RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 KANSL3Q9P2N6 904 aa17.81■□□□□ 0.44
LSM4-206ENST00000600289 HCSTQ9UBK5 93 aa17.81■□□□□ 0.44
LSM4-206ENST00000600289 LZTS1Q9Y250 596 aa17.81■□□□□ 0.44
LSM4-206ENST00000600289 TRIP11Q15643 1979 aa17.8■□□□□ 0.44
LSM4-206ENST00000600289 TTLL13PA6NNM8 815 aa17.8■□□□□ 0.44
LSM4-206ENST00000600289 CCDC169A6NNP5 214 aa17.8■□□□□ 0.44
LSM4-206ENST00000600289 H0YCG3 227 aa17.8■□□□□ 0.44
LSM4-206ENST00000600289 SMTNP53814 917 aa17.8■□□□□ 0.44
LSM4-206ENST00000600289 NCKAP1LP55160 1127 aa17.8■□□□□ 0.44
LSM4-206ENST00000600289 GIT2Q14161 759 aa17.8■□□□□ 0.44
LSM4-206ENST00000600289 SPOUT1Q5T280 376 aaKnown RBP17.8■□□□□ 0.44
LSM4-206ENST00000600289 RRAGBQ5VZM2 374 aa17.8■□□□□ 0.44
LSM4-206ENST00000600289 KCNT2Q6UVM3 1135 aa17.8■□□□□ 0.44
LSM4-206ENST00000600289 TAS1R3Q7RTX0 852 aa17.8■□□□□ 0.44
LSM4-206ENST00000600289 SPPL3Q8TCT6 385 aa17.8■□□□□ 0.44
LSM4-206ENST00000600289 URGCPQ8TCY9 931 aa17.8■□□□□ 0.44
LSM4-206ENST00000600289 ZNF558Q96NG5 402 aa17.8■□□□□ 0.44
LSM4-206ENST00000600289 TRIM6Q9C030 488 aaPredicted RBP17.8■□□□□ 0.44
LSM4-206ENST00000600289 RCOR1Q9UKL0 485 aa17.8■□□□□ 0.44
LSM4-206ENST00000600289 TNFSF13BQ9Y275 285 aa17.8■□□□□ 0.44
LSM4-206ENST00000600289 GIT1Q9Y2X7 761 aa17.8■□□□□ 0.44
LSM4-206ENST00000600289 NPTXRO95502 500 aa17.79■□□□□ 0.44
LSM4-206ENST00000600289 MAPTP10636 758 aaKnown RBP17.79■□□□□ 0.44
LSM4-206ENST00000600289 RAD51AP2Q09MP3 1159 aa17.79■□□□□ 0.44
LSM4-206ENST00000600289 CAMK1Q14012 370 aa17.79■□□□□ 0.44
LSM4-206ENST00000600289 DCAF4L1Q3SXM0 396 aa17.79■□□□□ 0.44
LSM4-206ENST00000600289 AXDND1Q5T1B0 1012 aaPredicted RBP17.79■□□□□ 0.44
LSM4-206ENST00000600289 NT5DC1Q5TFE4 455 aa17.79■□□□□ 0.44
LSM4-206ENST00000600289 APBB1IPQ7Z5R6 666 aaPredicted RBP17.79■□□□□ 0.44
LSM4-206ENST00000600289 TMEM161BQ8NDZ6 487 aa17.79■□□□□ 0.44
LSM4-206ENST00000600289 ADPGKQ9BRR6 497 aa17.79■□□□□ 0.44
LSM4-206ENST00000600289 MRPL4Q9BYD3 311 aaKnown RBP17.79■□□□□ 0.44
LSM4-206ENST00000600289 NXF3Q9H4D5 531 aaKnown RBP17.79■□□□□ 0.44
LSM4-206ENST00000600289 NSUN3Q9H649 340 aaKnown RBP17.79■□□□□ 0.44
LSM4-206ENST00000600289 PARVGQ9HBI0 331 aa17.79■□□□□ 0.44
LSM4-206ENST00000600289 ZFHX2Q9C0A1 2572 aaPredicted RBP17.79■□□□□ 0.44
LSM4-206ENST00000600289 DMDP11532 3685 aa17.78■□□□□ 0.44
LSM4-206ENST00000600289 A0A087X0B3 334 aa17.78■□□□□ 0.44
LSM4-206ENST00000600289 NPHP3-ACAD11A0A0J9YXS1 232 aa17.78■□□□□ 0.44
LSM4-206ENST00000600289 SFI1A8K8P3 1242 aa17.78■□□□□ 0.44
LSM4-206ENST00000600289 FGF18O76093 207 aa17.78■□□□□ 0.44
LSM4-206ENST00000600289 PROZP22891 400 aa17.78■□□□□ 0.44
LSM4-206ENST00000600289 ABCD1P33897 745 aa17.78■□□□□ 0.44
LSM4-206ENST00000600289 DNM1Q05193 864 aaKnown RBP17.78■□□□□ 0.44
LSM4-206ENST00000600289 COL19A1Q14993 1142 aa17.78■□□□□ 0.44
LSM4-206ENST00000600289 ATF7IP2Q5U623 682 aa17.78■□□□□ 0.44
LSM4-206ENST00000600289 SLC39A11Q8N1S5 342 aa17.78■□□□□ 0.44
LSM4-206ENST00000600289 ACO2Q99798 780 aaKnown RBP17.78■□□□□ 0.44
LSM4-206ENST00000600289 TMEM175Q9BSA9 504 aa17.78■□□□□ 0.44
LSM4-206ENST00000600289 RNF39Q9H2S5 420 aa17.78■□□□□ 0.44
LSM4-206ENST00000600289 CUEDC2Q9H467 287 aa17.78■□□□□ 0.44
LSM4-206ENST00000600289 PTPRHQ9HD43 1115 aa17.78■□□□□ 0.44
LSM4-206ENST00000600289 ALG13Q9NP73 1137 aaKnown RBP17.78■□□□□ 0.44
LSM4-206ENST00000600289 ATP6V1DQ9Y5K8 247 aa17.78■□□□□ 0.44
LSM4-206ENST00000600289 ARL5CA6NH57 179 aa17.77■□□□□ 0.44
LSM4-206ENST00000600289 SLC16A4O15374 487 aa17.77■□□□□ 0.44
LSM4-206ENST00000600289 DNAJB1P25685 340 aa17.77■□□□□ 0.44
LSM4-206ENST00000600289 STAT6P42226 847 aa17.77■□□□□ 0.44
LSM4-206ENST00000600289 BCAR1P56945 870 aa17.77■□□□□ 0.44
LSM4-206ENST00000600289 CACNB1Q02641 598 aaPredicted RBP17.77■□□□□ 0.44
LSM4-206ENST00000600289 ZP2Q05996 745 aa17.77■□□□□ 0.44
LSM4-206ENST00000600289 DHX8Q14562 1220 aaKnown RBP17.77■□□□□ 0.44
LSM4-206ENST00000600289 E2F4Q16254 413 aa17.77■□□□□ 0.44
LSM4-206ENST00000600289 LONRF3Q496Y0 759 aa17.77■□□□□ 0.44
LSM4-206ENST00000600289 IER5LQ5T953 404 aa17.77■□□□□ 0.44
LSM4-206ENST00000600289 EEF1DP3Q658K8 133 aa17.77■□□□□ 0.44
LSM4-206ENST00000600289 PDE12Q6L8Q7 609 aaKnown RBP17.77■□□□□ 0.44
LSM4-206ENST00000600289 SHC4Q6S5L8 630 aa17.77■□□□□ 0.44
LSM4-206ENST00000600289 ZPBP2Q6X784 338 aa17.77■□□□□ 0.44
LSM4-206ENST00000600289 SV2BQ7L1I2 683 aa17.77■□□□□ 0.44
LSM4-206ENST00000600289 CDR2LQ86X02 465 aaPredicted RBP17.77■□□□□ 0.44
LSM4-206ENST00000600289 THNSL1Q8IYQ7 743 aa17.77■□□□□ 0.44
LSM4-206ENST00000600289 POF1BQ8WVV4 589 aa17.77■□□□□ 0.44
LSM4-206ENST00000600289 MRPS27Q92552 414 aaKnown RBP17.77■□□□□ 0.44
LSM4-206ENST00000600289 MFSD14AQ96MC6 490 aa17.77■□□□□ 0.44
LSM4-206ENST00000600289 ST6GALNAC4Q9H4F1 302 aa17.77■□□□□ 0.44
LSM4-206ENST00000600289 NRDE2Q9H7Z3 1164 aa17.77■□□□□ 0.44
LSM4-206ENST00000600289 SPG21Q9NZD8 308 aa17.77■□□□□ 0.44
LSM4-206ENST00000600289 INPP5FQ9Y2H2 1132 aa17.77■□□□□ 0.44
LSM4-206ENST00000600289 HES2Q9Y543 173 aa17.77■□□□□ 0.44
LSM4-206ENST00000600289 C19orf67A6NJJ6 358 aa17.76■□□□□ 0.43
LSM4-206ENST00000600289 ABLIM1O14639 778 aa17.76■□□□□ 0.43
LSM4-206ENST00000600289 TBCAO75347 108 aaKnown RBP17.76■□□□□ 0.43
LSM4-206ENST00000600289 FAM13AO94988 1023 aa17.76■□□□□ 0.43
LSM4-206ENST00000600289 KRT18P05783 430 aaKnown RBP17.76■□□□□ 0.43
LSM4-206ENST00000600289 MLH1P40692 756 aa17.76■□□□□ 0.43
LSM4-206ENST00000600289 ALDH7A1P49419 539 aaKnown RBP17.76■□□□□ 0.43
LSM4-206ENST00000600289 AFF1P51825 1210 aaKnown RBP17.76■□□□□ 0.43
LSM4-206ENST00000600289 PTPN5P54829 565 aa17.76■□□□□ 0.43
LSM4-206ENST00000600289 KRT85P78386 507 aa17.76■□□□□ 0.43
LSM4-206ENST00000600289 DSC1Q08554 894 aa17.76■□□□□ 0.43
LSM4-206ENST00000600289 TCF15Q12870 199 aa17.76■□□□□ 0.43
LSM4-206ENST00000600289 STRN3Q13033 797 aa17.76■□□□□ 0.43
LSM4-206ENST00000600289 TMEM132AQ24JP5 1023 aa17.76■□□□□ 0.43
LSM4-206ENST00000600289 GSTCDQ8NEC7 633 aa17.76■□□□□ 0.43
LSM4-206ENST00000600289 DNAJC19Q96DA6 116 aa17.76■□□□□ 0.43
LSM4-206ENST00000600289 FIZ1Q96SL8 496 aa17.76■□□□□ 0.43
LSM4-206ENST00000600289 GAD1Q99259 594 aa17.76■□□□□ 0.43
LSM4-206ENST00000600289 TNMDQ9H2S6 317 aa17.76■□□□□ 0.43
LSM4-206ENST00000600289 TLR9Q9NR96 1032 aa17.76■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms