RNA–Protein interactions for RNA: ENST00000278385.10

CD44-202, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 697 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-202ENST00000278385 SLC26A6Q9BXS9 759 aa5.24□□□□□ -1.57
CD44-202ENST00000278385 ZNF552Q9H707 407 aaPredicted RBP5.24□□□□□ -1.57
CD44-202ENST00000278385 SP110Q9HB58 689 aa5.24□□□□□ -1.57
CD44-202ENST00000278385 TOPORSQ9NS56 1045 aaPredicted RBP5.24□□□□□ -1.57
CD44-202ENST00000278385 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP5.24□□□□□ -1.57
CD44-202ENST00000278385 MAFFQ9ULX9 164 aa5.24□□□□□ -1.57
CD44-202ENST00000278385 CRYL1Q9Y2S2 319 aa5.24□□□□□ -1.57
CD44-202ENST00000278385 TIMM13Q9Y5L4 95 aaPredicted RBP5.24□□□□□ -1.57
CD44-202ENST00000278385 SPATA31A5Q5VU36 1347 aa5.23□□□□□ -1.57
CD44-202ENST00000278385 SPATA31A7Q8IWB4 1347 aa5.23□□□□□ -1.57
CD44-202ENST00000278385 KIAA1210Q9ULL0 1709 aa5.23□□□□□ -1.57
CD44-202ENST00000278385 SYNDIG1LA6NDD5 238 aa5.23□□□□□ -1.57
CD44-202ENST00000278385 RASA4BC9J798 803 aa5.23□□□□□ -1.57
CD44-202ENST00000278385 F8W031 263 aaPredicted RBP5.23□□□□□ -1.57
CD44-202ENST00000278385 RASA4O43374 803 aa5.23□□□□□ -1.57
CD44-202ENST00000278385 TIPRLO75663 272 aa5.23□□□□□ -1.57
CD44-202ENST00000278385 IL33O95760 270 aa5.23□□□□□ -1.57
CD44-202ENST00000278385 TACR1P25103 407 aa5.23□□□□□ -1.57
CD44-202ENST00000278385 LTBRP36941 435 aa5.23□□□□□ -1.57
CD44-202ENST00000278385 IL6STP40189 918 aaPredicted RBP5.23□□□□□ -1.57
CD44-202ENST00000278385 TNFAIP2Q03169 654 aa5.23□□□□□ -1.57
CD44-202ENST00000278385 GRM1Q13255 1194 aa5.23□□□□□ -1.57
CD44-202ENST00000278385 CHRNA2Q15822 529 aa5.23□□□□□ -1.57
CD44-202ENST00000278385 CFAP100Q494V2 611 aa5.23□□□□□ -1.57
CD44-202ENST00000278385 RRP12Q5JTH9 1297 aaKnown RBP5.23□□□□□ -1.57
CD44-202ENST00000278385 ZNF648Q5T619 568 aaPredicted RBP5.23□□□□□ -1.57
CD44-202ENST00000278385 PLBD1Q6P4A8 553 aa5.23□□□□□ -1.57
CD44-202ENST00000278385 NSMFQ6X4W1 530 aa5.23□□□□□ -1.57
CD44-202ENST00000278385 ZNF513Q8N8E2 541 aaPredicted RBP5.23□□□□□ -1.57
CD44-202ENST00000278385 ARL10Q8N8L6 244 aa5.23□□□□□ -1.57
CD44-202ENST00000278385 GSTCDQ8NEC7 633 aa5.23□□□□□ -1.57
CD44-202ENST00000278385 VMP1Q96GC9 406 aa5.23□□□□□ -1.57
CD44-202ENST00000278385 PEX11GQ96HA9 241 aa5.23□□□□□ -1.57
CD44-202ENST00000278385 UBXN10Q96LJ8 280 aa5.23□□□□□ -1.57
CD44-202ENST00000278385 FAM193BQ96PV7 902 aaPredicted RBP5.23□□□□□ -1.57
CD44-202ENST00000278385 SPAG5Q96R06 1193 aa5.23□□□□□ -1.57
CD44-202ENST00000278385 MCMBPQ9BTE3 642 aa5.23□□□□□ -1.57
CD44-202ENST00000278385 LSM14BQ9BX40 385 aaKnown RBP5.23□□□□□ -1.57
CD44-202ENST00000278385 MRPL9Q9BYD2 267 aaKnown RBP5.23□□□□□ -1.57
CD44-202ENST00000278385 RNF38Q9H0F5 515 aa5.23□□□□□ -1.57
CD44-202ENST00000278385 AP5M1Q9H0R1 490 aa5.23□□□□□ -1.57
CD44-202ENST00000278385 LMAN2LQ9H0V9 348 aa5.23□□□□□ -1.57
CD44-202ENST00000278385 PLEKHA5Q9HAU0 1116 aa5.23□□□□□ -1.57
CD44-202ENST00000278385 ARFGAP3Q9NP61 516 aa5.23□□□□□ -1.57
CD44-202ENST00000278385 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP5.23□□□□□ -1.57
CD44-202ENST00000278385 GULP1Q9UBP9 304 aa5.23□□□□□ -1.57
CD44-202ENST00000278385 TMEM98Q9Y2Y6 226 aa5.23□□□□□ -1.57
CD44-202ENST00000278385 RWDD3Q9Y3V2 267 aa5.23□□□□□ -1.57
CD44-202ENST00000278385 KIAA0232Q92628 1395 aa5.23□□□□□ -1.57
CD44-202ENST00000278385 RALGAPBQ86X10 1494 aa5.23□□□□□ -1.57
CD44-202ENST00000278385 USP32Q8NFA0 1604 aa5.23□□□□□ -1.57
CD44-202ENST00000278385 USP19O94966 1318 aa5.23□□□□□ -1.57
CD44-202ENST00000278385 TTC21BQ7Z4L5 1316 aa5.23□□□□□ -1.57
CD44-202ENST00000278385 TTC21AQ8NDW8 1320 aa5.23□□□□□ -1.57
CD44-202ENST00000278385 CPDO75976 1380 aa5.22□□□□□ -1.57
CD44-202ENST00000278385 C7orf72A4D263 438 aa5.22□□□□□ -1.57
CD44-202ENST00000278385 RRN3P2A6NIE6 340 aa5.22□□□□□ -1.57
CD44-202ENST00000278385 RFXAPO00287 272 aa5.22□□□□□ -1.57
CD44-202ENST00000278385 PRODHO43272 600 aa5.22□□□□□ -1.57
CD44-202ENST00000278385 AP1G1O43747 822 aa5.22□□□□□ -1.57
CD44-202ENST00000278385 PQBP1O60828 265 aaKnown RBP5.22□□□□□ -1.57
CD44-202ENST00000278385 FUCA1P04066 466 aa5.22□□□□□ -1.57
CD44-202ENST00000278385 C6orf222P0C671 652 aaPredicted RBP5.22□□□□□ -1.57
CD44-202ENST00000278385 PFKLP17858 780 aa5.22□□□□□ -1.57
CD44-202ENST00000278385 CTNNA1P35221 906 aaKnown RBP5.22□□□□□ -1.57
CD44-202ENST00000278385 IGFALSP35858 605 aa5.22□□□□□ -1.57
CD44-202ENST00000278385 COPAP53621 1224 aa5.22□□□□□ -1.57
CD44-202ENST00000278385 BPIFB3P59826 476 aa5.22□□□□□ -1.57
CD44-202ENST00000278385 PLIN5Q00G26 463 aa5.22□□□□□ -1.57
CD44-202ENST00000278385 MVKQ03426 396 aa5.22□□□□□ -1.57
CD44-202ENST00000278385 MAP4K2Q12851 820 aa5.22□□□□□ -1.57
CD44-202ENST00000278385 TARBP2Q15633 366 aaKnown RBP5.22□□□□□ -1.57
CD44-202ENST00000278385 SLC45A4Q5BKX6 768 aa5.22□□□□□ -1.57
CD44-202ENST00000278385 RILPL1Q5EBL4 403 aa5.22□□□□□ -1.57
CD44-202ENST00000278385 DGKKQ5KSL6 1271 aa5.22□□□□□ -1.57
CD44-202ENST00000278385 IFIT1BQ5T764 474 aaKnown RBP5.22□□□□□ -1.57
CD44-202ENST00000278385 CDCA2Q69YH5 1023 aaPredicted RBP5.22□□□□□ -1.57
CD44-202ENST00000278385 ITPRIPL1Q6GPH6 555 aa5.22□□□□□ -1.57
CD44-202ENST00000278385 ZNF449Q6P9G9 518 aa5.22□□□□□ -1.57
CD44-202ENST00000278385 USP53Q70EK8 1073 aa5.22□□□□□ -1.57
CD44-202ENST00000278385 COLGALT2Q8IYK4 626 aa5.22□□□□□ -1.57
CD44-202ENST00000278385 TEX9Q8N6V9 391 aa5.22□□□□□ -1.57
CD44-202ENST00000278385 SHISA4Q96DD7 197 aa5.22□□□□□ -1.57
CD44-202ENST00000278385 TMEM169Q96HH4 297 aa5.22□□□□□ -1.57
CD44-202ENST00000278385 TBCBQ99426 244 aa5.22□□□□□ -1.57
CD44-202ENST00000278385 ORAI3Q9BRQ5 295 aa5.22□□□□□ -1.57
CD44-202ENST00000278385 TSPY26PQ9H489 355 aa5.22□□□□□ -1.57
CD44-202ENST00000278385 SLC52A2Q9HAB3 445 aa5.22□□□□□ -1.57
CD44-202ENST00000278385 VTA1Q9NP79 307 aa5.22□□□□□ -1.57
CD44-202ENST00000278385 MRGBPQ9NV56 204 aa5.22□□□□□ -1.57
CD44-202ENST00000278385 MARCH2Q9P0N8 246 aa5.22□□□□□ -1.57
CD44-202ENST00000278385 GIMAP2Q9UG22 337 aa5.22□□□□□ -1.57
CD44-202ENST00000278385 NDOR1Q9UHB4 597 aa5.22□□□□□ -1.57
CD44-202ENST00000278385 USP6P35125 1406 aa5.22□□□□□ -1.57
CD44-202ENST00000278385 SSH2Q76I76 1423 aa5.22□□□□□ -1.57
CD44-202ENST00000278385 SPATA31A1Q5TZJ5 1347 aa5.22□□□□□ -1.57
CD44-202ENST00000278385 ST20-MTHFSA0A0A6YYL1 179 aa5.21□□□□□ -1.58
CD44-202ENST00000278385 TEX51A0A1B0GUA7 166 aa5.21□□□□□ -1.58
CD44-202ENST00000278385 LOC101059915A0A1B0GWI6 518 aaPredicted RBP5.21□□□□□ -1.58
CD44-202ENST00000278385 IQCJ-SCHIP1C9J366 451 aaPredicted RBP5.21□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms