■■□□ 2.3
SSBP4-202ENST00000348495 FAM43BQ6ZT52 329 aaPredicted RBP29.41■■■□□ 2.3
SSBP4-202ENST00000348495 SMG8Q8ND04 991 aaKnown RBP29.41■■■□□ 2.3
SSBP4-202ENST00000348495 TRIM6Q9C030 488 aaPredicted RBP29.41■■■□□ 2.3
SSBP4-202ENST00000348495 MKI67P46013 3256 aaKnown RBP29.41■■■□□ 2.3
SSBP4-202ENST00000348495 CBFA2T2O43439 604 aa29.4■■■□□ 2.3
SSBP4-202ENST00000348495 ADCY5O95622 1261 aa29.4■■■□□ 2.3
SSBP4-202ENST00000348495 TPM2P07951 284 aa29.4■■■□□ 2.3
SSBP4-202ENST00000348495 KCNH2Q12809 1159 aa29.4■■■□□ 2.3
SSBP4-202ENST00000348495 SCN5AQ14524 2016 aa29.4■■■□□ 2.3
SSBP4-202ENST00000348495 CCDC127Q96BQ5 260 aa29.4■■■□□ 2.3
SSBP4-202ENST00000348495 NXF3Q9H4D5 531 aaKnown RBP29.4■■■□□ 2.3
SSBP4-202ENST00000348495 FAM105AQ9NUU6 356 aa29.4■■■□□ 2.3
SSBP4-202ENST00000348495 TIMP1P01033 207 aa29.4■■■□□ 2.3
SSBP4-202ENST00000348495 TRIM49P0CI25 452 aa29.4■■■□□ 2.3
SSBP4-202ENST00000348495 TRIM49CP0CI26 452 aa29.4■■■□□ 2.3
SSBP4-202ENST00000348495 ITGB8P26012 769 aa29.4■■■□□ 2.3
SSBP4-202ENST00000348495 MRFAP1L1Q96HT8 127 aa29.4■■■□□ 2.3
SSBP4-202ENST00000348495 ACAP3Q96P50 834 aa29.4■■■□□ 2.3
SSBP4-202ENST00000348495 RPF1Q9H9Y2 349 aaKnown RBP29.4■■■□□ 2.3
SSBP4-202ENST00000348495 PDE11AQ9HCR9 933 aa29.4■■■□□ 2.3
SSBP4-202ENST00000348495 IPPQ9Y573 584 aa29.4■■■□□ 2.3
SSBP4-202ENST00000348495 PCDHB2Q9Y5E7 798 aa29.4■■■□□ 2.3
SSBP4-202ENST00000348495 LRRIQ3A6PVS8 624 aaPredicted RBP29.39■■■□□ 2.3
SSBP4-202ENST00000348495 TEX33O43247 280 aa29.39■■■□□ 2.3
SSBP4-202ENST00000348495 CXCL8P10145 99 aa29.39■■■□□ 2.3
SSBP4-202ENST00000348495 TCERG1LQ5VWI1 586 aa29.39■■■□□ 2.3
SSBP4-202ENST00000348495 USP37Q86T82 979 aa29.39■■■□□ 2.3
SSBP4-202ENST00000348495 ADAM2Q99965 735 aa29.39■■■□□ 2.3
SSBP4-202ENST00000348495 SNTG2Q9NY99 539 aa29.39■■■□□ 2.3
SSBP4-202ENST00000348495 HES2Q9Y543 173 aa29.39■■■□□ 2.3
SSBP4-202ENST00000348495 AFPP02771 609 aaKnown RBP29.38■■■□□ 2.29
SSBP4-202ENST00000348495 SLC10A6Q3KNW5 377 aa29.38■■■□□ 2.29
SSBP4-202ENST00000348495 RTN4RL1Q86UN2 441 aaPredicted RBP29.38■■■□□ 2.29
SSBP4-202ENST00000348495 DBF4BQ8NFT6 615 aa29.38■■■□□ 2.29
SSBP4-202ENST00000348495 LINC01599Q8WXQ3 324 aa29.38■■■□□ 2.29
SSBP4-202ENST00000348495 VWCEQ96DN2 955 aa29.38■■■□□ 2.29
SSBP4-202ENST00000348495 CCDC94Q9BW85 323 aaPredicted RBP29.38■■■□□ 2.29
SSBP4-202ENST00000348495 FTHL17Q9BXU8 183 aa29.38■■■□□ 2.29
SSBP4-202ENST00000348495 PRDM5Q9NQX1 630 aaPredicted RBP29.38■■■□□ 2.29
SSBP4-202ENST00000348495 ANK1P16157 1881 aa29.38■■■□□ 2.29
SSBP4-202ENST00000348495 ZNF623O75123 536 aa29.37■■■□□ 2.29
SSBP4-202ENST00000348495 RFC2P35250 354 aa29.37■■■□□ 2.29
SSBP4-202ENST00000348495 PPP3CAQ08209 521 aa29.37■■■□□ 2.29
SSBP4-202ENST00000348495 SEPT8Q92599 483 aa29.37■■■□□ 2.29
SSBP4-202ENST00000348495 APBB2Q92870 758 aa29.37■■■□□ 2.29
SSBP4-202ENST00000348495 POP1Q99575 1024 aaKnown RBP29.37■■■□□ 2.29
SSBP4-202ENST00000348495 RGS18Q9NS28 235 aa29.37■■■□□ 2.29
SSBP4-202ENST00000348495 TET1Q8NFU7 2136 aa29.37■■■□□ 2.29
SSBP4-202ENST00000348495 A0A0U1RQF3 1178 aa29.37■■■□□ 2.29
SSBP4-202ENST00000348495 TTC26A0AVF1 554 aa29.37■■■□□ 2.29
SSBP4-202ENST00000348495 IL18RAPO95256 599 aa29.37■■■□□ 2.29
SSBP4-202ENST00000348495 TPM3P06753 285 aa29.37■■■□□ 2.29
SSBP4-202ENST00000348495 MRPL10Q7Z7H8 261 aaKnown RBP29.37■■■□□ 2.29
SSBP4-202ENST00000348495 RNF39Q9H2S5 420 aa29.37■■■□□ 2.29
SSBP4-202ENST00000348495 DLATP10515 647 aaKnown RBP29.36■■■□□ 2.29
SSBP4-202ENST00000348495 PBX1P40424 430 aa29.36■■■□□ 2.29
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms