RNA–Protein interactions for RNA: ENST00000590559.2

CLIP3-204, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 4

Gene CLIP3, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-204ENST00000590559 ATOH1Q92858 354 aaPredicted RBP13.06□□□□□ -0.32
CLIP3-204ENST00000590559 GTF3C6Q969F1 213 aa13.06□□□□□ -0.32
CLIP3-204ENST00000590559 ZNF707Q96C28 371 aaPredicted RBP13.06□□□□□ -0.32
CLIP3-204ENST00000590559 ACSF2Q96CM8 615 aaPredicted RBP13.06□□□□□ -0.32
CLIP3-204ENST00000590559 KCNK12Q9HB15 430 aa13.06□□□□□ -0.32
CLIP3-204ENST00000590559 WDR6Q9NNW5 1121 aaKnown RBP13.06□□□□□ -0.32
CLIP3-204ENST00000590559 MAN1C1Q9NR34 630 aa13.06□□□□□ -0.32
CLIP3-204ENST00000590559 DUSP12Q9UNI6 340 aa13.06□□□□□ -0.32
CLIP3-204ENST00000590559 SSX2IPQ9Y2D8 614 aa13.06□□□□□ -0.32
CLIP3-204ENST00000590559 GIT1Q9Y2X7 761 aa13.06□□□□□ -0.32
CLIP3-204ENST00000590559 TRIP11Q15643 1979 aa13.06□□□□□ -0.32
CLIP3-204ENST00000590559 B4GALT5O43286 388 aa13.05□□□□□ -0.32
CLIP3-204ENST00000590559 URODP06132 367 aa13.05□□□□□ -0.32
CLIP3-204ENST00000590559 ADH1AP07327 375 aa13.05□□□□□ -0.32
CLIP3-204ENST00000590559 SPATA31C1P0DKV0 1188 aa13.05□□□□□ -0.32
CLIP3-204ENST00000590559 XRCC6P12956 609 aaKnown RBP eCLIP13.05□□□□□ -0.32
CLIP3-204ENST00000590559 OR1G1P47890 313 aa13.05□□□□□ -0.32
CLIP3-204ENST00000590559 GLUD2P49448 558 aa13.05□□□□□ -0.32
CLIP3-204ENST00000590559 TFDP1Q14186 410 aa13.05□□□□□ -0.32
CLIP3-204ENST00000590559 LILRA6Q6PI73 481 aa13.05□□□□□ -0.32
CLIP3-204ENST00000590559 POTEGQ6S5H5 508 aa13.05□□□□□ -0.32
CLIP3-204ENST00000590559 NSUN7Q8NE18 718 aaKnown RBP13.05□□□□□ -0.32
CLIP3-204ENST00000590559 GPR62Q9BZJ7 368 aa13.05□□□□□ -0.32
CLIP3-204ENST00000590559 NXF3Q9H4D5 531 aaKnown RBP13.05□□□□□ -0.32
CLIP3-204ENST00000590559 TTC12Q9H892 705 aaPredicted RBP13.05□□□□□ -0.32
CLIP3-204ENST00000590559 FNIP2Q9P278 1114 aa13.05□□□□□ -0.32
CLIP3-204ENST00000590559 IGSF9Q9P2J2 1179 aa13.05□□□□□ -0.32
CLIP3-204ENST00000590559 EPS15L1Q9UBC2 864 aa13.05□□□□□ -0.32
CLIP3-204ENST00000590559 PRG3Q9Y2Y8 225 aaPredicted RBP13.05□□□□□ -0.32
CLIP3-204ENST00000590559 RIF1Q5UIP0 2472 aaKnown RBP13.05□□□□□ -0.32
CLIP3-204ENST00000590559 NOTCH4Q99466 2003 aa13.05□□□□□ -0.32
CLIP3-204ENST00000590559 CCDC195A0A1B0GUA6 201 aa13.04□□□□□ -0.32
CLIP3-204ENST00000590559 BTBD18B2RXH4 712 aa13.04□□□□□ -0.32
CLIP3-204ENST00000590559 INO80B-WBP1J3KQ70 363 aa13.04□□□□□ -0.32
CLIP3-204ENST00000590559 C2CD2LO14523 706 aa13.04□□□□□ -0.32
CLIP3-204ENST00000590559 PI15O43692 258 aa13.04□□□□□ -0.32
CLIP3-204ENST00000590559 RFPL2O75678 378 aa13.04□□□□□ -0.32
CLIP3-204ENST00000590559 GLUD1P00367 558 aa13.04□□□□□ -0.32
CLIP3-204ENST00000590559 AOC1P19801 751 aa13.04□□□□□ -0.32
CLIP3-204ENST00000590559 ANKRD1Q15327 319 aa13.04□□□□□ -0.32
CLIP3-204ENST00000590559 CALCRLQ16602 461 aa13.04□□□□□ -0.32
CLIP3-204ENST00000590559 FAM187BQ17R55 369 aa13.04□□□□□ -0.32
CLIP3-204ENST00000590559 CDCA2Q69YH5 1023 aaPredicted RBP13.04□□□□□ -0.32
CLIP3-204ENST00000590559 SLC27A1Q6PCB7 646 aa13.04□□□□□ -0.32
CLIP3-204ENST00000590559 PPP4R3CPQ6ZMV5 832 aa13.04□□□□□ -0.32
CLIP3-204ENST00000590559 ASCL5Q7RTU5 278 aa13.04□□□□□ -0.32
CLIP3-204ENST00000590559 NECAB1Q8N987 351 aa13.04□□□□□ -0.32
CLIP3-204ENST00000590559 PIGOQ8TEQ8 1089 aa13.04□□□□□ -0.32
CLIP3-204ENST00000590559 FANCMQ8IYD8 2048 aa13.04□□□□□ -0.32
CLIP3-204ENST00000590559 MYH15Q9Y2K3 1946 aa13.03□□□□□ -0.32
CLIP3-204ENST00000590559 TGM5O43548 720 aa13.03□□□□□ -0.32
CLIP3-204ENST00000590559 MARCH6O60337 910 aa13.03□□□□□ -0.32
CLIP3-204ENST00000590559 NEMFO60524 1076 aa13.03□□□□□ -0.32
CLIP3-204ENST00000590559 AKAP5P24588 427 aa13.03□□□□□ -0.32
CLIP3-204ENST00000590559 ST3GAL1Q11201 340 aa13.03□□□□□ -0.32
CLIP3-204ENST00000590559 GRIK3Q13003 919 aa13.03□□□□□ -0.32
CLIP3-204ENST00000590559 NAB2Q15742 525 aa13.03□□□□□ -0.32
CLIP3-204ENST00000590559 FUT10Q6P4F1 479 aa13.03□□□□□ -0.32
CLIP3-204ENST00000590559 CDR2LQ86X02 465 aaPredicted RBP13.03□□□□□ -0.32
CLIP3-204ENST00000590559 B3GALT6Q96L58 329 aa13.03□□□□□ -0.32
CLIP3-204ENST00000590559 PRIMPOLQ96LW4 560 aa13.03□□□□□ -0.32
CLIP3-204ENST00000590559 MYADMQ96S97 322 aa13.03□□□□□ -0.32
CLIP3-204ENST00000590559 TMEM60Q9H2L4 133 aa13.03□□□□□ -0.32
CLIP3-204ENST00000590559 FZD8Q9H461 694 aa13.03□□□□□ -0.32
CLIP3-204ENST00000590559 PLEKHA4Q9H4M7 779 aa13.03□□□□□ -0.32
CLIP3-204ENST00000590559 DPP7Q9UHL4 492 aa13.03□□□□□ -0.32
CLIP3-204ENST00000590559 ADAM28Q9UKQ2 775 aa13.03□□□□□ -0.32
CLIP3-204ENST00000590559 FAM186AA6NE01 2351 aa13.03□□□□□ -0.32
CLIP3-204ENST00000590559 CLUHO75153 1309 aa13.03□□□□□ -0.32
CLIP3-204ENST00000590559 A0A087WWV3 80 aa13.02□□□□□ -0.33
CLIP3-204ENST00000590559 PRR23AA6NEV1 266 aa13.02□□□□□ -0.33
CLIP3-204ENST00000590559 POTEMA6NI47 508 aa13.02□□□□□ -0.33
CLIP3-204ENST00000590559 TTLL13PA6NNM8 815 aa13.02□□□□□ -0.33
CLIP3-204ENST00000590559 NARSO43776 548 aaKnown RBP13.02□□□□□ -0.33
CLIP3-204ENST00000590559 NPTXRO95502 500 aa13.02□□□□□ -0.33
CLIP3-204ENST00000590559 TXKP42681 527 aa13.02□□□□□ -0.33
CLIP3-204ENST00000590559 NCBP1Q09161 790 aaKnown RBP13.02□□□□□ -0.33
CLIP3-204ENST00000590559 USP41Q3LFD5 358 aa13.02□□□□□ -0.33
CLIP3-204ENST00000590559 CATSPER3Q86XQ3 398 aa13.02□□□□□ -0.33
CLIP3-204ENST00000590559 DIS3L2Q8IYB7 885 aaKnown RBP13.02□□□□□ -0.33
CLIP3-204ENST00000590559 CCDC105Q8IYK2 499 aa13.02□□□□□ -0.33
CLIP3-204ENST00000590559 RSAD2Q8WXG1 361 aa13.02□□□□□ -0.33
CLIP3-204ENST00000590559 PAAF1Q9BRP4 392 aa13.02□□□□□ -0.33
CLIP3-204ENST00000590559 COLEC11Q9BWP8 271 aa13.02□□□□□ -0.33
CLIP3-204ENST00000590559 NT5C3AQ9H0P0 336 aa13.02□□□□□ -0.33
CLIP3-204ENST00000590559 POLR3FQ9H1D9 316 aaPredicted RBP13.02□□□□□ -0.33
CLIP3-204ENST00000590559 BRMS1Q9HCU9 246 aa13.02□□□□□ -0.33
CLIP3-204ENST00000590559 GPRC5CQ9NQ84 441 aa13.02□□□□□ -0.33
CLIP3-204ENST00000590559 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP13.02□□□□□ -0.33
CLIP3-204ENST00000590559 ZDHHC7Q9NXF8 308 aa13.02□□□□□ -0.33
CLIP3-204ENST00000590559 WNT16Q9UBV4 365 aa13.02□□□□□ -0.33
CLIP3-204ENST00000590559 KRBA1A5PL33 1030 aa13.01□□□□□ -0.33
CLIP3-204ENST00000590559 PTGESO14684 152 aa13.01□□□□□ -0.33
CLIP3-204ENST00000590559 JAK2O60674 1132 aa13.01□□□□□ -0.33
CLIP3-204ENST00000590559 MED24O75448 989 aa13.01□□□□□ -0.33
CLIP3-204ENST00000590559 EDN1P05305 212 aa13.01□□□□□ -0.33
CLIP3-204ENST00000590559 SPATA31D3P0C874 917 aa13.01□□□□□ -0.33
CLIP3-204ENST00000590559 RTP2Q5QGT7 225 aa13.01□□□□□ -0.33
CLIP3-204ENST00000590559 SPATA31D4Q6ZUB0 917 aa13.01□□□□□ -0.33
CLIP3-204ENST00000590559 HACE1Q8IYU2 909 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms