RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 OR9Q1Q8NGQ5 310 aa21.69■■□□□ 1.06
UPF1-207ENST00000599848 DPF3Q92784 378 aa21.69■■□□□ 1.06
UPF1-207ENST00000599848 CNTNAP4Q9C0A0 1308 aa21.69■■□□□ 1.06
UPF1-207ENST00000599848 ABCC3O15438 1527 aa21.69■■□□□ 1.06
UPF1-207ENST00000599848 C17orf102A2RUQ5 167 aa21.69■■□□□ 1.06
UPF1-207ENST00000599848 SLC2A3P11169 496 aa21.69■■□□□ 1.06
UPF1-207ENST00000599848 FMO2Q99518 471 aa21.69■■□□□ 1.06
UPF1-207ENST00000599848 PARVAQ9NVD7 372 aa21.69■■□□□ 1.06
UPF1-207ENST00000599848 NDE1Q9NXR1 346 aa21.69■■□□□ 1.06
UPF1-207ENST00000599848 CDV3Q9UKY7 258 aaKnown RBP21.69■■□□□ 1.06
UPF1-207ENST00000599848 PLS3P13797 630 aa21.69■■□□□ 1.06
UPF1-207ENST00000599848 COASYQ13057 564 aa21.69■■□□□ 1.06
UPF1-207ENST00000599848 PPHLN1Q8NEY8 458 aaKnown RBP21.69■■□□□ 1.06
UPF1-207ENST00000599848 EIF2AK1Q9BQI3 630 aaKnown RBP21.69■■□□□ 1.06
UPF1-207ENST00000599848 ALDH1A2O94788 518 aa21.69■■□□□ 1.06
UPF1-207ENST00000599848 UPP2O95045 317 aa21.69■■□□□ 1.06
UPF1-207ENST00000599848 YWHABP31946 246 aaKnown RBP21.69■■□□□ 1.06
UPF1-207ENST00000599848 HADHAP40939 763 aa21.69■■□□□ 1.06
UPF1-207ENST00000599848 HARS2P49590 506 aaKnown RBP21.69■■□□□ 1.06
UPF1-207ENST00000599848 CAPRIN1Q14444 709 aaKnown RBP21.69■■□□□ 1.06
UPF1-207ENST00000599848 NOTUMQ6P988 496 aa21.69■■□□□ 1.06
UPF1-207ENST00000599848 RHOT1Q8IXI2 618 aa21.69■■□□□ 1.06
UPF1-207ENST00000599848 MYRIPQ8NFW9 859 aa21.69■■□□□ 1.06
UPF1-207ENST00000599848 FAM84BQ96KN1 310 aaPredicted RBP21.69■■□□□ 1.06
UPF1-207ENST00000599848 SPATA31A1Q5TZJ5 1347 aa21.69■■□□□ 1.06
UPF1-207ENST00000599848 PRPF4O43172 522 aaKnown RBP eCLIP21.68■■□□□ 1.06
UPF1-207ENST00000599848 ROR1Q01973 937 aa21.68■■□□□ 1.06
UPF1-207ENST00000599848 DHX9Q08211 1270 aaKnown RBP21.68■■□□□ 1.06
UPF1-207ENST00000599848 NME3Q13232 169 aa21.68■■□□□ 1.06
UPF1-207ENST00000599848 PDIA5Q14554 519 aa21.68■■□□□ 1.06
UPF1-207ENST00000599848 PHKG1Q16816 387 aa21.68■■□□□ 1.06
UPF1-207ENST00000599848 MROH8Q9H579 483 aa21.68■■□□□ 1.06
UPF1-207ENST00000599848 AP1B1Q10567 949 aa21.68■■□□□ 1.06
UPF1-207ENST00000599848 PLEKHH3Q7Z736 793 aa21.68■■□□□ 1.06
UPF1-207ENST00000599848 TSPAN17Q96FV3 270 aa21.68■■□□□ 1.06
UPF1-207ENST00000599848 PLEKHA4Q9H4M7 779 aa21.68■■□□□ 1.06
UPF1-207ENST00000599848 EPB41L5Q9HCM4 733 aa21.68■■□□□ 1.06
UPF1-207ENST00000599848 SARS2Q9NP81 518 aaKnown RBP21.68■■□□□ 1.06
UPF1-207ENST00000599848 ATP8A1Q9Y2Q0 1164 aa21.68■■□□□ 1.06
UPF1-207ENST00000599848 NR3C2P08235 984 aa21.68■■□□□ 1.06
UPF1-207ENST00000599848 SETSIPP0DME0 302 aa21.68■■□□□ 1.06
UPF1-207ENST00000599848 UGP2Q16851 508 aa21.68■■□□□ 1.06
UPF1-207ENST00000599848 FBXO41Q8TF61 875 aa21.68■■□□□ 1.06
UPF1-207ENST00000599848 SIK2Q9H0K1 926 aa21.68■■□□□ 1.06
UPF1-207ENST00000599848 CATSPERBQ9H7T0 1116 aa21.68■■□□□ 1.06
UPF1-207ENST00000599848 GIMAP4Q9NUV9 329 aa21.68■■□□□ 1.06
UPF1-207ENST00000599848 HEY1Q9Y5J3 304 aa21.68■■□□□ 1.06
UPF1-207ENST00000599848 SLC30A1Q9Y6M5 507 aa21.68■■□□□ 1.06
UPF1-207ENST00000599848 CFAP65Q6ZU64 1925 aaKnown RBP21.67■■□□□ 1.06
UPF1-207ENST00000599848 ELAVL2Q12926 359 aaKnown RBP21.67■■□□□ 1.06
UPF1-207ENST00000599848 MTHFD1LQ6UB35 978 aa21.67■■□□□ 1.06
UPF1-207ENST00000599848 STX19Q8N4C7 294 aa21.67■■□□□ 1.06
UPF1-207ENST00000599848 DAGLAQ9Y4D2 1042 aa21.67■■□□□ 1.06
UPF1-207ENST00000599848 CHUKO15111 745 aa21.67■■□□□ 1.06
UPF1-207ENST00000599848 BAATQ14032 418 aaPredicted RBP21.67■■□□□ 1.06
UPF1-207ENST00000599848 ADCK5Q3MIX3 580 aa21.67■■□□□ 1.06
UPF1-207ENST00000599848 SBK1Q52WX2 424 aa21.67■■□□□ 1.06
UPF1-207ENST00000599848 ERO1BQ86YB8 467 aa21.67■■□□□ 1.06
UPF1-207ENST00000599848 OR6P1Q8NGX9 317 aa21.67■■□□□ 1.06
UPF1-207ENST00000599848 C11orf70Q9BRQ4 267 aa21.67■■□□□ 1.06
UPF1-207ENST00000599848 DHX35Q9H5Z1 703 aaKnown RBP21.67■■□□□ 1.06
UPF1-207ENST00000599848 NKRFO15226 690 aaKnown RBP eCLIP21.67■■□□□ 1.062e-6■□□□□ 10.4
UPF1-207ENST00000599848 CTSHP09668 335 aa21.67■■□□□ 1.06
UPF1-207ENST00000599848 CD302Q8IX05 232 aa21.67■■□□□ 1.06
UPF1-207ENST00000599848 SCYL3Q8IZE3 742 aa21.67■■□□□ 1.06
UPF1-207ENST00000599848 MRGBPQ9NV56 204 aa21.67■■□□□ 1.06
UPF1-207ENST00000599848 FAM170AA1A519 330 aa21.67■■□□□ 1.06
UPF1-207ENST00000599848 MAPRE2Q15555 327 aa21.67■■□□□ 1.06
UPF1-207ENST00000599848 SGSM1Q2NKQ1 1148 aa21.67■■□□□ 1.06
UPF1-207ENST00000599848 SLC35F6Q8N357 371 aa21.67■■□□□ 1.06
UPF1-207ENST00000599848 GUF1Q8N442 669 aaKnown RBP21.67■■□□□ 1.06
UPF1-207ENST00000599848 TRAIPQ9BWF2 469 aa21.67■■□□□ 1.06
UPF1-207ENST00000599848 SFI1A8K8P3 1242 aa21.66■■□□□ 1.06
UPF1-207ENST00000599848 SLC16A3O15427 465 aaKnown RBP21.66■■□□□ 1.06
UPF1-207ENST00000599848 POLR3CQ9BUI4 534 aaPredicted RBP21.66■■□□□ 1.06
UPF1-207ENST00000599848 MANSC4A6NHS7 340 aaPredicted RBP21.66■■□□□ 1.06
UPF1-207ENST00000599848 KCNB1Q14721 858 aa21.66■■□□□ 1.06
UPF1-207ENST00000599848 C12orf60Q5U649 245 aa21.66■■□□□ 1.06
UPF1-207ENST00000599848 ENAHQ8N8S7 591 aaPredicted RBP21.66■■□□□ 1.06
UPF1-207ENST00000599848 TRIM55Q9BYV6 548 aa21.66■■□□□ 1.06
UPF1-207ENST00000599848 INTS2Q9H0H0 1204 aaKnown RBP21.66■■□□□ 1.06
UPF1-207ENST00000599848 GBA2Q9HCG7 927 aaPredicted RBP21.66■■□□□ 1.06
UPF1-207ENST00000599848 CASS4Q9NQ75 786 aa21.66■■□□□ 1.06
UPF1-207ENST00000599848 UTP6Q9NYH9 597 aaKnown RBP21.66■■□□□ 1.06
UPF1-207ENST00000599848 C3orf70A6NLC5 250 aaPredicted RBP21.66■■□□□ 1.06
UPF1-207ENST00000599848 APOL1O14791 398 aa21.66■■□□□ 1.06
UPF1-207ENST00000599848 SLC1A1P43005 524 aa21.66■■□□□ 1.06
UPF1-207ENST00000599848 NT5DC4Q86YG4 428 aa21.66■■□□□ 1.06
UPF1-207ENST00000599848 APOA4P06727 396 aa21.66■■□□□ 1.06
UPF1-207ENST00000599848 ZMYND12Q9H0C1 365 aa21.66■■□□□ 1.06
UPF1-207ENST00000599848 EML4Q9HC35 981 aaKnown RBP21.66■■□□□ 1.06
UPF1-207ENST00000599848 CDC27P30260 824 aa21.65■■□□□ 1.06
UPF1-207ENST00000599848 MORF4L2Q15014 288 aa21.65■■□□□ 1.06
UPF1-207ENST00000599848 IRAK1BP1Q5VVH5 260 aa21.65■■□□□ 1.06
UPF1-207ENST00000599848 RASEFQ8IZ41 740 aa21.65■■□□□ 1.06
UPF1-207ENST00000599848 AGAP1Q9UPQ3 857 aa21.65■■□□□ 1.06
UPF1-207ENST00000599848 FAM196BA6NMK8 535 aa21.65■■□□□ 1.06
UPF1-207ENST00000599848 AKR1B1P15121 316 aa21.65■■□□□ 1.06
UPF1-207ENST00000599848 NCF2P19878 526 aaPredicted RBP21.65■■□□□ 1.06
UPF1-207ENST00000599848 TDRD10Q5VZ19 366 aaKnown RBP21.65■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms