RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 C2orf40Q9H1Z8 148 aa13.94□□□□□ -0.18
PNKP-217ENST00000625216 NRDE2Q9H7Z3 1164 aa13.94□□□□□ -0.18
PNKP-217ENST00000625216 RSAD1Q9HA92 442 aa13.94□□□□□ -0.18
PNKP-217ENST00000625216 ENTPD7Q9NQZ7 604 aa13.94□□□□□ -0.18
PNKP-217ENST00000625216 TBC1D13Q9NVG8 400 aa13.94□□□□□ -0.18
PNKP-217ENST00000625216 FNDC1Q4ZHG4 1894 aaPredicted RBP13.93□□□□□ -0.18
PNKP-217ENST00000625216 ARID2Q68CP9 1835 aa13.93□□□□□ -0.18
PNKP-217ENST00000625216 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.93□□□□□ -0.18
PNKP-217ENST00000625216 A0A1B0GUA9 196 aa13.93□□□□□ -0.18
PNKP-217ENST00000625216 MBTPS2O43462 519 aa13.93□□□□□ -0.18
PNKP-217ENST00000625216 ZC3H11AO75152 810 aaKnown RBP eCLIP13.93□□□□□ -0.18
PNKP-217ENST00000625216 TBX10O75333 385 aa13.93□□□□□ -0.18
PNKP-217ENST00000625216 ALDH2P05091 517 aa13.93□□□□□ -0.18
PNKP-217ENST00000625216 GALTP07902 379 aa13.93□□□□□ -0.18
PNKP-217ENST00000625216 PRR29P0C7W0 189 aa13.93□□□□□ -0.18
PNKP-217ENST00000625216 SRGAP2BP0DMP2 458 aa13.93□□□□□ -0.18
PNKP-217ENST00000625216 PBX3P40426 434 aa13.93□□□□□ -0.18
PNKP-217ENST00000625216 UBA7P41226 1012 aa13.93□□□□□ -0.18
PNKP-217ENST00000625216 COASYQ13057 564 aa13.93□□□□□ -0.18
PNKP-217ENST00000625216 SMC1AQ14683 1233 aaKnown RBP13.93□□□□□ -0.18
PNKP-217ENST00000625216 PPP2R5AQ15172 486 aa13.93□□□□□ -0.18
PNKP-217ENST00000625216 KRT79Q5XKE5 535 aa13.93□□□□□ -0.18
PNKP-217ENST00000625216 TMEM184AQ6ZMB5 413 aa13.93□□□□□ -0.18
PNKP-217ENST00000625216 PPP4R3CPQ6ZMV5 832 aa13.93□□□□□ -0.18
PNKP-217ENST00000625216 MAEAQ7L5Y9 396 aa13.93□□□□□ -0.18
PNKP-217ENST00000625216 ZBTB8OSQ8IWT0 167 aa13.93□□□□□ -0.18
PNKP-217ENST00000625216 GRAMD1CQ8IYS0 662 aa13.93□□□□□ -0.18
PNKP-217ENST00000625216 KCTD17Q8N5Z5 321 aa13.93□□□□□ -0.18
PNKP-217ENST00000625216 SMG8Q8ND04 991 aaKnown RBP13.93□□□□□ -0.18
PNKP-217ENST00000625216 SNX29Q8TEQ0 813 aa13.93□□□□□ -0.18
PNKP-217ENST00000625216 ERCC4Q92889 916 aaPredicted RBP13.93□□□□□ -0.18
PNKP-217ENST00000625216 PNMA5Q96PV4 448 aa13.93□□□□□ -0.18
PNKP-217ENST00000625216 POP1Q99575 1024 aaKnown RBP13.93□□□□□ -0.18
PNKP-217ENST00000625216 TMEM175Q9BSA9 504 aa13.93□□□□□ -0.18
PNKP-217ENST00000625216 FUCA2Q9BTY2 467 aa13.93□□□□□ -0.18
PNKP-217ENST00000625216 FZD8Q9H461 694 aa13.93□□□□□ -0.18
PNKP-217ENST00000625216 PRMT7Q9NVM4 692 aaPredicted RBP13.93□□□□□ -0.18
PNKP-217ENST00000625216 CLEC1BQ9P126 229 aa13.93□□□□□ -0.18
PNKP-217ENST00000625216 DNM3Q9UQ16 869 aa13.93□□□□□ -0.18
PNKP-217ENST00000625216 INPP5FQ9Y2H2 1132 aa13.93□□□□□ -0.18
PNKP-217ENST00000625216 PCDHGC5Q9Y5F6 944 aa13.93□□□□□ -0.18
PNKP-217ENST00000625216 LRRIQ4A6NIV6 560 aa13.92□□□□□ -0.18
PNKP-217ENST00000625216 MEIS3P2A8K0S8 358 aa13.92□□□□□ -0.18
PNKP-217ENST00000625216 NT5C1B-RDH14C9J2C7 533 aa13.92□□□□□ -0.18
PNKP-217ENST00000625216 PER2O15055 1255 aa13.92□□□□□ -0.18
PNKP-217ENST00000625216 INPPL1O15357 1258 aa13.92□□□□□ -0.18
PNKP-217ENST00000625216 ARF4P18085 180 aaPredicted RBP13.92□□□□□ -0.18
PNKP-217ENST00000625216 PLCG1P19174 1290 aa13.92□□□□□ -0.18
PNKP-217ENST00000625216 NAMPTP43490 491 aa13.92□□□□□ -0.18
PNKP-217ENST00000625216 GIT2Q14161 759 aa13.92□□□□□ -0.18
PNKP-217ENST00000625216 FAM187BQ17R55 369 aa13.92□□□□□ -0.18
PNKP-217ENST00000625216 TMEM119Q4V9L6 283 aa13.92□□□□□ -0.18
PNKP-217ENST00000625216 PLPP4Q5VZY2 271 aa13.92□□□□□ -0.18
PNKP-217ENST00000625216 CDCA2Q69YH5 1023 aaPredicted RBP13.92□□□□□ -0.18
PNKP-217ENST00000625216 SLC27A1Q6PCB7 646 aa13.92□□□□□ -0.18
PNKP-217ENST00000625216 LRSAM1Q6UWE0 723 aa13.92□□□□□ -0.18
PNKP-217ENST00000625216 DDX53Q86TM3 631 aaKnown RBP13.92□□□□□ -0.18
PNKP-217ENST00000625216 GAS2L3Q86XJ1 694 aa13.92□□□□□ -0.18
PNKP-217ENST00000625216 ADHFE1Q8IWW8 467 aa13.92□□□□□ -0.18
PNKP-217ENST00000625216 SMRP1Q8NCR6 262 aa13.92□□□□□ -0.18
PNKP-217ENST00000625216 KIFAP3Q92845 792 aa13.92□□□□□ -0.18
PNKP-217ENST00000625216 IGSF21Q96ID5 467 aa13.92□□□□□ -0.18
PNKP-217ENST00000625216 CPB2Q96IY4 423 aa13.92□□□□□ -0.18
PNKP-217ENST00000625216 FAM193BQ96PV7 902 aaPredicted RBP13.92□□□□□ -0.18
PNKP-217ENST00000625216 PLIN2Q99541 437 aa13.92□□□□□ -0.18
PNKP-217ENST00000625216 TRIM6Q9C030 488 aaPredicted RBP13.92□□□□□ -0.18
PNKP-217ENST00000625216 GPRC5CQ9NQ84 441 aa13.92□□□□□ -0.18
PNKP-217ENST00000625216 KIAA1024Q9UPX6 916 aa13.92□□□□□ -0.18
PNKP-217ENST00000625216 GIT1Q9Y2X7 761 aa13.92□□□□□ -0.18
PNKP-217ENST00000625216 IPPQ9Y573 584 aa13.92□□□□□ -0.18
PNKP-217ENST00000625216 IRAK3Q9Y616 596 aa13.92□□□□□ -0.18
PNKP-217ENST00000625216 C19orf67A6NJJ6 358 aa13.91□□□□□ -0.18
PNKP-217ENST00000625216 LETM1O95202 739 aaPredicted RBP13.91□□□□□ -0.18
PNKP-217ENST00000625216 CXCL14O95715 111 aa13.91□□□□□ -0.18
PNKP-217ENST00000625216 GLP2RO95838 553 aa13.91□□□□□ -0.18
PNKP-217ENST00000625216 SLFN14P0C7P3 912 aa13.91□□□□□ -0.18
PNKP-217ENST00000625216 HOXB8P17481 243 aaPredicted RBP13.91□□□□□ -0.18
PNKP-217ENST00000625216 SSTR3P32745 418 aaPredicted RBP13.91□□□□□ -0.18
PNKP-217ENST00000625216 STAT6P42226 847 aa13.91□□□□□ -0.18
PNKP-217ENST00000625216 EFNA5P52803 228 aa13.91□□□□□ -0.18
PNKP-217ENST00000625216 ZP2Q05996 745 aa13.91□□□□□ -0.18
PNKP-217ENST00000625216 PNOCQ13519 176 aa13.91□□□□□ -0.18
PNKP-217ENST00000625216 KCNC3Q14003 757 aa13.91□□□□□ -0.18
PNKP-217ENST00000625216 CLUL1Q15846 466 aa13.91□□□□□ -0.18
PNKP-217ENST00000625216 ECM1Q16610 540 aa13.91□□□□□ -0.18
PNKP-217ENST00000625216 MAPK6Q16659 721 aa13.91□□□□□ -0.18
PNKP-217ENST00000625216 HYIQ5T013 277 aa13.91□□□□□ -0.18
PNKP-217ENST00000625216 RRAGBQ5VZM2 374 aa13.91□□□□□ -0.18
PNKP-217ENST00000625216 ZNF280BQ86YH2 543 aa13.91□□□□□ -0.18
PNKP-217ENST00000625216 VPS52Q8N1B4 723 aa13.91□□□□□ -0.18
PNKP-217ENST00000625216 IFT74Q96LB3 600 aa13.91□□□□□ -0.18
PNKP-217ENST00000625216 EIF2AQ9BY44 585 aaKnown RBP13.91□□□□□ -0.18
PNKP-217ENST00000625216 BHMT2Q9H2M3 363 aa13.91□□□□□ -0.18
PNKP-217ENST00000625216 CD320Q9NPF0 282 aa13.91□□□□□ -0.18
PNKP-217ENST00000625216 USP25Q9UHP3 1055 aa13.91□□□□□ -0.18
PNKP-217ENST00000625216 FAN1Q9Y2M0 1017 aa13.91□□□□□ -0.18
PNKP-217ENST00000625216 TCF20Q9UGU0 1960 aaKnown RBP13.91□□□□□ -0.18
PNKP-217ENST00000625216 C2orf71A6NGG8 1288 aa13.9□□□□□ -0.18
PNKP-217ENST00000625216 ARL5CA6NH57 179 aa13.9□□□□□ -0.18
PNKP-217ENST00000625216 HIDE1A8MVS5 230 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms