RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 CNKSR1Q969H4 720 aa22.86■■□□□ 1.25
TRIM28-201ENST00000253024 SCLT1Q96NL6 688 aa22.86■■□□□ 1.25
TRIM28-201ENST00000253024 PABPC3Q9H361 631 aaKnown RBP22.86■■□□□ 1.25
TRIM28-201ENST00000253024 TMEM206Q9H813 350 aa22.86■■□□□ 1.25
TRIM28-201ENST00000253024 RASAL2Q9UJF2 1139 aa22.86■■□□□ 1.25
TRIM28-201ENST00000253024 ADGRA3Q8IWK6 1321 aa22.86■■□□□ 1.25
TRIM28-201ENST00000253024 PPFIA2O75334 1257 aa22.85■■□□□ 1.25
TRIM28-201ENST00000253024 RRM1P23921 792 aa22.85■■□□□ 1.25
TRIM28-201ENST00000253024 SGO2Q562F6 1265 aa22.85■■□□□ 1.25
TRIM28-201ENST00000253024 SWSAP1Q6NVH7 229 aa22.85■■□□□ 1.25
TRIM28-201ENST00000253024 SV2AQ7L0J3 742 aa22.85■■□□□ 1.25
TRIM28-201ENST00000253024 DYDC1Q8WWB3 177 aa22.85■■□□□ 1.25
TRIM28-201ENST00000253024 ATRNL1Q5VV63 1379 aa22.85■■□□□ 1.25
TRIM28-201ENST00000253024 PI4K2BG5E9Z4 385 aa22.85■■□□□ 1.25
TRIM28-201ENST00000253024 PEX5P50542 639 aa22.85■■□□□ 1.25
TRIM28-201ENST00000253024 BAATQ14032 418 aaPredicted RBP22.85■■□□□ 1.25
TRIM28-201ENST00000253024 MICALCLQ6ZW33 695 aa22.85■■□□□ 1.25
TRIM28-201ENST00000253024 SLC13A5Q86YT5 568 aaPredicted RBP22.85■■□□□ 1.25
TRIM28-201ENST00000253024 LRRC34Q8IZ02 419 aa22.85■■□□□ 1.25
TRIM28-201ENST00000253024 HAUS1Q96CS2 278 aa22.85■■□□□ 1.25
TRIM28-201ENST00000253024 TBX20Q9UMR3 447 aa22.85■■□□□ 1.25
TRIM28-201ENST00000253024 R3HDM2Q9Y2K5 976 aaKnown RBP22.85■■□□□ 1.25
TRIM28-201ENST00000253024 ICAM1P05362 532 aa22.84■■□□□ 1.25
TRIM28-201ENST00000253024 TNNI1P19237 187 aa22.84■■□□□ 1.25
TRIM28-201ENST00000253024 ZNF394Q53GI3 561 aa22.84■■□□□ 1.25
TRIM28-201ENST00000253024 XPO6Q96QU8 1125 aaKnown RBP22.84■■□□□ 1.25
TRIM28-201ENST00000253024 NAP1L3Q99457 506 aaPredicted RBP22.84■■□□□ 1.25
TRIM28-201ENST00000253024 RIT2Q99578 217 aa22.84■■□□□ 1.25
TRIM28-201ENST00000253024 SEPT9Q9UHD8 586 aaPredicted RBP22.84■■□□□ 1.25
TRIM28-201ENST00000253024 FEM1BQ9UK73 627 aa22.84■■□□□ 1.25
TRIM28-201ENST00000253024 LRRC37AA6NMS7 1700 aa22.84■■□□□ 1.25
TRIM28-201ENST00000253024 SYNGAP1Q96PV0 1343 aa22.84■■□□□ 1.25
TRIM28-201ENST00000253024 COILP38432 576 aaPredicted RBP22.84■■□□□ 1.25
TRIM28-201ENST00000253024 KRT17Q04695 432 aa22.84■■□□□ 1.25
TRIM28-201ENST00000253024 BYSLQ13895 437 aaKnown RBP22.84■■□□□ 1.25
TRIM28-201ENST00000253024 MTERF2Q49AM1 385 aa22.84■■□□□ 1.25
TRIM28-201ENST00000253024 B3GNT9Q6UX72 402 aa22.84■■□□□ 1.25
TRIM28-201ENST00000253024 CEP57Q86XR8 500 aa22.84■■□□□ 1.25
TRIM28-201ENST00000253024 SPIRE2Q8WWL2 714 aa22.84■■□□□ 1.25
TRIM28-201ENST00000253024 ATG4CQ96DT6 458 aa22.84■■□□□ 1.25
TRIM28-201ENST00000253024 FAM212AQ96EL1 285 aa22.84■■□□□ 1.25
TRIM28-201ENST00000253024 ZBTB45Q96K62 511 aaPredicted RBP22.84■■□□□ 1.25
TRIM28-201ENST00000253024 C11orf70Q9BRQ4 267 aa22.84■■□□□ 1.25
TRIM28-201ENST00000253024 STRA6Q9BX79 667 aa22.84■■□□□ 1.25
TRIM28-201ENST00000253024 ANKFY1Q9P2R3 1169 aa22.84■■□□□ 1.25
TRIM28-201ENST00000253024 WNT10BO00744 389 aa22.83■■□□□ 1.25
TRIM28-201ENST00000253024 SLC26A4O43511 780 aa22.83■■□□□ 1.25
TRIM28-201ENST00000253024 MAPK4P31152 587 aa22.83■■□□□ 1.25
TRIM28-201ENST00000253024 FNTAP49354 379 aa22.83■■□□□ 1.25
TRIM28-201ENST00000253024 KYNUQ16719 465 aa22.83■■□□□ 1.25
TRIM28-201ENST00000253024 CEP89Q96ST8 783 aa22.83■■□□□ 1.25
TRIM28-201ENST00000253024 INTS9Q9NV88 658 aaKnown RBP22.83■■□□□ 1.25
TRIM28-201ENST00000253024 CD58P19256 250 aa22.83■■□□□ 1.25
TRIM28-201ENST00000253024 EN1Q05925 392 aaPredicted RBP22.83■■□□□ 1.25
TRIM28-201ENST00000253024 DMP1Q13316 513 aaPredicted RBP22.83■■□□□ 1.25
TRIM28-201ENST00000253024 ATP13A4Q4VNC1 1196 aa22.83■■□□□ 1.25
TRIM28-201ENST00000253024 SLC39A4Q6P5W5 647 aa22.83■■□□□ 1.25
TRIM28-201ENST00000253024 PARD3BQ8TEW8 1205 aa22.83■■□□□ 1.25
TRIM28-201ENST00000253024 C7orf43Q8WVR3 580 aa22.83■■□□□ 1.25
TRIM28-201ENST00000253024 TMEM143Q96AN5 459 aa22.83■■□□□ 1.25
TRIM28-201ENST00000253024 MRIQ9BWK5 157 aa22.83■■□□□ 1.25
TRIM28-201ENST00000253024 MFAP3P55082 362 aa22.83■■□□□ 1.24
TRIM28-201ENST00000253024 PGM5Q15124 567 aa22.83■■□□□ 1.24
TRIM28-201ENST00000253024 E2F5Q15329 346 aa22.83■■□□□ 1.24
TRIM28-201ENST00000253024 ZBTB41Q5SVQ8 909 aa22.83■■□□□ 1.24
TRIM28-201ENST00000253024 GKAP1Q5VSY0 366 aaPredicted RBP22.83■■□□□ 1.24
TRIM28-201ENST00000253024 KRT39Q6A163 491 aa22.83■■□□□ 1.24
TRIM28-201ENST00000253024 PRPF38AQ8NAV1 312 aaKnown RBP22.83■■□□□ 1.24
TRIM28-201ENST00000253024 NT5C1BQ96P26 610 aa22.83■■□□□ 1.24
TRIM28-201ENST00000253024 PAIP2Q9BPZ3 127 aaKnown RBP22.83■■□□□ 1.24
TRIM28-201ENST00000253024 RAB20Q9NX57 234 aa22.83■■□□□ 1.24
TRIM28-201ENST00000253024 FAM71AQ8IYT1 594 aa22.82■■□□□ 1.24
TRIM28-201ENST00000253024 ZNF862O60290 1169 aa22.82■■□□□ 1.24
TRIM28-201ENST00000253024 CALCOCO2Q13137 446 aa22.82■■□□□ 1.24
TRIM28-201ENST00000253024 TMEM161BQ8NDZ6 487 aa22.82■■□□□ 1.24
TRIM28-201ENST00000253024 HELQQ8TDG4 1101 aa22.82■■□□□ 1.24
TRIM28-201ENST00000253024 ZKSCAN4Q969J2 545 aaPredicted RBP22.82■■□□□ 1.24
TRIM28-201ENST00000253024 C9orf72Q96LT7 481 aa22.82■■□□□ 1.24
TRIM28-201ENST00000253024 MTRF1LQ9UGC7 380 aaKnown RBP22.82■■□□□ 1.24
TRIM28-201ENST00000253024 TTC7AQ9ULT0 858 aaPredicted RBP22.82■■□□□ 1.24
TRIM28-201ENST00000253024 RASGRF2O14827 1237 aa22.81■■□□□ 1.24
TRIM28-201ENST00000253024 SPDYE2Q495Y8 402 aa22.81■■□□□ 1.24
TRIM28-201ENST00000253024 CYP4F22Q6NT55 531 aa22.81■■□□□ 1.24
TRIM28-201ENST00000253024 SAMD7Q7Z3H4 446 aa22.81■■□□□ 1.24
TRIM28-201ENST00000253024 TMEM130Q8N3G9 435 aa22.81■■□□□ 1.24
TRIM28-201ENST00000253024 GH1P01241 217 aa22.81■■□□□ 1.24
TRIM28-201ENST00000253024 SCP2P22307 547 aa22.81■■□□□ 1.24
TRIM28-201ENST00000253024 FAM160B2Q86V87 743 aa22.81■■□□□ 1.24
TRIM28-201ENST00000253024 HOOK3Q86VS8 718 aa22.81■■□□□ 1.24
TRIM28-201ENST00000253024 FBXL13Q8NEE6 735 aa22.81■■□□□ 1.24
TRIM28-201ENST00000253024 CDC42EP4Q9H3Q1 356 aaKnown RBP22.81■■□□□ 1.24
TRIM28-201ENST00000253024 ASNSP08243 561 aa22.8■■□□□ 1.24
TRIM28-201ENST00000253024 CHRNA3P32297 505 aa22.8■■□□□ 1.24
TRIM28-201ENST00000253024 PTGER2P43116 358 aa22.8■■□□□ 1.24
TRIM28-201ENST00000253024 RWDD2BP57060 319 aa22.8■■□□□ 1.24
TRIM28-201ENST00000253024 SEC14L1Q92503 715 aa22.8■■□□□ 1.24
TRIM28-201ENST00000253024 CHMP6Q96FZ7 201 aa22.8■■□□□ 1.24
TRIM28-201ENST00000253024 RPAP3Q9H6T3 665 aaPredicted RBP22.8■■□□□ 1.24
TRIM28-201ENST00000253024 SLC40A1Q9NP59 571 aa22.8■■□□□ 1.24
TRIM28-201ENST00000253024 MTUS1Q9ULD2 1270 aa22.8■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms